Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013246

Physical Location & Seq

Genomic Coordinates Reverse (-)

8276265 .. 8280307

Gene Structure 4043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTTATCTGCCCTCTCCAAGCTTAACTACACTTAAACACAATCCCAAACCTTTATTTTACTCTCCATTAAAACCCAATTCACTTGACAATCTCTGCTTCTTCACAAACCAATTCAAGGTTCACCGACATAGGTGTAATGCATTCTTCCGCGACATCCCTGGAAATGTGTTGGAGAACACTCTTCATTTGGAGCAGTTTCCTCCTTTTCAATATGGGATCATGGAATTTCAGAAAGTTACAGAGGACCTATCAGAGACACAGAAATGGGGGTTTCTGGTTTTTGCTGGGATAACGTGGATATACTTAACTGCAAGGCCAGGTATTCTCTTAGGTGCCATTGATGCATACCTTCTTGCTCCTCTGCAACTGGCTTTGGATAGTTTGGCTGGAAGGAGAAGATTGAAGATGACTGATTTTGTGATTGGGGACAAGTTGGGAGAAGGGTCTTTCGGCGTTGTTTATTCTGGGGCCATTGTTCCAAAGAATATGAATGTTGAGGAGAGAGTGCAGAAGAGAGGAAGGGGAAAAGCTTTGCAGTTGGATGAGAGGTTTAAGGATAAGGTCATCCTCAAGAAGGTGAAGGTTGGAATGCAGGGGGCAGAAGAATGTGGCGAATTCGAGGAGTGGTTCAACTACAGGCTGTCTAGAGCAGCACCTGAAACATGTGCTGCTTTTCTGGGAAGTTTTGTTGCTGATAAAACAAGTTCACAGTTTACCAAGGGTGGAAAGTGGCTTGTTTGGAAATTTGAGGGAAACCAAACTCTTGCTGACTACATGACAGATCGGAAATTCCCTTTTAACTTAGAGTCTGTCATGTTTGGACGTGTCTTGCAAGATGTAGACTCTGTCAAGCGCAGTGCCCTGATCATCAAGCAAATAATGCGTCAGATTATTACTTCGCTCAAGAAAATCCATGACACAGGCATTGTTCACCGGGATATAAAGCCAGCAAACTTAGTAGTGACAAAAAAGGGAAAGATCAAGCTCATAGATTTTGGGGCAGCTACTGACCTCCGGATTGGAAAGAACTTTGTTCCAAACCGAGGCCTGCTTGACCCTGACTTCTGTCCTCCTGAACTGTATGTGCTCCCAGAGGAAACACCGGTGCCTCCTCCAGAACCTATTGCTGCAGTTCTTTCTCCGATTCTTTGGCAGTACCATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010109 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0031323 GO:0036211 GO:0042548 GO:0042549 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043467 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

389

Amino Acids

44.06

Weight (kDa)

