Rroxscaffold_6G00419460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016362
Physical Location & Seq
Reverse (-)
40930372 .. 40930737
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419460.1

Sequence Viewer

Length: 366 bp
ATGGATGAAATAGAAGTGATGATAAGGAAGTTTGGGGACGACAAGAGTGCTCTGCTGGACCAATATGAGAGGCTCTCTGTGGAGATACAACTCAACCAGGCTATGTTAAAGCGGAGTCTCTCCGAGCCGACTCATCAAACTCGGTCGCAAGCAGCACTTTTGATTGGTCAAGGCCTTCAAGCACCACCACCGCAGCCGCCGCCATTGATCAGTAAGAAACGTGGTGGCTCTGGCTTTCACAAGGTTCTGAAGAAGATGATCAAACCTATTATTGGAAGAATGGGTGGTGGCAAGAAGAAGAAAGTACCAGATGTGGAAGTCGAGCCCAGGTTTTGGAAGACATTTAATAGATCTCTTAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.67

Weight (kDa)

10.28

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09860
prunus_persica Prupe.6G293700_v2.0.a1
pyrus_communis pycom12g17600
rosa_chinensis RchiOBHm_Chr3g0460461
rosa_laevigata RLG00000025003 RLG00000025009
rosa_multiflora Rmu_co8364653.1_g000001 Rmu_sc0004267.1_g000008 Rmu_sc0021028.1_g000004
rosa_roxburghii Rroxscaffold_6G00419460
rosa_rugosa Rorug03G0042800
rosa_samantha Rh3AG100900 Rh3BG104900 Rh3CG106700 Rh3DG106200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 333
AciI CCGC 4 cut(s) 112, 191, 197, 200
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 272, 333
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 2 cut(s) 96, 326
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 122
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 152, 193
AspS9I GGNCC 1 cut(s) 58
AvaII GGWCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 164, 205
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 2 cut(s) 98, 328
BclI TGATCA 2 cut(s) 207, 258
BcoDI GTCTC 1 cut(s) 122
BglII AGATCT 1 cut(s) 350
BisI GCNGC 4 cut(s) 153, 194, 197, 200
BlsI GCNGC 4 cut(s) 154, 195, 198, 201
Bme1390I CCNGG 2 cut(s) 98, 328
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 98, 328
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BsaJI CCNNGG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 333
BseBI CCWGG 2 cut(s) 98, 328
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 272, 333
BseXI GCAGC 2 cut(s) 164, 205
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 52
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 272, 333
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 52, 327
Bsp143I GATC 3 cut(s) 207, 258, 350
BspACI CCGC 4 cut(s) 112, 191, 197, 200
BspANI GGCC 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 3 cut(s) 207, 258, 350
Bst2UI CCWGG 2 cut(s) 98, 328
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 356
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 210, 261, 353
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 3 cut(s) 207, 258, 350
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 2 cut(s) 98, 328
BstSCI CCNGG 2 cut(s) 96, 326
BstV1I GCAGC 2 cut(s) 164, 205
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 305
CviJI RGCY 8 cut(s) 73, 101, 127, 174, 196, 228, 234, 325
CviKI_1 RGCY 8 cut(s) 73, 101, 127, 174, 196, 228, 234, 325
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 356
DpnI GATC 3 cut(s) 209, 260, 352
DpnII GATC 3 cut(s) 207, 258, 350
Eco147I AGGCCT 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 96, 326
EcoT38I GRGCYC 1 cut(s) 327
FaiI YATR 2 cut(s) 66, 104
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 1 cut(s) 50
FbaI TGATCA 2 cut(s) 207, 258
Fnu4HI GCNGC 4 cut(s) 153, 194, 197, 200
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 4 cut(s) 153, 194, 197, 200
GluI GCNGC 4 cut(s) 153, 194, 197, 200
HaeIII GGCC 1 cut(s) 174
HinfI GANTC 2 cut(s) 115, 130
Hpy188I TCNGA 2 cut(s) 124, 249
HpyAV CCTTC 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 220
Ksp22I TGATCA 2 cut(s) 207, 258
Kzo9I GATC 3 cut(s) 207, 258, 350
LpnPI CCDG 7 cut(s) 41, 83, 110, 216, 313, 321, 340
Lsp1109I GCAGC 2 cut(s) 164, 205
MaeII ACGT 1 cut(s) 220
MalI GATC 3 cut(s) 209, 260, 352
MboI GATC 3 cut(s) 207, 258, 350
MboII GAAGA 6 cut(s) 262, 265, 288, 307, 310, 349
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 2 cut(s) 52, 327
MlyI GAGTC 2 cut(s) 124, 124
MnlI CCTC 1 cut(s) 63
MseI TTAA 2 cut(s) 107, 345
MspR9I CCNGG 2 cut(s) 98, 328
MvaI CCWGG 2 cut(s) 98, 328
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 3 cut(s) 207, 258, 350
PceI AGGCCT 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 333
PkrI GCNGC 4 cut(s) 154, 195, 198, 201
PleI GAGTC 2 cut(s) 123, 124
PpsI GAGTC 2 cut(s) 123, 124
Psp6I CCWGG 2 cut(s) 96, 326
PspGI CCWGG 2 cut(s) 96, 326
PspPI GGNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 107, 345
SatI GCNGC 4 cut(s) 153, 194, 197, 200
Sau3AI GATC 3 cut(s) 207, 258, 350
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 2 cut(s) 124, 124
ScrFI CCNGG 2 cut(s) 98, 328
SduI GDGCHC 2 cut(s) 52, 327
SetI ASST 4 cut(s) 223, 246, 268, 332
SinI GGWCC 1 cut(s) 58
SseBI AGGCCT 1 cut(s) 174
SsiI CCGC 4 cut(s) 112, 191, 197, 200
StuI AGGCCT 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 96, 326
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 321
TaqII GACCGA 1 cut(s) 132
TauI GCSGC 2 cut(s) 199, 202
Tru1I TTAA 2 cut(s) 107, 345
Tru9I TTAA 2 cut(s) 107, 345
TseI GCWGC 2 cut(s) 152, 193
TspDTI ATGAA 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.