Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8344035.1

Orthogroup ID

OG0013246

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 908

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8344035.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 445 bp

atgtttacaattggctatgaaacttacttagcctggttatgttttcagctattagagaaggacaccagcaagcgcctgggttgtggacctctgggaagtgatgaaatcaagcgccacaaatggttcaagccaattaattggaagaaattggatgctcgcgaaatccaaccaagcttccgacctgatgttgctgggcagcactgcatcgccaactttgagaaatgctggactgacatgccacttgtggactccccagctgctagtccgaatgcttctggaaacccgttctcaggctttagttatgttaggcctgcggttcaccgacataggtgtaatgcattcttcggcgacatccctggaagtgtgttggagaacactcttcatttggagcagtttcctccttttcaatatgggatcatggagtttcagaaagttacagaggacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008285 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04012 ko04066 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04350 ko04371 ko04666 ko04714 ko04910 ko04931 ko05165 ko05200 ko05205 ko05210 ko05212 ko05221 ko05224 ko05225 ko05226 ko05231 map01521 map01522 map04012 map04066 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04350 map04371 map04666 map04714 map04910 map04931 map05165 map05200 map05205 map05210 map05212 map05221 map05224 map05225 map05226 map05231

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

148

Amino Acids

16.96

Weight (kDa)

6.51

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01920 AT5G01920
fragaria_vesca	FvH4_6g09630
malus_domestica	MD04G1176200.v1.1 MD12G1190500.v1.1
prunus_persica	Prupe.6G295600_v2.0.a1
pyrus_communis	pycom04g15540
rosa_chinensis	RchiOBHm_Chr3g0460271
rosa_laevigata	RLG00000025029
rosa_multiflora	Rmu_co8344035.1_g000001 Rmu_sc0003763.1_g000001 Rmu_sc0035433.1_g000001
rosa_rugosa	Rorug03G0041200
rosa_samantha	Rh3AG099100 Rh3BG103000 Rh3CG104600 Rh3DG104000
rosa_wichuraiana	Rw3G008400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	127, 407
AjnI	CCWGG	3 cut(s)	32, 75, 355
AluBI	AGCT	3 cut(s)	49, 174, 257
AluI	AGCT	3 cut(s)	49, 174, 257
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	196, 257
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	75, 114
AspS9I	GGNCC	2 cut(s)	86, 442
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	86, 442
BbvI	GCAGC	2 cut(s)	208, 244
BciT130I	CCWGG	3 cut(s)	34, 77, 357
BfaI	CTAG	1 cut(s)	261
BfoI	RGCGCY	2 cut(s)	76, 115
BisI	GCNGC	2 cut(s)	197, 258
BlsI	GCNGC	2 cut(s)	198, 259
Bme1390I	CCNGG	3 cut(s)	34, 77, 357
Bme18I	GGWCC	2 cut(s)	86, 442
BmgT120I	GGNCC	2 cut(s)	86, 442
BmrFI	CCNGG	3 cut(s)	34, 77, 357
BmsI	GCATC	2 cut(s)	142, 213
BsaJI	CCNNGG	2 cut(s)	76, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
BseBI	CCWGG	3 cut(s)	34, 77, 357
BseDI	CCNNGG	2 cut(s)	76, 355
BseGI	GGATG	2 cut(s)	157, 351
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	208, 244
BseYI	CCCAGC	2 cut(s)	191, 253
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmI	GAATGC	2 cut(s)	274, 338
BsnI	GGCC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	414
Bsp68I	TCGCGA	1 cut(s)	159
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	159
BspPI	GGATC	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	76, 355
BssMI	GATC	1 cut(s)	414
Bst2UI	CCWGG	3 cut(s)	34, 77, 357
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	71, 157, 312
BstDEI	CTNAG	2 cut(s)	28, 289
BstF5I	GGATG	2 cut(s)	157, 351
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	2 cut(s)	76, 115
BstHHI	GCGC	2 cut(s)	75, 114
