Rmu_sc0021028.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021028.1
OG0016362
Physical Location & Seq
Forward (+)
17702 .. 18049
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021028.1_g000004.1.cds

Sequence Viewer

Length: 348 bp
atgataaggaagtttggggacgacaagagtgctctgctggaccaatatgagaggctctctgtggagatacaactcaaccaggccatgttaaagcggagtctctccgagccgactcatcaaactcggtcgcaagcagcacttttgattggtcaaggccttcaagcacccccaccgcagccgccgccattggtcagtaagaaacgtggtggctttggctttcacaaggttctgaagaagatgatcaaacctattattggaagaatgagtggtggcaagaagaagaaagtaccagatgtggaagtcgagcccaggttttggaagacatttagtagatctcttagagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.01

Weight (kDa)

10.71

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09860
prunus_persica Prupe.6G293700_v2.0.a1
pyrus_communis pycom12g17600
rosa_chinensis RchiOBHm_Chr3g0460461
rosa_laevigata RLG00000025003 RLG00000025009
rosa_multiflora Rmu_co8364653.1_g000001 Rmu_sc0004267.1_g000008 Rmu_sc0021028.1_g000004
rosa_roxburghii Rroxscaffold_6G00419460
rosa_rugosa Rorug03G0042800
rosa_samantha Rh3AG100900 Rh3BG104900 Rh3CG106700 Rh3DG106200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 315
AciI CCGC 4 cut(s) 94, 173, 179, 182
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 254, 315
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 2 cut(s) 78, 308
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 2 cut(s) 81, 154
ApeKI GCWGC 2 cut(s) 134, 175
AspS9I GGNCC 1 cut(s) 40
AvaII GGWCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 146, 187
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 2 cut(s) 80, 310
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 104
BglII AGATCT 1 cut(s) 332
BisI GCNGC 4 cut(s) 135, 176, 179, 182
BlsI GCNGC 4 cut(s) 136, 177, 180, 183
Bme1390I CCNGG 2 cut(s) 80, 310
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmrFI CCNGG 2 cut(s) 80, 310
BpiI GAAGAC 1 cut(s) 326
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 315
BseBI CCWGG 2 cut(s) 80, 310
BseDI CCNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 2 cut(s) 254, 315
BseXI GCAGC 2 cut(s) 146, 187
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 83, 156
BsiEI CGRYCG 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 34
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 254, 315
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 2 cut(s) 83, 156
Bsp1286I GDGCHC 2 cut(s) 34, 309
Bsp143I GATC 2 cut(s) 240, 332
BspACI CCGC 4 cut(s) 94, 173, 179, 182
BspANI GGCC 2 cut(s) 83, 156
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 2 cut(s) 240, 332
Bst2UI CCWGG 2 cut(s) 80, 310
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 338
BstKTI GATC 2 cut(s) 243, 335
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 240, 332
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 2 cut(s) 80, 310
BstSCI CCNGG 2 cut(s) 78, 308
BstV1I GCAGC 2 cut(s) 146, 187
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 2 cut(s) 83, 156
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 287
CviAII CATG 1 cut(s) 85
CviJI RGCY 8 cut(s) 55, 83, 109, 156, 178, 210, 216, 307
CviKI_1 RGCY 8 cut(s) 55, 83, 109, 156, 178, 210, 216, 307
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 338
DpnI GATC 2 cut(s) 242, 334
DpnII GATC 2 cut(s) 240, 332
Eco147I AGGCCT 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 78, 308
EcoT38I GRGCYC 1 cut(s) 309
FaeI CATG 1 cut(s) 88
FaiI YATR 2 cut(s) 48, 86
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 32
FatI CATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 4 cut(s) 135, 176, 179, 182
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 4 cut(s) 135, 176, 179, 182
GluI GCNGC 4 cut(s) 135, 176, 179, 182
HaeIII GGCC 2 cut(s) 83, 156
Hin1II CATG 1 cut(s) 88
HinfI GANTC 2 cut(s) 97, 112
Hpy188I TCNGA 2 cut(s) 106, 231
HpyAV CCTTC 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 2 cut(s) 240, 332
LpnPI CCDG 6 cut(s) 23, 65, 92, 295, 303, 322
Lsp1109I GCAGC 2 cut(s) 146, 187
MaeII ACGT 1 cut(s) 202
MalI GATC 2 cut(s) 242, 334
MboI GATC 2 cut(s) 240, 332
MboII GAAGA 6 cut(s) 244, 247, 270, 289, 292, 331
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 34, 309
MlyI GAGTC 2 cut(s) 106, 106
MnlI CCTC 1 cut(s) 45
MseI TTAA 1 cut(s) 89
MspR9I CCNGG 2 cut(s) 80, 310
MvaI CCWGG 2 cut(s) 80, 310
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 2 cut(s) 240, 332
NlaIII CATG 1 cut(s) 88
PceI AGGCCT 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 4 cut(s) 136, 177, 180, 183
PleI GAGTC 2 cut(s) 105, 106
PpsI GAGTC 2 cut(s) 105, 106
Psp6I CCWGG 2 cut(s) 78, 308
PspGI CCWGG 2 cut(s) 78, 308
PspPI GGNCC 1 cut(s) 40
PsuI RGATCY 1 cut(s) 332
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 4 cut(s) 135, 176, 179, 182
Sau3AI GATC 2 cut(s) 240, 332
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 106, 106
ScrFI CCNGG 2 cut(s) 80, 310
SduI GDGCHC 2 cut(s) 34, 309
SetI ASST 4 cut(s) 205, 228, 250, 314
SinI GGWCC 1 cut(s) 40
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 4 cut(s) 94, 173, 179, 182
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 78, 308
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 303
TaqII GACCGA 1 cut(s) 114
TauI GCSGC 2 cut(s) 181, 184
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseI GCWGC 2 cut(s) 134, 175
Van91I CCANNNNNTGG 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.