FvH4_6g09860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016362
Physical Location & Seq
Forward (+)
5871304 .. 5872046
743 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09860.t1

Sequence Viewer

Length: 369 bp
ATGGAAGAAGTAGAAGTGATCATGAGGAAGTTTGGGGACGAACAGAGCTCTCTGCTCGACCGATACGAAAGGCTCTCGGTGGAGATACAACTCAACCAGGCCATGTTGAAGCGGAGTCTCTCCGAGCCGATTCATCAAAGTCGATCTCAACCAGCAGTTTTGATTGCTCAAAGCCTTCAAGCACTACCACCGCAGCAGCAGCCGCCATTGTTTAGTAAGAAGAAGGGTGGCTCTGGCTTTCACAAGGTTTTAAAGAAGATGATCAAACCCTTTATTGGAAGAATGGATAGCAGCAAGAAGAAGAAAGCACCAGATGTGGAAGTCGACCCGAGGTTTTGGAAGACATTTAGCAGATCTATGAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.08

Weight (kDa)

10.16

Isoelectric Point (pI)

70.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09860
prunus_persica Prupe.6G293700_v2.0.a1
pyrus_communis pycom12g17600
rosa_chinensis RchiOBHm_Chr3g0460461
rosa_laevigata RLG00000025003 RLG00000025009
rosa_multiflora Rmu_co8364653.1_g000001 Rmu_sc0004267.1_g000008 Rmu_sc0021028.1_g000004
rosa_roxburghii Rroxscaffold_6G00419460
rosa_rugosa Rorug03G0042800
rosa_samantha Rh3AG100900 Rh3BG104900 Rh3CG106700 Rh3DG106200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AciI CCGC 3 cut(s) 112, 191, 203
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 2 cut(s) 109, 179
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 4 cut(s) 193, 196, 199, 291
AvaI CYCGRG 1 cut(s) 328
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 4 cut(s) 205, 208, 211, 303
BciT130I CCWGG 1 cut(s) 98
BclI TGATCA 2 cut(s) 18, 261
BcoDI GTCTC 1 cut(s) 122
BglII AGATCT 1 cut(s) 353
BisI GCNGC 5 cut(s) 194, 197, 200, 203, 292
BlsI GCNGC 5 cut(s) 195, 198, 201, 204, 293
Bme1390I CCNGG 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 275
BseXI GCAGC 4 cut(s) 205, 208, 211, 303
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 328
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 4 cut(s) 18, 143, 261, 353
BspACI CCGC 3 cut(s) 112, 191, 203
BspANI GGCC 1 cut(s) 101
BspHI TCATGA 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 4 cut(s) 18, 143, 261, 353
Bst2UI CCWGG 1 cut(s) 98
BstKTI GATC 4 cut(s) 21, 146, 264, 356
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 4 cut(s) 18, 143, 261, 353
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 199, 202
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 205, 208, 211, 303
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 1 cut(s) 101
CciI TCATGA 1 cut(s) 21
CviAII CATG 2 cut(s) 22, 103
CviJI RGCY 9 cut(s) 48, 73, 101, 127, 174, 202, 231, 237, 364
CviKI_1 RGCY 9 cut(s) 48, 73, 101, 127, 174, 202, 231, 237, 364
DpnI GATC 4 cut(s) 20, 145, 263, 355
DpnII GATC 4 cut(s) 18, 143, 261, 353
DraI TTTAAA 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 2 cut(s) 25, 106
FaiI YATR 3 cut(s) 23, 104, 359
FaqI GGGAC 1 cut(s) 50
FatI CATG 2 cut(s) 21, 102
FbaI TGATCA 2 cut(s) 18, 261
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 5 cut(s) 194, 197, 200, 203, 292
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 5 cut(s) 194, 197, 200, 203, 292
GluI GCNGC 5 cut(s) 194, 197, 200, 203, 292
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 2 cut(s) 25, 106
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 2 cut(s) 115, 130
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 185, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 202
Hsp92II CATG 2 cut(s) 25, 106
Ksp22I TGATCA 2 cut(s) 18, 261
Kzo9I GATC 4 cut(s) 18, 143, 261, 353
LpnPI CCDG 5 cut(s) 83, 110, 165, 219, 324
Lsp1109I GCAGC 4 cut(s) 205, 208, 211, 303
MalI GATC 4 cut(s) 20, 145, 263, 355
MboI GATC 4 cut(s) 18, 143, 261, 353
MboII GAAGA 7 cut(s) 17, 232, 268, 291, 310, 313, 352
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 50
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 3 cut(s) 18, 324, 354
MseI TTAA 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 199, 202
NdeII GATC 4 cut(s) 18, 143, 261, 353
NlaIII CATG 2 cut(s) 25, 106
PagI TCATGA 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 5 cut(s) 195, 198, 201, 204, 293
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PsuI RGATCY 1 cut(s) 353
SacI GAGCTC 1 cut(s) 50
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 5 cut(s) 194, 197, 200, 203, 292
Sau3AI GATC 4 cut(s) 18, 143, 261, 353
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 50
SetI ASST 3 cut(s) 50, 249, 335
SsiI CCGC 3 cut(s) 112, 191, 203
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 96
TaqI TCGA 3 cut(s) 57, 142, 324
TaqII GACCGA 1 cut(s) 75
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TseI GCWGC 4 cut(s) 193, 196, 199, 291
TspDTI ATGAA 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.