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstNI	CCWGG	3 cut(s)	34, 77, 357
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	3 cut(s)	32, 75, 355
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	208, 244
BstXI	CCANNNNNNTGG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	157, 351
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
BtuMI	TCGCGA	1 cut(s)	159
Cac8I	GCNNGC	3 cut(s)	71, 157, 312
CfoI	GCGC	2 cut(s)	75, 114
Cfr13I	GGNCC	2 cut(s)	86, 442
CviAII	CATG	2 cut(s)	235, 418
CviJI	RGCY	8 cut(s)	15, 32, 49, 130, 174, 257, 294, 310
CviKI_1	RGCY	8 cut(s)	15, 32, 49, 130, 174, 257, 294, 310
DdeI	CTNAG	2 cut(s)	28, 289
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	86, 442
EcoRII	CCWGG	3 cut(s)	32, 75, 355
EcoT22I	ATGCAT	1 cut(s)	340
FaeI	CATG	2 cut(s)	238, 421
FaiI	YATR	7 cut(s)	18, 40, 236, 303, 327, 411, 419
FatI	CATG	2 cut(s)	234, 417
Fnu4HI	GCNGC	2 cut(s)	197, 258
FokI	GGATG	2 cut(s)	164, 338
Fsp4HI	GCNGC	2 cut(s)	197, 258
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	2 cut(s)	74, 113
GluI	GCNGC	2 cut(s)	197, 258
GsaI	CCCAGC	2 cut(s)	195, 257
HaeII	RGCGCY	2 cut(s)	76, 115
HaeIII	GGCC	1 cut(s)	310
HhaI	GCGC	2 cut(s)	75, 114
Hin1II	CATG	2 cut(s)	238, 421
Hin6I	GCGC	2 cut(s)	73, 112
HinP1I	GCGC	2 cut(s)	73, 112
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	1 cut(s)	248
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	4 cut(s)	6, 86, 247, 319
Hpy188I	TCNGA	3 cut(s)	179, 267, 429
Hpy188III	TCNNGA	2 cut(s)	158, 276
Hpy8I	GTNNAC	4 cut(s)	6, 86, 247, 319
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	204, 338
HpyF3I	CTNAG	2 cut(s)	28, 289
Hsp92II	CATG	2 cut(s)	238, 421
HspAI	GCGC	2 cut(s)	73, 112
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	2 cut(s)	208, 244
LweI	GCATC	2 cut(s)	142, 213
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	3 cut(s)	154, 334, 371
MfeI	CAATTG	1 cut(s)	9
MluCI	AATT	4 cut(s)	9, 132, 136, 146
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	3 cut(s)	190, 202, 348
MnlI	CCTC	3 cut(s)	99, 408, 433
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	3 cut(s)	34, 77, 357
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	2 cut(s)	274, 338
MvaI	CCWGG	3 cut(s)	34, 77, 357
MvnI	CGCG	1 cut(s)	159
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	2 cut(s)	238, 421
NruI	TCGCGA	1 cut(s)	159
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	310
PctI	GAATGC	2 cut(s)	274, 338
PkrI	GCNGC	2 cut(s)	198, 259
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	135
Psp6I	CCWGG	3 cut(s)	32, 75, 355
PspFI	CCCAGC	2 cut(s)	191, 253
PspGI	CCWGG	3 cut(s)	32, 75, 355
PspPI	GGNCC	2 cut(s)	86, 442
PvuII	CAGCTG	1 cut(s)	257
RruI	TCGCGA	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	197, 258
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	2 cut(s)	86, 442
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	34, 77, 357
SetI	ASST	6 cut(s)	51, 91, 176, 184, 259, 332
SfaNI	GCATC	2 cut(s)	142, 213
SinI	GGWCC	2 cut(s)	86, 442
Sse9I	AATT	4 cut(s)	9, 132, 136, 146
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	261
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	3 cut(s)	32, 75, 355
TasI	AATT	4 cut(s)	9, 132, 136, 146
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	2 cut(s)	196, 257
TspDTI	ATGAA	3 cut(s)	33, 117, 371
TspRI	CASTG	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	86, 442
VspI	ATTAAT	1 cut(s)	135
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.