9.22

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	142 - 360	2.9e-09	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	275 - 339	5.1e-08	ABC1 atypical kinase-like domain
Pkinase	PF00069	285 - 361	9.9e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01920 AT5G01920
fragaria_vesca	FvH4_6g09630
malus_domestica	MD04G1176200.v1.1 MD12G1190500.v1.1
prunus_persica	Prupe.6G295600_v2.0.a1
pyrus_communis	pycom04g15540
rosa_chinensis	RchiOBHm_Chr3g0460271
rosa_laevigata	RLG00000025029
rosa_multiflora	Rmu_co8344035.1_g000001 Rmu_sc0003763.1_g000001 Rmu_sc0035433.1_g000001
rosa_rugosa	Rorug03G0041200
rosa_samantha	Rh3AG099100 Rh3BG103000 Rh3CG104600 Rh3DG104000
rosa_wichuraiana	Rw3G008400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	335, 1108
AccI	GTMKAC	1 cut(s)	843
AccII	CGCG	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	1017
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	4 cut(s)	227, 617, 746, 791
AfaI	GTAC	1 cut(s)	1160
AfiI	CCNNNNNNNGG	3 cut(s)	118, 577, 1046
AflIII	ACRYGT	2 cut(s)	665, 826
AgeI	ACCGGT	1 cut(s)	1105
AgsI	TTSAA	4 cut(s)	118, 212, 406, 634
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	160, 319
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	4 cut(s)	24, 533, 988, 1007
AluI	AGCT	4 cut(s)	24, 533, 988, 1007
Alw21I	GWGCWC	1 cut(s)	1092
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	2 cut(s)	659, 1010
Aor13HI	TCCGGA	1 cut(s)	1017
AoxI	GGCC	3 cut(s)	317, 471, 1048
ApeKI	GCWGC	4 cut(s)	653, 671, 1004, 1130
ApoI	RAATTY	4 cut(s)	227, 617, 746, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	871, 903
AsiGI	ACCGGT	1 cut(s)	1105
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	2 cut(s)	247, 471
AsuC2I	CCSGG	1 cut(s)	938
AsuHPI	GGTGA	3 cut(s)	116, 592, 926
AvaII	GGWCC	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	865
BanI	GGYRCC	2 cut(s)	335, 1108
Bbv12I	GWGCWC	1 cut(s)	1092
BbvI	GCAGC	4 cut(s)	658, 665, 1016, 1117
BciT130I	CCWGG	2 cut(s)	162, 321
BclI	TGATCA	1 cut(s)	867
BcnI	CCSGG	1 cut(s)	938
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	648
BfmI	CTRYAG	2 cut(s)	637, 1131
BisI	GCNGC	4 cut(s)	654, 672, 1005, 1131
BlsI	GCNGC	4 cut(s)	655, 673, 1006, 1132
Bme1390I	CCNGG	3 cut(s)	162, 321, 938
Bme18I	GGWCC	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	827
BmgT120I	GGNCC	2 cut(s)	247, 471
BmiI	GGNNCC	3 cut(s)	337, 472, 1110
BmrFI	CCNGG	3 cut(s)	162, 321, 938
BmsI	GCATC	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	1068
BpmI	CTGGAG	1 cut(s)	1101
BpuEI	CTTGAG	2 cut(s)	557, 890
BpuMI	CCSGG	1 cut(s)	938
BsaJI	CCNNGG	3 cut(s)	160, 720, 1045
BsaWI	WCCGGW	2 cut(s)	1017, 1105
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 577, 1046
Bse118I	RCCGGY	1 cut(s)	1105
Bse1I	ACTGG	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	1017
BseBI	CCWGG	2 cut(s)	162, 321
BseDI	CCNNGG	3 cut(s)	160, 720, 1045
BseGI	GGATG	4 cut(s)	156, 550, 567, 1162
BseLI	CCNNNNNNNGG	3 cut(s)	118, 577, 1046
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	4 cut(s)	351, 515, 638, 1104
BseSI	GKGCMC	1 cut(s)	865
BseXI	GCAGC	4 cut(s)	658, 665, 1016, 1117
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	319, 473, 1050
BshNI	GGYRCC	2 cut(s)	335, 1108
BshTI	ACCGGT	1 cut(s)	1105
BsiHKAI	GWGCWC	1 cut(s)	1092
BsiSI	CCGG	3 cut(s)	937, 1018, 1106
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	3 cut(s)	118, 577, 1046
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	2 cut(s)	143, 597
BsnI	GGCC	3 cut(s)	319, 473, 1050
Bsp1286I	GDGCHC	2 cut(s)	865, 1092
