Rw3G011000

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016875
Physical Location & Seq
Forward (+)
10637670 .. 10638065
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011000.1

Sequence Viewer

Length: 396 bp
ATGACGATGAACAGTACGACTATGACTATGCAGATGAGTTTCTACTGGGGCAGAAACGTCACTATCCTCTTCTCTAAGTGGCCTGGAAACGACCAACATAACCCAGGCATGTACATATTGGCCATCTTCTTTGTGTTTGCTATAGCCTTTGCCATGGAAGCTTTGTCCGTCTGGCCGACTATCAAGCCCAGCAGGAGTTCGGTAGTCGCAGGCCTGGCTCAGGCTTTTCTTTACGCCATTCGCATCAGCTTGGGTTACTTTGTGATGCTTGCCGTTATGTCCTACAACATTGGAATCTTCATAGCAGCCGTGGCGGGCCACACGGTTGGGTTCTTTGTTGCCAAGGCTAGTGCTCTTTCCATTACCAAGCCTCCAGGACCCGAACCTTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

131

Amino Acids

14.35

Weight (kDa)

9.7

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 61 - 113 2.3e-12 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016875)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12620
malus_domestica MD04G1140500.v1.1 MD12G1155900.v1.1
prunus_persica Prupe.6G265600_v2.0.a1
pyrus_communis pycom04g12810
rosa_chinensis RchiOBHm_Chr3g0464471
rosa_laevigata RLG00000024694
rosa_multiflora Rmu_sc0003074.1_g000011
rosa_roxburghii Rroxscaffold_6G00415640
rosa_rugosa Rorug03G0072400
rosa_samantha Rh3BG134600 Rh3CG137100 Rh3DG135900
rosa_wichuraiana Rw3G011000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 120, 173
AfaI GTAC 2 cut(s) 16, 113
AfiI CCNNNNNNNGG 1 cut(s) 220
AjnI CCWGG 4 cut(s) 82, 103, 213, 373
AluBI AGCT 2 cut(s) 161, 249
AluI AGCT 2 cut(s) 161, 249
Alw21I GWGCWC 1 cut(s) 355
AoxI GGCC 5 cut(s) 80, 120, 173, 211, 316
ApeKI GCWGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 316, 377
AvaII GGWCC 1 cut(s) 377
BalI TGGCCA 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 131
BceAI ACGGC 2 cut(s) 257, 293
BciT130I CCWGG 4 cut(s) 84, 105, 215, 375
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 4 cut(s) 84, 105, 215, 375
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 316, 377
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 4 cut(s) 84, 105, 215, 375
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 2 cut(s) 252, 255
BmuI ACTGGG 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 219
BsaJI CCNNGG 4 cut(s) 103, 153, 309, 342
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 4 cut(s) 84, 105, 215, 375
BseDI CCNNGG 4 cut(s) 103, 153, 309, 342
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 317
BseYI CCCAGC 1 cut(s) 188
BshFI GGCC 5 cut(s) 82, 122, 175, 213, 318
BsiHKAI GWGCWC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 220
BsnI GGCC 5 cut(s) 82, 122, 175, 213, 318
Bsp1286I GDGCHC 1 cut(s) 355
Bsp1407I TGTACA 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 314
BspANI GGCC 5 cut(s) 82, 122, 175, 213, 318
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 379
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 4 cut(s) 103, 153, 309, 342
BssT1I CCWWGG 2 cut(s) 153, 342
Bst2UI CCWGG 4 cut(s) 84, 105, 215, 375
Bst4CI ACNGT 2 cut(s) 14, 325
Bst6I CTCTTC 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 211, 270, 316
BstDEI CTNAG 2 cut(s) 75, 219
BstDSI CCRYGG 2 cut(s) 153, 309
BstENI CCTNNNNNAGG 1 cut(s) 218
BstMWI GCNNNNNNNGC 3 cut(s) 158, 215, 311
BstNI CCWGG 4 cut(s) 84, 105, 215, 375
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 4 cut(s) 82, 103, 213, 373
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 317
BstXI CCANNNNNNTGG 1 cut(s) 326
BsuRI GGCC 5 cut(s) 82, 122, 175, 213, 318
BtgI CCRYGG 2 cut(s) 153, 309
Cac8I GCNNGC 3 cut(s) 211, 270, 316
Cfr13I GGNCC 2 cut(s) 316, 377
Csp6I GTAC 2 cut(s) 15, 112
CviAII CATG 2 cut(s) 109, 154
CviQI GTAC 2 cut(s) 15, 112
DdeI CTNAG 2 cut(s) 75, 219
EaeI YGGCCR 2 cut(s) 120, 173
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 2 cut(s) 153, 342
Eco147I AGGCCT 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 4 cut(s) 82, 103, 213, 373
EcoT14I CCWWGG 2 cut(s) 153, 342
ErhI CCWWGG 2 cut(s) 153, 342
FaeI CATG 2 cut(s) 112, 157
FaiI YATR 9 cut(s) 23, 29, 99, 110, 116, 143, 155, 278, 302
FatI CATG 2 cut(s) 108, 153
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 5 cut(s) 82, 122, 175, 213, 318
Hin1II CATG 2 cut(s) 112, 157
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 14, 325
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 215, 311
HpyF3I CTNAG 2 cut(s) 75, 219
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 112, 157
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 2 cut(s) 252, 255
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 58, 254
MboII GAAGA 3 cut(s) 61, 118, 289
MhlI GDGCHC 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 122
MnlI CCTC 2 cut(s) 77, 381
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspR9I CCNGG 4 cut(s) 84, 105, 215, 375
MvaI CCWGG 4 cut(s) 84, 105, 215, 375
MwoI GCNNNNNNNGC 3 cut(s) 158, 215, 311
NcoI CCATGG 1 cut(s) 153
NlaIII CATG 2 cut(s) 112, 157
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 112
PceI AGGCCT 1 cut(s) 213
PfeI GAWTC 1 cut(s) 294
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 1 cut(s) 307
PpuMI RGGWCCY 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 377
Psp6I CCWGG 4 cut(s) 82, 103, 213, 373
PspFI CCCAGC 1 cut(s) 188
PspGI CCWGG 4 cut(s) 82, 103, 213, 373
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 316, 377
PspPPI RGGWCCY 1 cut(s) 377
RsaI GTAC 2 cut(s) 16, 113
RsaNI GTAC 2 cut(s) 15, 112
SatI GCNGC 1 cut(s) 306
Sau96I GGNCC 2 cut(s) 316, 377
ScrFI CCNGG 4 cut(s) 84, 105, 215, 375
SduI GDGCHC 1 cut(s) 355
SetI ASST 4 cut(s) 60, 163, 251, 388
SfaNI GCATC 2 cut(s) 252, 255
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 1 cut(s) 377
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 1 cut(s) 314
SspMI CTAG 1 cut(s) 348
StuI AGGCCT 1 cut(s) 213
StyD4I CCNGG 4 cut(s) 82, 103, 213, 373
StyI CCWWGG 2 cut(s) 153, 342
TaaI ACNGT 2 cut(s) 14, 325
TaiI ACGT 1 cut(s) 60
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 294
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 3 cut(s) 23, 289, 378
TspGWI ACGGA 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 377
XagI CCTNNNNNAGG 1 cut(s) 218
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.