Rh3DG106200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016362
Physical Location & Seq
Forward (+)
8541342 .. 8542305
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG106200.1

Sequence Viewer

Length: 492 bp
ATGGACTCCTTTGTCTCAATCTCAGCCTCAGCCACATTGAAAAAGAGAAATCTCAACCCTTTAAGCTTCTACTTGATACATGTTTTTCTCTATAAACATGTAAACCAGGTTGAAGCAGAGAGAGAAATGGATGAAATAGAAGTGATGATAAGGAAGTTTGGGGACGACAAGAGTGCTCTGATGGACCAATATGAGAGGCTCTCTGTGGAGATACAACTCAACCAGGCCATGTTAAAGCGGAGTCTCTCCGAGCCGACTCATCAAACTCGGTCGCAAGCAGCACTTTTGATTGGTCAAGGCCTTCAAGCACCACCACCGCAGCCGCCGCCATTGGTCAGTAAGAAACGTGGTGGCTCTGGCTTTCACAAGGTTCTGAAGAAGATGATCAAACCTATTATTGGAAGAATGGGTGGTGGCAAGAAGAAGAAAGTACCAGATGTGGAAGTCGAGCCCAGGTTTTGGAAGACATTTAGTAGATCTCTTAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.53

Weight (kDa)

10.08

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09860
prunus_persica Prupe.6G293700_v2.0.a1
pyrus_communis pycom12g17600
rosa_chinensis RchiOBHm_Chr3g0460461
rosa_laevigata RLG00000025003 RLG00000025009
rosa_multiflora Rmu_co8364653.1_g000001 Rmu_sc0004267.1_g000008 Rmu_sc0021028.1_g000004
rosa_roxburghii Rroxscaffold_6G00419460
rosa_rugosa Rorug03G0042800
rosa_samantha Rh3AG100900 Rh3BG104900 Rh3CG106700 Rh3DG106200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccB7I CCANNNNNTGG 1 cut(s) 459
AciI CCGC 4 cut(s) 238, 317, 323, 326
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 398, 459
AflIII ACRYGT 2 cut(s) 79, 97
AgsI TTSAA 3 cut(s) 40, 113, 305
AjnI CCWGG 3 cut(s) 105, 222, 452
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 19, 248
AoxI GGCC 2 cut(s) 225, 298
ApeKI GCWGC 2 cut(s) 278, 319
AspS9I GGNCC 1 cut(s) 184
AvaII GGWCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 178
BbvCI CCTCAGC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 290, 331
BccI CCATC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 3 cut(s) 107, 224, 454
BclI TGATCA 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 19, 248
BglII AGATCT 1 cut(s) 476
BisI GCNGC 4 cut(s) 279, 320, 323, 326
BlsI GCNGC 4 cut(s) 280, 321, 324, 327
Bme1390I CCNGG 3 cut(s) 107, 224, 454
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmrFI CCNGG 3 cut(s) 107, 224, 454
BpiI GAAGAC 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 185, 217
Bpu10I CCTNAGC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 452
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 459
BseBI CCWGG 3 cut(s) 107, 224, 454
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 398, 459
BseMII CTCAG 2 cut(s) 36, 42
BseXI GCAGC 2 cut(s) 290, 331
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 2 cut(s) 227, 300
BsiEI CGRYCG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 178
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 398, 459
BsmAI GTCTC 2 cut(s) 19, 248
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 227, 300
Bsp1286I GDGCHC 2 cut(s) 178, 453
Bsp143I GATC 2 cut(s) 384, 476
BspACI CCGC 4 cut(s) 238, 317, 323, 326
BspANI GGCC 2 cut(s) 227, 300
BspCNI CTCAG 2 cut(s) 35, 41
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 2 cut(s) 384, 476
Bst2UI CCWGG 3 cut(s) 107, 224, 454
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 3 cut(s) 22, 28, 482
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 387, 479
BstMAI GTCTC 2 cut(s) 19, 248
