Rorug03G0042800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016362
Physical Location & Seq
Forward (+)
3305375 .. 3308911
3537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0042800.1

Sequence Viewer

Length: 1992 bp
ATGTCCACCGCCGTAGACAAAGTCTCCGGCGACGTTCCGATGAGCCCAGAACTCCGCAAATCCTTCAACCTCCTCAAGTCCCACGCCTCCAAAGTTGCCAACTTTACCCTCCAATGGCAGGACCTCGAAGACCACCTGCGCTCCATCGACGACTCCATTCAATCCAAAATCAACCACCTCCAGAAATCCAAACAAACCCAATTGAAATCCGAACCCAATTCTCAACAATCCACCCAGGTCAATTCCGCTGTCGAATCGGCGAAAGCCCAATTGGATTGCCTCAACACCCAATTCAAAGCTGAAGTTTCTTCGTCCGAATCCGAAAGCTTGGATTTCAATGGCGTAGTGGTGCACGATGGAGAGGGTTTGCTGGTGTTCATGAATGAGCATTTGAAAGAGAAGGAGCCGTCTCGCGATCTCATCACAGATGCGATTAGGGCCTCTGTGGGCTCTGGGAAGATAGTGCTTGAGGCAATGAGGTGGTTCTATCCGTCGGAGTCGTCGAATAAGGGAGAAATGAGCTGTGAGCTGAGTGTTGTTAGGAGAAGTTGTGTGGTTTTGTTGGAGGAGATGACCAAAGTGAGGCCTTTGATTAGGCCTGAAGTGAAGGAAGAGGCGGCGAGGGTTGCATTGGAGTGGAAGGGAAAGGCTAGAAATGAAGCGACCAATACTCTGGAGCTTTGGGCTTTCTTGCAGCTTGTGGGTGCTTTTGGGTTGGTTGGTGAGTTTGATAGGGAAGAGATTTTCAAGCTGTTTGGTAGCGTGGCGGTAAGGAAACAGGCGCCGGAGTTGTTTAGGTCTCTTGGTTTCGGGGATAGAGTGTCGGAGTTTATTCAAAAACTGGTATCACAGAAGATGCGACTTGAGGCTATTAGATTCATTCATGCATTTGAACAGCTTGACAAGTTCCCTCCTATGCCCCTGCTTAAAGCACATTTGAAGTTCGCCAAGAAGGATGCAAAGATTAGTTGCAAGAGGGGGCAAGATCCTCTTAAAGCAGAGGATGCTGCCATAGATAAAGAAGTAGTATCTCTAAAAGCTATAATACGATGCATTGAAAGCTACAAGCTTGGAGTTGAACCACAGTATTCTCCTGAGAACCTCAGAAAGCGCATCAGCCAGCTGAAAAAGCAGAAAAAAGAGAAGCAAGTTACTCAAGCAACTCGTGTCCCTGAGGTTCAGGGGCAACACTTGAGTGGAAAGAAACGTACTGCCCCTGAAGTTAAGGCTCAACCCAATAAGAAGAACAGTAATAAGCATCATCGGACAGATCCAGCTGCTGTTCGAAATGCTTCTTTCAGAGCACCAACCACAGGACACTCAATACACCCATCTTATCGTCATCCAGTAGACTTGTTTGAGAGTCGAGGTGCAGAGTACTTTATACCATCAGCTGGAATGCCTCGACAAGCAGCGGATGCTCCCCATACTTCTTATGGCACTGCTTCGACCTTTAACTCATTGCGAGCATCTCATTATCAGCTAACAGGTTCGTACAAAGGTGAAGGTGCCGAATATGCTGCTCGATACTGTGATTCGGCATACTCCATTCCTGATGCTCATAGTGGCTTATCAGCTGGACGTTATGGTTTGATCAGTTCCTCTCCTATCACCCATACCCGGCAAACCACCTTGACAGGTGGAGCCTACGAATTGACAGGCTCCTCTCCTATTGCCCATACGCGGCACACCACTCAGCATATAAACTCAACAACTGCTTCCTATGGATTGGGGGGCAGTACTTCTGTATCTTCACATTTGAGCCCATTAACCAAGCGGTATGGGGCTAGTAGTATGGCTGTAAATGGGAGGACTGGGCAGTTTGGATCAGCAGGAAGCCCTCCCCCTGCGCGCGTAACCAATGTGAGCCCAAATTCTTATGTGTCCGGTGATCCACTGAGAATGGCTAATCACAAGGACAGGCCAGTTTCTTCAAGTAGTGGCTATGGCACACATACTAATCAGTACCAGCCTTCCATTTATCACCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

663

Amino Acids

73.1

Weight (kDa)

9.41

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 119 - 384 3.2e-76 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09860
prunus_persica Prupe.6G293700_v2.0.a1
pyrus_communis pycom12g17600
rosa_chinensis RchiOBHm_Chr3g0460461
rosa_laevigata RLG00000025003 RLG00000025009
