pycom12g17600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0016362
Physical Location & Seq
Reverse (-)
19987525 .. 19987944
420 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17600.1

Sequence Viewer

Length: 420 bp
ATGGTGGAGGCAAAGAAGGCAATAAAAGAAGTAGTTGAAGCAAAAAATCAAGTGCAAATGTGGAAGTTTGGGGACGACAAGAGCTCTCTGCTCGACCAATTCGAGAGGCTCTCCGTAGACTTGCAACTCAACCAGGCAATGCTGCGTCGGAGTCTCTCCGAGCCGATGTATATTCGGTCTGAGTTTCCTCTTTTACTCACTCAGGCTCCACCAGAACCGTCACGACCACCACCACCACCACCACCATCACCGCCACATTTGGTTACGAAGAAGAGACGTGGCTCGGGGTTTAACAAGGTTCTGAAGAAGATGATCGAACCCATTCTGAGAAGAATGAGTGGCAAAAAGAAGGACTTCCCAATCCCAGAGGCCAAAGACCCCAGGTATTGGAAGACATTTAGTAGATCTGTACGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.11

Weight (kDa)

10.28

Isoelectric Point (pI)

78.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09860
prunus_persica Prupe.6G293700_v2.0.a1
pyrus_communis pycom12g17600
rosa_chinensis RchiOBHm_Chr3g0460461
rosa_laevigata RLG00000025003 RLG00000025009
rosa_multiflora Rmu_co8364653.1_g000001 Rmu_sc0004267.1_g000008 Rmu_sc0021028.1_g000004
rosa_roxburghii Rroxscaffold_6G00419460
rosa_rugosa Rorug03G0042800
rosa_samantha Rh3AG100900 Rh3BG104900 Rh3CG106700 Rh3DG106200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 387
AccI GTMKAC 1 cut(s) 117
AciI CCGC 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 1 cut(s) 38
AjiI CACGTC 1 cut(s) 278
AjnI CCWGG 2 cut(s) 132, 380
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 2 cut(s) 158, 268
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 142
Asp700I GAANNNNTTC 2 cut(s) 321, 353
AsuHPI GGTGA 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 283
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 253
BciT130I CCWGG 2 cut(s) 134, 382
BcoDI GTCTC 2 cut(s) 158, 268
BglII AGATCT 1 cut(s) 404
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 134, 382
BmeT110I CYCGRG 1 cut(s) 283
BmgBI CACGTC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 134, 382
BpiI GAAGAC 1 cut(s) 398
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BsaJI CCNNGG 1 cut(s) 380
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 134, 382
BseDI CCNNGG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 3 cut(s) 171, 215, 317
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 283
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 2 cut(s) 158, 268
BsmBI CGTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 312, 404
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 3 cut(s) 172, 214, 318
BspLI GGNNCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 2 cut(s) 312, 404
Bst2UI CCWGG 2 cut(s) 134, 382
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 180, 201, 326
BstKTI GATC 2 cut(s) 315, 407
BstMAI GTCTC 2 cut(s) 158, 268
BstMBI GATC 2 cut(s) 312, 404
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 134, 382
BstSCI CCNGG 2 cut(s) 132, 380
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 1 cut(s) 371
BtrI CACGTC 1 cut(s) 278
CseI GACGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 410
CviJI RGCY 6 cut(s) 84, 109, 163, 206, 282, 371
CviKI_1 RGCY 6 cut(s) 84, 109, 163, 206, 282, 371
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 3 cut(s) 180, 201, 326
DpnI GATC 2 cut(s) 314, 406
DpnII GATC 2 cut(s) 312, 404
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 84
EcoRII CCWGG 2 cut(s) 132, 380
EcoT38I GRGCYC 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 268
FaiI YATR 1 cut(s) 171
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 86
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 371
HgaI GACGC 1 cut(s) 134
HinfI GANTC 1 cut(s) 151
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 5 cut(s) 150, 160, 181, 303, 327
Hpy188III TCNNGA 2 cut(s) 103, 222
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 2 cut(s) 10, 343
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 55, 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 3 cut(s) 180, 201, 326
HpySE526I ACGT 1 cut(s) 277
Kzo9I GATC 2 cut(s) 312, 404
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 7 cut(s) 119, 146, 188, 225, 367, 378, 394
Lsp1109I GCAGC 1 cut(s) 129
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 219, 262
MalI GATC 2 cut(s) 314, 406
MboI GATC 2 cut(s) 312, 404
MboII GAAGA 6 cut(s) 280, 283, 316, 319, 342, 403
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 1 cut(s) 98
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 3 cut(s) 99, 198, 361
MroXI GAANNNNTTC 2 cut(s) 321, 353
MseI TTAA 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 134, 382
MvaI CCWGG 2 cut(s) 134, 382
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 2 cut(s) 312, 404
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 2 cut(s) 321, 353
PflMI CCANNNNNTGG 1 cut(s) 387
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 132, 380
PspGI CCWGG 2 cut(s) 132, 380
PspN4I GGNNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SacI GAGCTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 2 cut(s) 312, 404
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 134, 382
SduI GDGCHC 1 cut(s) 86
SetI ASST 4 cut(s) 86, 280, 300, 386
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 251
SstI GAGCTC 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 132, 380
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 280
TaqI TCGA 3 cut(s) 93, 102, 315
TaqII GACCGA 1 cut(s) 165
TasI AATT 1 cut(s) 98
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 387
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 2 cut(s) 321, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.