FvH4_6g12620

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016875
Physical Location & Seq
Forward (+)
7631383 .. 7631802
420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12620.t1

Sequence Viewer

Length: 420 bp
ATGGATATGAACATGACGATGAACAATATGACGATGGATATGACTATGCAGATGAATTTCTACTGGGGCAGAAACGTCACTATCCTCTTCTCTAAGTGGCCTGGAAACGACCAACACAACCCAGGCATGTACATATTGGCTCTCTTCTTTGTGTTTGCCATGGCCTTTGCAATGGAAGCTTTGTCCGTCTGGCCGACTATCAAGCCCGGCGGAAGTGCGGTTGCGATAGGGCTGACTCAGGCTTCTCTTTACGCGATTCGCGTCAGCTTGGGTTACTTTGTGATGCTCGCAGTTATGTCCTACAACATTGGAATTTTCATAGCAGCCGTGGCTGGACACACGGTTGGATTGTTTGTAGCCAAGACTAGTGCTCTTGCCATGACCAAGCCTTCAGAGTTCGAACCTTCAACGAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

140

Amino Acids

15.27

Weight (kDa)

6.7

Isoelectric Point (pI)

24.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 78 - 119 1.4e-10 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016875)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12620
malus_domestica MD04G1140500.v1.1 MD12G1155900.v1.1
prunus_persica Prupe.6G265600_v2.0.a1
pyrus_communis pycom04g12810
rosa_chinensis RchiOBHm_Chr3g0464471
rosa_laevigata RLG00000024694
rosa_multiflora Rmu_sc0003074.1_g000011
rosa_roxburghii Rroxscaffold_6G00415640
rosa_rugosa Rorug03G0072400
rosa_samantha Rh3BG134600 Rh3CG137100 Rh3DG135900
rosa_wichuraiana Rw3G011000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 254, 261
AciI CCGC 2 cut(s) 210, 218
AcoI YGGCCR 1 cut(s) 191
AcsI RAATTY 2 cut(s) 55, 312
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 1 cut(s) 131
AgsI TTSAA 1 cut(s) 408
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 2 cut(s) 100, 121
AluBI AGCT 2 cut(s) 179, 267
AluI AGCT 2 cut(s) 179, 267
Alw21I GWGCWC 1 cut(s) 373
AoxI GGCC 3 cut(s) 98, 162, 191
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 2 cut(s) 55, 312
AsuC2I CCSGG 1 cut(s) 207
AsuII TTCGAA 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 335
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 2 cut(s) 102, 123
BcnI CCSGG 1 cut(s) 207
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 1 cut(s) 366
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 3 cut(s) 102, 123, 207
BmrFI CCNGG 3 cut(s) 102, 123, 207
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 121, 159, 327
Bse1I ACTGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 2 cut(s) 102, 123
BseDI CCNNGG 3 cut(s) 121, 159, 327
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 335
Bsh1236I CGCG 2 cut(s) 254, 261
BshFI GGCC 3 cut(s) 100, 164, 193
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 207
BsnI GGCC 3 cut(s) 100, 164, 193
Bsp119I TTCGAA 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 129
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 2 cut(s) 210, 218
BspANI GGCC 3 cut(s) 100, 164, 193
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 2 cut(s) 254, 261
BspT104I TTCGAA 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 129
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 121, 159, 327
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 102, 123
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 92, 149
BstAUI TGTACA 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 93, 237
BstDSI CCRYGG 2 cut(s) 159, 327
BstFNI CGCG 2 cut(s) 254, 261
BstMWI GCNNNNNNNGC 2 cut(s) 176, 329
BstNI CCWGG 2 cut(s) 102, 123
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 3 cut(s) 100, 121, 205
BstUI CGCG 2 cut(s) 254, 261
BstV1I GCAGC 1 cut(s) 335
BsuRI GGCC 3 cut(s) 100, 164, 193
BtgI CCRYGG 2 cut(s) 159, 327
Cac8I GCNNGC 1 cut(s) 288
CseI GACGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 130
CviAII CATG 4 cut(s) 13, 127, 160, 379
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 2 cut(s) 93, 237
EaeI YGGCCR 1 cut(s) 191
Eam1104I CTCTTC 2 cut(s) 92, 149
EarI CTCTTC 2 cut(s) 92, 149
EciI GGCGGA 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 100, 121
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 4 cut(s) 16, 130, 163, 382
FatI CATG 4 cut(s) 12, 126, 159, 378
Fnu4HI GCNGC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 366
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 3 cut(s) 100, 164, 193
HapII CCGG 1 cut(s) 207
HgaI GACGC 1 cut(s) 250
Hin1II CATG 4 cut(s) 16, 130, 163, 382
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 2 cut(s) 235, 256
HpaII CCGG 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 399, 414
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 49, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 329
HpyF3I CTNAG 2 cut(s) 93, 237
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 16, 130, 163, 382
LpnPI CCDG 9 cut(s) 49, 87, 108, 114, 135, 175, 220, 224, 318
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 1 cut(s) 273
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 76, 272
MboII GAAGA 2 cut(s) 79, 136
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 2 cut(s) 55, 312
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 3 cut(s) 102, 123, 207
MvaI CCWGG 2 cut(s) 102, 123
MvnI CGCG 2 cut(s) 254, 261
MwoI GCNNNNNNNGC 2 cut(s) 176, 329
NciI CCSGG 1 cut(s) 207
NcoI CCATGG 1 cut(s) 159
NlaIII CATG 4 cut(s) 16, 130, 163, 382
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 130
NspV TTCGAA 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 100, 121
PspGI CCWGG 2 cut(s) 100, 121
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 17
SatI GCNGC 1 cut(s) 324
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 3 cut(s) 102, 123, 207
SduI GDGCHC 1 cut(s) 373
SetI ASST 4 cut(s) 78, 181, 269, 406
SfaNI GCATC 1 cut(s) 273
SfuI TTCGAA 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 17
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 2 cut(s) 55, 312
SsiI CCGC 2 cut(s) 210, 218
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 3 cut(s) 100, 121, 205
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 399
TasI AATT 2 cut(s) 55, 312
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 1 cut(s) 256
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 4 cut(s) 23, 35, 68, 307
TspGWI ACGGA 1 cut(s) 175
XapI RAATTY 2 cut(s) 55, 312
XceI RCATGY 1 cut(s) 130
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.