rosa_multiflora Rmu_co8364653.1_g000001 Rmu_sc0004267.1_g000008 Rmu_sc0021028.1_g000004
rosa_roxburghii Rroxscaffold_6G00419460
rosa_rugosa Rorug03G0042800
rosa_samantha Rh3AG100900 Rh3BG104900 Rh3CG106700 Rh3DG106200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 144
AccB1I GGYRCC 2 cut(s) 781, 1508
AccB7I CCANNNNNTGG 1 cut(s) 1394
AccI GTMKAC 2 cut(s) 15, 1350
AccII CGCG 4 cut(s) 414, 1684, 1852, 1854
AciI CCGC 8 cut(s) 9, 55, 246, 617, 767, 1415, 1684, 1777
AclWI GGATC 4 cut(s) 980, 1265, 1834, 1886
AcsI RAATTY 1 cut(s) 1873
AcuI CTGAAG 3 cut(s) 321, 621, 1239
AcyI GRCGYC 1 cut(s) 782
AfaI GTAC 5 cut(s) 1210, 1379, 1496, 1741, 1967
AfiI CCNNNNNNNGG 7 cut(s) 114, 118, 582, 1313, 1394, 1620, 1683
AjnI CCWGG 1 cut(s) 234
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AleI CACNNNNGTG 1 cut(s) 1194
Alw21I GWGCWC 2 cut(s) 354, 1306
Alw26I GTCTC 3 cut(s) 28, 414, 804
Alw44I GTGCAC 1 cut(s) 350
AlwI GGATC 4 cut(s) 980, 1265, 1834, 1886
AlwNI CAGNNNCTG 1 cut(s) 1280
AoxI GGCC 4 cut(s) 438, 584, 596, 1922
ApaLI GTGCAC 1 cut(s) 350
ApeKI GCWGC 5 cut(s) 694, 1007, 1277, 1412, 1520
ApoI RAATTY 1 cut(s) 1873
Asp700I GAANNNNTTC 1 cut(s) 1291
AspLEI GCGC 5 cut(s) 141, 784, 1113, 1852, 1854
AspS9I GGNCC 2 cut(s) 121, 438
AsuC2I CCSGG 1 cut(s) 1621
AsuHPI GGTGA 5 cut(s) 734, 1514, 1603, 1901, 1976
AsuII TTCGAA 1 cut(s) 1285
AvaII GGWCC 1 cut(s) 121
AxyI CCTNAGG 1 cut(s) 1173
BaeGI GKGCMC 1 cut(s) 354
BaeI ACNNNNGTAYC 2 cut(s) 1731, 1764
BanI GGYRCC 2 cut(s) 781, 1508
BanII GRGCYC 4 cut(s) 47, 452, 1766, 1871
BauI CACGAG 1 cut(s) 1164
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 354, 1306
BbvI GCAGC 5 cut(s) 706, 994, 1264, 1424, 1507
BccI CCATC 4 cut(s) 152, 350, 1339, 1396
BceAI ACGGC 1 cut(s) 391
BcgI CGANNNNNNTGC 2 cut(s) 1502, 1536
BciT130I CCWGG 1 cut(s) 236
BclI TGATCA 1 cut(s) 1593
BcnI CCSGG 1 cut(s) 1621
BcoDI GTCTC 3 cut(s) 28, 414, 804
BfaI CTAG 2 cut(s) 651, 1788
BfoI RGCGCY 1 cut(s) 785
BfuAI ACCTGC 1 cut(s) 144
BisI GCNGC 7 cut(s) 618, 695, 1008, 1278, 1413, 1521, 1685
BlsI GCNGC 7 cut(s) 619, 696, 1009, 1279, 1414, 1522, 1686
BmcAI AGTACT 2 cut(s) 1379, 1741
Bme1390I CCNGG 2 cut(s) 236, 1621
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 438
BmiI GGNNCC 5 cut(s) 405, 783, 1510, 1645, 1663
BmrFI CCNGG 2 cut(s) 236, 1621
BmrI ACTGGG 1 cut(s) 1824
BmuI ACTGGG 1 cut(s) 1824
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 2 cut(s) 164, 695
Bpu14I TTCGAA 1 cut(s) 1285
BpuEI CTTGAG 5 cut(s) 59, 488, 884, 1140, 1213
BpuMI CCSGG 1 cut(s) 1621
BsaHI GRCGYC 1 cut(s) 782
BsaI GGTCTC 1 cut(s) 804