Bsp13I	TCCGGA	1 cut(s)	1017
Bsp143I	GATC	4 cut(s)	219, 784, 867, 981
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	3 cut(s)	319, 473, 1050
BspEI	TCCGGA	1 cut(s)	1017
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	337, 472, 1110
BspMAI	CTGCAG	1 cut(s)	1135
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	2 cut(s)	335, 1108
BsrFI	RCCGGY	1 cut(s)	1105
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	1105
BssECI	CCNNGG	3 cut(s)	160, 720, 1045
BssMI	GATC	4 cut(s)	219, 784, 867, 981
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	162, 321
Bst4CI	ACNGT	2 cut(s)	714, 1083
Bst6I	CTCTTC	2 cut(s)	189, 509
BstAPI	GCANNNNNTGC	1 cut(s)	883
BstC8I	GCNNGC	2 cut(s)	951, 1052
BstDEI	CTNAG	3 cut(s)	331, 805, 958
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	4 cut(s)	156, 550, 567, 1162
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	4 cut(s)	222, 787, 870, 984
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	219, 784, 867, 981
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 883
BstNI	CCWGG	2 cut(s)	162, 321
BstNSI	RCATGY	1 cut(s)	669
BstPAI	GACNNNNGTC	1 cut(s)	1068
BstSCI	CCNGG	3 cut(s)	160, 319, 936
BstSFI	CTRYAG	2 cut(s)	637, 1131
BstSLI	GKGCMC	1 cut(s)	865
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	4 cut(s)	658, 665, 1016, 1117
BsuRI	GGCC	3 cut(s)	319, 473, 1050
BtrI	CACGTC	1 cut(s)	827
BtsCI	GGATG	4 cut(s)	156, 550, 567, 1162
BtsI	GCAGTG	1 cut(s)	865
BtsIMutI	CAGTG	1 cut(s)	865
Cac8I	GCNNGC	2 cut(s)	951, 1052
CaiI	CAGNNNCTG	2 cut(s)	659, 1010
CfoI	GCGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	1105
Cfr13I	GGNCC	2 cut(s)	247, 471
CseI	GACGC	1 cut(s)	875
Csp6I	GTAC	1 cut(s)	1159
CspAI	ACCGGT	1 cut(s)	1105
CviAII	CATG	5 cut(s)	223, 666, 778, 817, 917
CviQI	GTAC	1 cut(s)	1159
DdeI	CTNAG	3 cut(s)	331, 805, 958
DpnI	GATC	4 cut(s)	221, 786, 869, 983
DpnII	GATC	4 cut(s)	219, 784, 867, 981
Eam1104I	CTCTTC	2 cut(s)	189, 509
EarI	CTCTTC	2 cut(s)	189, 509
Eco130I	CCWWGG	1 cut(s)	720
Eco147I	AGGCCT	1 cut(s)	1050
Eco47I	GGWCC	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	160, 319
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	2 cut(s)	145, 349
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	5 cut(s)	226, 669, 781, 820, 920
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	5 cut(s)	222, 665, 777, 816, 916
FbaI	TGATCA	1 cut(s)	867
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	4 cut(s)	654, 672, 1005, 1131
FokI	GGATG	4 cut(s)	143, 554, 557, 1149
Fsp4HI	GCNGC	4 cut(s)	654, 672, 1005, 1131
FspBI	CTAG	1 cut(s)	648
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	4 cut(s)	654, 672, 1005, 1131
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	1101
HaeIII	GGCC	3 cut(s)	319, 473, 1050
HapII	CCGG	3 cut(s)	937, 1018, 1106
HgaI	GACGC	1 cut(s)	875
HhaI	GCGC	1 cut(s)	858
Hin1II	CATG	5 cut(s)	226, 669, 781, 820, 920
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HindIII	AAGCTT	2 cut(s)	22, 531
HinfI	GANTC	3 cut(s)	809, 845, 1147
HpaII	CCGG	3 cut(s)	937, 1018, 1106
HphI	GGTGA	3 cut(s)	116, 592, 926
Hpy166II	GTNNAC	5 cut(s)	124, 710, 717, 844, 934
Hpy188I	TCNGA	5 cut(s)	234, 256, 789, 891, 1146
Hpy188III	TCNNGA	6 cut(s)	574, 648, 907, 1018, 1076, 1118
Hpy8I	GTNNAC	5 cut(s)	124, 710, 717, 844, 934
HpyAV	CCTTC	6 cut(s)	362, 387, 437, 516, 571, 577
HpyCH4III	ACNGT	2 cut(s)	714, 1083
HpyCH4IV	ACGT	2 cut(s)	296, 826
HpyCH4V	TGCA	9 cut(s)	143, 314, 347, 367, 511, 538, 595, 835, 1133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 883