BstMBI GATC 2 cut(s) 384, 476
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 3 cut(s) 107, 224, 454
BstNSI RCATGY 2 cut(s) 83, 101
BstSCI CCNGG 3 cut(s) 105, 222, 452
BstV1I GCAGC 2 cut(s) 290, 331
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 2 cut(s) 227, 300
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 184
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 1 cut(s) 431
CviAII CATG 3 cut(s) 80, 98, 229
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 3 cut(s) 22, 28, 482
DpnI GATC 2 cut(s) 386, 478
DpnII GATC 2 cut(s) 384, 476
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eco147I AGGCCT 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 395
EcoRII CCWGG 3 cut(s) 105, 222, 452
EcoT38I GRGCYC 1 cut(s) 453
FaeI CATG 3 cut(s) 83, 101, 232
FaiI YATR 5 cut(s) 81, 93, 99, 192, 230
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 79, 97, 228
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 279, 320, 323, 326
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 4 cut(s) 279, 320, 323, 326
GluI GCNGC 4 cut(s) 279, 320, 323, 326
HaeIII GGCC 2 cut(s) 227, 300
Hin1II CATG 3 cut(s) 83, 101, 232
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 3 cut(s) 5, 241, 256
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 180, 250, 375
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 3 cut(s) 22, 28, 482
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 3 cut(s) 83, 101, 232
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 2 cut(s) 384, 476
LpnPI CCDG 8 cut(s) 92, 119, 209, 236, 342, 439, 447, 466
Lsp1109I GCAGC 2 cut(s) 290, 331
MabI ACCWGGT 1 cut(s) 105
MaeII ACGT 1 cut(s) 346
MalI GATC 2 cut(s) 386, 478
MboI GATC 2 cut(s) 384, 476
MboII GAAGA 6 cut(s) 388, 391, 414, 433, 436, 475
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 178, 453
MlyI GAGTC 2 cut(s) 250, 250
MnlI CCTC 2 cut(s) 37, 189
MseI TTAA 2 cut(s) 62, 233
MspR9I CCNGG 3 cut(s) 107, 224, 454
MvaI CCWGG 3 cut(s) 107, 224, 454
MwoI GCNNNNNNNGC 1 cut(s) 325
NdeII GATC 2 cut(s) 384, 476
NlaIII CATG 3 cut(s) 83, 101, 232
NspI RCATGY 2 cut(s) 83, 101
PceI AGGCCT 1 cut(s) 300
PciI ACATGT 2 cut(s) 79, 97
PflMI CCANNNNNTGG 1 cut(s) 459
PkrI GCNGC 4 cut(s) 280, 321, 324, 327
PleI GAGTC 2 cut(s) 249, 250
PpsI GAGTC 2 cut(s) 249, 250
PscI ACATGT 2 cut(s) 79, 97
Psp6I CCWGG 3 cut(s) 105, 222, 452
PspGI CCWGG 3 cut(s) 105, 222, 452
PspPI GGNCC 1 cut(s) 184
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SaqAI TTAA 2 cut(s) 62, 233
SatI GCNGC 4 cut(s) 279, 320, 323, 326
Sau3AI GATC 2 cut(s) 384, 476
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 2 cut(s) 250, 250
ScrFI CCNGG 3 cut(s) 107, 224, 454
SduI GDGCHC 2 cut(s) 178, 453
SetI ASST 6 cut(s) 68, 111, 349, 372, 394, 458
SexAI ACCWGGT 1 cut(s) 105
SinI GGWCC 1 cut(s) 184
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 4 cut(s) 238, 317, 323, 326
StuI AGGCCT 1 cut(s) 300
StyD4I CCNGG 3 cut(s) 105, 222, 452
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 447
TaqII GACCGA 1 cut(s) 258
TauI GCSGC 2 cut(s) 325, 328
Tru1I TTAA 2 cut(s) 62, 233
Tru9I TTAA 2 cut(s) 62, 233
TseI GCWGC 2 cut(s) 278, 319
TspDTI ATGAA 1 cut(s) 147
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 184
XceI RCATGY 2 cut(s) 83, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.