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 1886
BsaXI ACNNNNNCTCC 6 cut(s) 8, 38, 125, 155, 535, 565
Bsc4I CCNNNNNNNGG 7 cut(s) 114, 118, 582, 1313, 1394, 1620, 1683
Bse1I ACTGG 4 cut(s) 846, 1346, 1819, 1925
Bse21I CCTNAGG 1 cut(s) 1173
Bse3DI GCAATG 2 cut(s) 480, 1460
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 4 cut(s) 961, 1009, 1342, 1423
BseLI CCNNNNNNNGG 7 cut(s) 114, 118, 582, 1313, 1394, 1620, 1683
BseMI GCAATG 2 cut(s) 480, 1460
BseMII CTCAG 6 cut(s) 521, 1086, 1117, 1164, 1709, 1889
BseNI ACTGG 4 cut(s) 846, 1346, 1819, 1925
BsePI GCGCGC 1 cut(s) 1850
BseRI GAGGAG 3 cut(s) 62, 581, 1654
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 5 cut(s) 706, 994, 1264, 1424, 1507
BsgI GTGCAG 1 cut(s) 1392
Bsh1236I CGCG 4 cut(s) 414, 1684, 1852, 1854
BshFI GGCC 4 cut(s) 440, 586, 598, 1924
BshNI GGYRCC 2 cut(s) 781, 1508
BsiHKAI GWGCWC 2 cut(s) 354, 1306
BsiSI CCGG 4 cut(s) 27, 785, 1621, 1887
BslFI GGGAC 2 cut(s) 64, 1154
BslI CCNNNNNNNGG 7 cut(s) 114, 118, 582, 1313, 1394, 1620, 1683
BsmAI GTCTC 3 cut(s) 28, 414, 804
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 2 cut(s) 64, 1154
BsmI GAATGC 1 cut(s) 1404
BsnI GGCC 4 cut(s) 440, 586, 598, 1924
Bso31I GGTCTC 1 cut(s) 804
Bsp119I TTCGAA 1 cut(s) 1285
Bsp1286I GDGCHC 6 cut(s) 47, 354, 452, 1306, 1766, 1871
Bsp143I GATC 6 cut(s) 415, 985, 1270, 1593, 1826, 1891
Bsp68I TCGCGA 1 cut(s) 414
BspACI CCGC 8 cut(s) 9, 55, 246, 617, 767, 1415, 1684, 1777
BspANI GGCC 4 cut(s) 440, 586, 598, 1924
BspCNI CTCAG 6 cut(s) 522, 1087, 1116, 1165, 1708, 1890
BspFNI CGCG 4 cut(s) 414, 1684, 1852, 1854
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 5 cut(s) 405, 783, 1510, 1645, 1663
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 4 cut(s) 980, 1265, 1834, 1886
BspT104I TTCGAA 1 cut(s) 1285
BspT107I GGYRCC 2 cut(s) 781, 1508
BspTNI GGTCTC 1 cut(s) 804
BsrDI GCAATG 2 cut(s) 480, 1460
BsrI ACTGG 4 cut(s) 846, 1346, 1819, 1925
BssECI CCNNGG 1 cut(s) 234
BssHII GCGCGC 1 cut(s) 1850
BssMI GATC 6 cut(s) 415, 985, 1270, 1593, 1826, 1891
BssNI GRCGYC 1 cut(s) 782
BssSI CACGAG 1 cut(s) 1164
Bst2BI CACGAG 1 cut(s) 1164
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 3 cut(s) 1086, 1250, 1532
Bst6I CTCTTC 2 cut(s) 606, 732
BstACI GRCGYC 1 cut(s) 782
BstAPI GCANNNNNTGC 2 cut(s) 1004, 1418
BstBI TTCGAA 1 cut(s) 1285
BstC8I GCNNGC 3 cut(s) 1121, 1467, 1852
BstDEI CTNAG 6 cut(s) 530, 1095, 1103, 1173, 1695, 1898
BstF5I GGATG 4 cut(s) 961, 1009, 1342, 1423
BstFNI CGCG 4 cut(s) 414, 1684, 1852, 1854
BstH2I RGCGCY 1 cut(s) 785
BstHHI GCGC 5 cut(s) 141, 784, 1113, 1852, 1854