HpyF3I	CTNAG	3 cut(s)	331, 805, 958
HpySE526I	ACGT	2 cut(s)	296, 826
Hsp92II	CATG	5 cut(s)	226, 669, 781, 820, 920
HspAI	GCGC	1 cut(s)	856
Kpn2I	TCCGGA	1 cut(s)	1017
Ksp22I	TGATCA	1 cut(s)	867
Kzo9I	GATC	4 cut(s)	219, 784, 867, 981
LmnI	GCTCC	3 cut(s)	193, 364, 1095
Lsp1109I	GCAGC	4 cut(s)	658, 665, 1016, 1117
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	648
MaeII	ACGT	2 cut(s)	296, 826
MaeIII	GTNAC	2 cut(s)	238, 964
MalI	GATC	4 cut(s)	221, 786, 869, 983
MboI	GATC	4 cut(s)	219, 784, 867, 981
MboII	GAAGA	7 cut(s)	94, 139, 176, 411, 418, 526, 617
MhlI	GDGCHC	2 cut(s)	865, 1092
MluCI	AATT	6 cut(s)	79, 113, 227, 617, 746, 791
MlyI	GAGTC	2 cut(s)	818, 839
MmeI	TCCRAC	3 cut(s)	153, 522, 568
Mph1103I	ATGCAT	2 cut(s)	145, 349
MroI	TCCGGA	1 cut(s)	1017
MseI	TTAA	7 cut(s)	26, 36, 71, 308, 555, 801, 1168
MslI	CAYNNNNRTG	1 cut(s)	265
MspI	CCGG	3 cut(s)	937, 1018, 1106
MspR9I	CCNGG	3 cut(s)	162, 321, 938
Mva1269I	GAATGC	2 cut(s)	143, 597
MvaI	CCWGG	2 cut(s)	162, 321
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	344, 883
NciI	CCSGG	1 cut(s)	938
NdeII	GATC	4 cut(s)	219, 784, 867, 981
NlaIII	CATG	5 cut(s)	226, 669, 781, 820, 920
NlaIV	GGNNCC	3 cut(s)	337, 472, 1110
NmuCI	GTSAC	1 cut(s)	964
NsiI	ATGCAT	2 cut(s)	145, 349
NspI	RCATGY	1 cut(s)	669
PceI	AGGCCT	1 cut(s)	1050
PciI	ACATGT	1 cut(s)	665
PctI	GAATGC	2 cut(s)	143, 597
PfeI	GAWTC	1 cut(s)	1147
PflFI	GACNNNGTC	1 cut(s)	848
PinAI	ACCGGT	1 cut(s)	1105
PkrI	GCNGC	4 cut(s)	655, 673, 1006, 1132
PleI	GAGTC	2 cut(s)	817, 839
PpsI	GAGTC	2 cut(s)	817, 839
PpuMI	RGGWCCY	1 cut(s)	247
PscI	ACATGT	1 cut(s)	665
PshAI	GACNNNNGTC	1 cut(s)	1068
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	160, 319
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	160, 319
PspN4I	GGNNCC	3 cut(s)	337, 472, 1110
PspPI	GGNCC	2 cut(s)	247, 471
PspPPI	RGGWCCY	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	1135
PstNI	CAGNNNCTG	2 cut(s)	659, 1010
PsyI	GACNNNGTC	1 cut(s)	848
RsaI	GTAC	1 cut(s)	1160
RsaNI	GTAC	1 cut(s)	1159
RseI	CAYNNNNRTG	1 cut(s)	265
SaqAI	TTAA	7 cut(s)	26, 36, 71, 308, 555, 801, 1168
SatI	GCNGC	4 cut(s)	654, 672, 1005, 1131
Sau3AI	GATC	4 cut(s)	219, 784, 867, 981
Sau96I	GGNCC	2 cut(s)	247, 471
SchI	GAGTC	2 cut(s)	818, 839
ScrFI	CCNGG	3 cut(s)	162, 321, 938
SduI	GDGCHC	2 cut(s)	865, 1092
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	637, 1131
SgrAI	CRCCGGYG	1 cut(s)	1105
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	265
SmlI	CTYRAG	2 cut(s)	572, 905
SmoI	CTYRAG	2 cut(s)	572, 905
Sse9I	AATT	6 cut(s)	79, 113, 227, 617, 746, 791
SseBI	AGGCCT	1 cut(s)	1050
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	1050
StyD4I	CCNGG	3 cut(s)	160, 319, 936
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	714, 1083
TaiI	ACGT	2 cut(s)	299, 829
TaqI	TCGA	1 cut(s)	621
TasI	AATT	6 cut(s)	79, 113, 227, 617, 746, 791
TfiI	GAWTC	1 cut(s)	1147
Tru1I	TTAA	7 cut(s)	26, 36, 71, 308, 555, 801, 1168
Tru9I	TTAA	7 cut(s)	26, 36, 71, 308, 555, 801, 1168
TscAI	CASTG	1 cut(s)	865
TseFI	GTSAC	1 cut(s)	964
TseI	GCWGC	4 cut(s)	653, 671, 1004, 1130
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	2 cut(s)	176, 506
TspRI	CASTG	1 cut(s)	865
Tth111I	GACNNNGTC	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	247
XagI	CCTNNNNNAGG	1 cut(s)	575
XapI	RAATTY	4 cut(s)	227, 617, 746, 791
XbaI	TCTAGA	1 cut(s)	647
XceI	RCATGY	1 cut(s)	669
XmiI	GTMKAC	1 cut(s)	843
XspI	CTAG	1 cut(s)	648
Zsp2I	ATGCAT	2 cut(s)	145, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.