Prupe.6G293700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016362
Physical Location & Seq
Reverse (-)
26980478 .. 26980852
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G293700.1

Sequence Viewer

Length: 375 bp
ATGGGCCAAGCAGAAGTGAATAAGCAAGTGATCTTGAGGACGTTTGGGGATGACAAAAGCTCTCTGCTTGACCATTTTGAGAGGCTCTCTGTTGAGTTGCAGCTGAACCAAGCCATGCTGAGGCGGAGTCTCTCTGAGCCAACCCAAATTCGGTCCCAGCAACCTCTTTTAATCTGTCAGGCTCCATCAGAATCAGAACCACCACCACCACCACCACCTTTGGTTACCAAGAAAAGGCGTGGCTCAGGCTTAAGCAAGGTTCTGAAGAAGATGATCAAGCCCATTCTAAGCAGAATGAGTGCAAAAAAGAAGGAAATCCCAGATGCAAAAGACCCCAGGTTTTGGAAGACATTTAGTAGATCCATGCGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.15

Weight (kDa)

10.47

Isoelectric Point (pI)

75.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09860
prunus_persica Prupe.6G293700_v2.0.a1
pyrus_communis pycom12g17600
rosa_chinensis RchiOBHm_Chr3g0460461
rosa_laevigata RLG00000025003 RLG00000025009
rosa_multiflora Rmu_co8364653.1_g000001 Rmu_sc0004267.1_g000008 Rmu_sc0021028.1_g000004
rosa_roxburghii Rroxscaffold_6G00419460
rosa_rugosa Rorug03G0042800
rosa_samantha Rh3AG100900 Rh3BG104900 Rh3CG106700 Rh3DG106200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 342
AciI CCGC 1 cut(s) 124
AclWI GGATC 1 cut(s) 354
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 284
AfiI CCNNNNNNNGG 4 cut(s) 120, 150, 234, 342
AflII CTTAAG 1 cut(s) 250
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 2 cut(s) 60, 103
AluI AGCT 2 cut(s) 60, 103
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 354
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 147
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 2 cut(s) 4, 153
AvaII GGWCC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 337
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 250
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 4, 153
BmiI GGNNCC 2 cut(s) 155, 183
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 71, 103
Bpu10I CCTNAGC 2 cut(s) 119, 244
BpuEI CTTGAG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 335
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 150, 234, 342
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 4 cut(s) 120, 150, 234, 342
BseMII CTCAG 3 cut(s) 110, 126, 258
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 6
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 4 cut(s) 120, 150, 234, 342
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 6
Bsp143I GATC 3 cut(s) 30, 273, 359
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 3 cut(s) 111, 127, 257
BspLI GGNNCC 2 cut(s) 155, 183
BspPI GGATC 1 cut(s) 354
BspTI CTTAAG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 3 cut(s) 30, 273, 359
Bst2UI CCWGG 1 cut(s) 337
BstAFI CTTAAG 1 cut(s) 250
BstDEI CTNAG 4 cut(s) 119, 135, 244, 287
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 3 cut(s) 33, 276, 362
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 30, 273, 359
BstNI CCWGG 1 cut(s) 337
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 55
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 2 cut(s) 4, 153
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 2 cut(s) 115, 364
DdeI CTNAG 4 cut(s) 119, 135, 244, 287
DpnI GATC 3 cut(s) 32, 275, 361
DpnII GATC 3 cut(s) 30, 273, 359
EciI GGCGGA 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 335
FaeI CATG 2 cut(s) 118, 367
FaiI YATR 2 cut(s) 116, 365
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 114, 363
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 101
GlaI GCGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 101
GsaI CCCAGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 6
HhaI GCGC 1 cut(s) 369
Hin1II CATG 2 cut(s) 118, 367
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HinfI GANTC 2 cut(s) 127, 191
Hpy188I TCNGA 4 cut(s) 136, 190, 196, 264
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 100, 302, 326
HpyF3I CTNAG 4 cut(s) 119, 135, 244, 287
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 2 cut(s) 118, 367
HspAI GCGC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 3 cut(s) 30, 273, 359
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 164, 170, 231, 322, 333, 349
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 313
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 223
MalI GATC 3 cut(s) 32, 275, 361
MboI GATC 3 cut(s) 30, 273, 359
MboII GAAGA 3 cut(s) 277, 280, 358
MflI RGATCY 1 cut(s) 359
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 4 cut(s) 30, 75, 114, 174
MseI TTAA 2 cut(s) 170, 251
MspA1I CMGCKG 1 cut(s) 103
MspCI CTTAAG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 337
MvaI CCWGG 1 cut(s) 337
NdeII GATC 3 cut(s) 30, 273, 359
NlaIII CATG 2 cut(s) 118, 367
NlaIV GGNNCC 2 cut(s) 155, 183
PfeI GAWTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 342
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 335
PspEI GGTNACC 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 155, 183
PspPI GGNCC 2 cut(s) 4, 153
PsuI RGATCY 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 103
SaqAI TTAA 2 cut(s) 170, 251
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 3 cut(s) 30, 273, 359
Sau96I GGNCC 2 cut(s) 4, 153
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 337
SetI ASST 7 cut(s) 44, 62, 105, 166, 220, 261, 341
SfaNI GCATC 1 cut(s) 313
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 34, 250
SmoI CTYRAG 2 cut(s) 34, 250
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 335
TaiI ACGT 1 cut(s) 44
TaqII GACCGA 1 cut(s) 141
TasI AATT 1 cut(s) 147
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 170, 251
Tru9I TTAA 2 cut(s) 170, 251
TseI GCWGC 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 342
Vha464I CTTAAG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.