BstKTI GATC 6 cut(s) 418, 988, 1273, 1596, 1829, 1894
BstMAI GTCTC 3 cut(s) 28, 414, 804
BstMBI GATC 6 cut(s) 415, 985, 1270, 1593, 1826, 1891
BstMWI GCNNNNNNNGC 7 cut(s) 437, 626, 1004, 1059, 1129, 1418, 1517
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 234, 1619
BstSLI GKGCMC 1 cut(s) 354
BstUI CGCG 4 cut(s) 414, 1684, 1852, 1854
BstV1I GCAGC 5 cut(s) 706, 994, 1264, 1424, 1507
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 985, 1270
BstXI CCANNNNNNTGG 1 cut(s) 673
BstYI RGATCY 2 cut(s) 985, 1270
Bsu36I CCTNAGG 1 cut(s) 1173
BsuRI GGCC 4 cut(s) 440, 586, 598, 1924
BtsCI GGATG 4 cut(s) 961, 1009, 1342, 1423
BtsI GCAGTG 1 cut(s) 1440
BtsIMutI CAGTG 2 cut(s) 1440, 1895
BtuMI TCGCGA 1 cut(s) 414
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 3 cut(s) 1121, 1467, 1852
CaiI CAGNNNCTG 1 cut(s) 1280
CciI TCATGA 1 cut(s) 378
CfoI GCGC 5 cut(s) 141, 784, 1113, 1852, 1854
Cfr13I GGNCC 2 cut(s) 121, 438
Csp6I GTAC 5 cut(s) 1209, 1378, 1495, 1740, 1966
CviAII CATG 2 cut(s) 379, 884
CviQI GTAC 5 cut(s) 1209, 1378, 1495, 1740, 1966
DdeI CTNAG 6 cut(s) 530, 1095, 1103, 1173, 1695, 1898
DinI GGCGCC 1 cut(s) 783
DpnI GATC 6 cut(s) 417, 987, 1272, 1595, 1828, 1893
DpnII GATC 6 cut(s) 415, 985, 1270, 1593, 1826, 1891
Eam1104I CTCTTC 2 cut(s) 606, 732
EarI CTCTTC 2 cut(s) 606, 732
Eco147I AGGCCT 2 cut(s) 586, 598
Eco24I GRGCYC 4 cut(s) 47, 452, 1766, 1871
Eco31I GGTCTC 1 cut(s) 804
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 3 cut(s) 321, 621, 1239
Eco81I CCTNAGG 1 cut(s) 1173
EcoO109I RGGNCCY 2 cut(s) 121, 438
EcoRII CCWGG 1 cut(s) 234
EcoT22I ATGCAT 2 cut(s) 889, 1055
EcoT38I GRGCYC 4 cut(s) 47, 452, 1766, 1871
EgeI GGCGCC 1 cut(s) 783
EheI GGCGCC 1 cut(s) 783
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 2 cut(s) 382, 887
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FaqI GGGAC 2 cut(s) 64, 1154
FatI CATG 2 cut(s) 378, 883
FbaI TGATCA 1 cut(s) 1593
FblI GTMKAC 2 cut(s) 15, 1350
Fnu4HI GCNGC 7 cut(s) 618, 695, 1008, 1278, 1413, 1521, 1685
FokI GGATG 4 cut(s) 968, 1016, 1329, 1430
FriOI GRGCYC 4 cut(s) 47, 452, 1766, 1871
Fsp4HI GCNGC 7 cut(s) 618, 695, 1008, 1278, 1413, 1521, 1685
FspBI CTAG 2 cut(s) 651, 1788
GlaI GCGC 5 cut(s) 140, 783, 1112, 1851, 1853
GluI GCNGC 7 cut(s) 618, 695, 1008, 1278, 1413, 1521, 1685
GsuI CTGGAG 2 cut(s) 164, 695
HaeII RGCGCY 1 cut(s) 785
HaeIII GGCC 4 cut(s) 440, 586, 598, 1924
HapII CCGG 4 cut(s) 27, 785, 1621, 1887
HhaI GCGC 5 cut(s) 141, 784, 1113, 1852, 1854
Hin1I GRCGYC 1 cut(s) 782
Hin1II CATG 2 cut(s) 382, 887
Hin6I GCGC 5 cut(s) 139, 782, 1111, 1850, 1852
HinP1I GCGC 5 cut(s) 139, 782, 1111, 1850, 1852
HindIII AAGCTT 2 cut(s) 325, 1067
HinfI GANTC 7 cut(s) 152, 254, 317, 497, 876, 1363, 1535
HpaII CCGG 4 cut(s) 27, 785, 1621, 1887
HphI GGTGA 5 cut(s) 734, 1514, 1603, 1901, 1976
Hpy166II GTNNAC 4 cut(s) 6, 16, 352, 1351
Hpy188I TCNGA 9 cut(s) 39, 211, 316, 322, 496, 826, 1106, 1266, 1301
Hpy188III TCNNGA 6 cut(s) 181, 379, 413, 674, 1094, 1553
Hpy8I GTNNAC 4 cut(s) 6, 16, 352, 1351
Hpy99I CGWCG 4 cut(s) 35, 152, 496, 505
HpyAV CCTTC 7 cut(s) 73, 394, 601, 634, 946, 1499, 1983
HpyCH4III ACNGT 3 cut(s) 1086, 1250, 1532
HpyCH4IV ACGT 3 cut(s) 33, 1207, 1582
HpyCH4V TGCA 8 cut(s) 352, 629, 694, 887, 959, 972, 1053, 1373
HpyF10VI GCNNNNNNNGC 7 cut(s) 437, 626, 1004, 1059, 1129, 1418, 1517
HpyF3I CTNAG 6 cut(s) 530, 1095, 1103, 1173, 1695, 1898
HpySE526I ACGT 3 cut(s) 33, 1207, 1582
Hsp92I GRCGYC 1 cut(s) 782
Hsp92II CATG 2 cut(s) 382, 887
HspAI GCGC 5 cut(s) 139, 782, 1111, 1850, 1852
KasI GGCGCC 1 cut(s) 781
Ksp22I TGATCA 1 cut(s) 1593
Kzo9I GATC 6 cut(s) 415, 985, 1270, 1593, 1826, 1891
LmnI GCTCC 6 cut(s) 146, 403, 676, 1426, 1643, 1667
Lsp1109I GCAGC 5 cut(s) 706, 994, 1264, 1424, 1507
MaeI CTAG 2 cut(s) 651, 1788
MaeII ACGT 3 cut(s) 33, 1207, 1582
MaeIII GTNAC 2 cut(s) 1150, 1855
MalI GATC 6 cut(s) 417, 987, 1272, 1595, 1828, 1893
MboI GATC 6 cut(s) 415, 985, 1270, 1593, 1826, 1891
MboII GAAGA 9 cut(s) 140, 300, 469, 623, 749, 865, 1255, 1743, 1923
MfeI CAATTG 2 cut(s) 200, 269
MflI RGATCY 2 cut(s) 985, 1270
MhlI GDGCHC 6 cut(s) 47, 354, 452, 1306, 1766, 1871
MluCI AATT 7 cut(s) 200, 217, 241, 269, 290, 1652, 1873
Mly113I GGCGCC 1 cut(s) 782
MlyI GAGTC 3 cut(s) 146, 506, 1372
MmeI TCCRAC 3 cut(s) 474, 543, 804
Mph1103I ATGCAT 2 cut(s) 889, 1055
MroXI GAANNNNTTC 1 cut(s) 1291
MseI TTAA 5 cut(s) 927, 993, 1224, 1455, 1769
MslI CAYNNNNRTG 2 cut(s) 634, 1194
MspA1I CMGCKG 6 cut(s) 248, 1123, 1277, 1394, 1415, 1577
MspI CCGG 4 cut(s) 27, 785, 1621, 1887
MspR9I CCNGG 2 cut(s) 236, 1621
MunI CAATTG 2 cut(s) 200, 269
Mva1269I GAATGC 1 cut(s) 1404
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 4 cut(s) 414, 1684, 1852, 1854
MwoI GCNNNNNNNGC 7 cut(s) 437, 626, 1004, 1059, 1129, 1418, 1517
NarI GGCGCC 1 cut(s) 782
NciI CCSGG 1 cut(s) 1621
NdeII GATC 6 cut(s) 415, 985, 1270, 1593, 1826, 1891
NlaIII CATG 2 cut(s) 382, 887
NlaIV GGNNCC 5 cut(s) 405, 783, 1510, 1645, 1663
NruI TCGCGA 1 cut(s) 414
NsiI ATGCAT 2 cut(s) 889, 1055
NspV TTCGAA 1 cut(s) 1285
OliI CACNNNNGTG 1 cut(s) 1194
PagI TCATGA 1 cut(s) 378
PaqCI CACCTGC 1 cut(s) 144
PauI GCGCGC 1 cut(s) 1850
PceI AGGCCT 2 cut(s) 586, 598
PcsI WCGNNNNNNNCGW 1 cut(s) 500
PctI GAATGC 1 cut(s) 1404
PdmI GAANNNNTTC 1 cut(s) 1291
PfeI GAWTC 4 cut(s) 254, 317, 876, 1535
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 1394
PkrI GCNGC 7 cut(s) 619, 696, 1009, 1279, 1414, 1522, 1686
PleI GAGTC 3 cut(s) 146, 505, 1371
PluTI GGCGCC 1 cut(s) 785
PpsI GAGTC 3 cut(s) 146, 505, 1371
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 5 cut(s) 405, 783, 1510, 1645, 1663
PspPI GGNCC 2 cut(s) 121, 438
PspPPI RGGWCCY 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 1280
PsuI RGATCY 2 cut(s) 985, 1270
PsyI GACNNNGTC 1 cut(s) 20
PteI GCGCGC 1 cut(s) 1850
PvuII CAGCTG 4 cut(s) 1123, 1277, 1394, 1577
RruI TCGCGA 1 cut(s) 414
RsaI GTAC 5 cut(s) 1210, 1379, 1496, 1741, 1967
RsaNI GTAC 5 cut(s) 1209, 1378, 1495, 1740, 1966
RseI CAYNNNNRTG 2 cut(s) 634, 1194
SaqAI TTAA 5 cut(s) 927, 993, 1224, 1455, 1769
SatI GCNGC 7 cut(s) 618, 695, 1008, 1278, 1413, 1521, 1685
Sau3AI GATC 6 cut(s) 415, 985, 1270, 1593, 1826, 1891
Sau96I GGNCC 2 cut(s) 121, 438
ScaI AGTACT 2 cut(s) 1379, 1741
SchI GAGTC 3 cut(s) 146, 506, 1372
ScrFI CCNGG 2 cut(s) 236, 1621
SduI GDGCHC 6 cut(s) 47, 354, 452, 1306, 1766, 1871
SfoI GGCGCC 1 cut(s) 783
SfuI TTCGAA 1 cut(s) 1285
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 634, 1194
SmlI CTYRAG 5 cut(s) 74, 467, 863, 1155, 1192
SmoI CTYRAG 5 cut(s) 74, 467, 863, 1155, 1192
Sse9I AATT 7 cut(s) 200, 217, 241, 269, 290, 1652, 1873
SseBI AGGCCT 2 cut(s) 586, 598
SsiI CCGC 8 cut(s) 9, 55, 246, 617, 767, 1415, 1684, 1777
SspDI GGCGCC 1 cut(s) 781
SspMI CTAG 2 cut(s) 651, 1788
StuI AGGCCT 2 cut(s) 586, 598
StyD4I CCNGG 2 cut(s) 234, 1619
TaaI ACNGT 3 cut(s) 1086, 1250, 1532
TaiI ACGT 3 cut(s) 36, 1210, 1585
TaqI TCGA 9 cut(s) 126, 147, 252, 503, 1285, 1366, 1405, 1448, 1525
TasI AATT 7 cut(s) 200, 217, 241, 269, 290, 1652, 1873
TatI WGTACW 2 cut(s) 1377, 1739
TauI GCSGC 2 cut(s) 620, 1687
TfiI GAWTC 4 cut(s) 254, 317, 876, 1535
Tru1I TTAA 5 cut(s) 927, 993, 1224, 1455, 1769
Tru9I TTAA 5 cut(s) 927, 993, 1224, 1455, 1769
TscAI CASTG 2 cut(s) 1447, 1902
TseI GCWGC 5 cut(s) 694, 1007, 1277, 1412, 1520
TspDTI ATGAA 5 cut(s) 367, 395, 672, 868, 872
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 2 cut(s) 1447, 1902
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 1394
VneI GTGCAC 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 1873
XcmI CCANNNNNNNNNTGG 1 cut(s) 1433
XmiI GTMKAC 2 cut(s) 15, 1350
XmnI GAANNNNTTC 1 cut(s) 1291
XspI CTAG 2 cut(s) 651, 1788
ZrmI AGTACT 2 cut(s) 1379, 1741
Zsp2I ATGCAT 2 cut(s) 889, 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.