Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016875

Physical Location & Seq

Genomic Coordinates Reverse (-)

25416854 .. 25417244

Gene Structure 391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G265600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAACATGCAGATGAGCTTCCACTGGGGAAATGAGGCCACAATTCTATTCACTGGGTGGCCTAACCAAACCACTGGCATGTACATATTGGCACTCTTCTTTGTGTTTGTGCTGGCCTTTGCTAAGGAAGCTTTGTCTGTGTGGCCCATTATTAAACAAACCACCAATCCGATGGTGGCCGGGATTGCTCAGGCCTCTGTTTACTCTGTTCGAGTCGGCATGGGCTACTTGGTCATGCTCGCTGTCATGTCTTTCAACGTCGGGATCTTCATAGCCGCGGTGGCAGGCCACACCTTTGGGGACTTGGTAGTCAAGGCCAGTTCTCTAGCTCTGGCCAAACCTTCCCAGCCTGAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01524 ko04978 map01524 map04978

Pfam Domains

Protein Families

Ctr

Protein Analysis

120

Amino Acids

12.88

Weight (kDa)

8.11

Isoelectric Point (pI)

21.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016875)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12620
malus_domestica	MD04G1140500.v1.1 MD12G1155900.v1.1
prunus_persica	Prupe.6G265600_v2.0.a1
pyrus_communis	pycom04g12810
rosa_chinensis	RchiOBHm_Chr3g0464471
rosa_laevigata	RLG00000024694
rosa_multiflora	Rmu_sc0003074.1_g000011
rosa_roxburghii	Rroxscaffold_6G00415640
rosa_rugosa	Rorug03G0072400
rosa_samantha	Rh3BG134600 Rh3CG137100 Rh3DG135900
rosa_wichuraiana	Rw3G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AccII	CGCG	1 cut(s)	278
AciI	CCGC	2 cut(s)	276, 278
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	2 cut(s)	177, 333
AdeI	CACNNNGTG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	3 cut(s)	18, 131, 329
AluI	AGCT	3 cut(s)	18, 131, 329
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	9 cut(s)	36, 59, 114, 143, 177, 192, 286, 315, 333
AspS9I	GGNCC	1 cut(s)	144
AsuC2I	CCSGG	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	335
BccI	CCATC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	181
BfaI	CTAG	1 cut(s)	326
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	181
BmrI	ACTGGG	2 cut(s)	34, 63
BmuI	ACTGGG	2 cut(s)	34, 63
Bpu10I	CCTNAGC	2 cut(s)	123, 189
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	276
Bse1I	ACTGG	4 cut(s)	29, 58, 79, 318
BseDI	CCNNGG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	4 cut(s)	29, 58, 79, 318
BseYI	CCCAGC	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	9 cut(s)	38, 61, 116, 145, 179, 194, 288, 317, 335
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	9 cut(s)	38, 61, 116, 145, 179, 194, 288, 317, 335
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	2 cut(s)	276, 278
BspANI	GGCC	9 cut(s)	38, 61, 116, 145, 179, 194, 288, 317, 335
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	278
BspPI	GGATC	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	4 cut(s)	29, 58, 79, 318
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	114, 240, 286
BstDEI	CTNAG	2 cut(s)	123, 189
BstDSI	CCRYGG	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 185, 281
BstNSI	RCATGY	2 cut(s)	10, 82
BstSCI	CCNGG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	264
BstXI	CCANNNNNNTGG	3 cut(s)	74, 172, 296
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	9 cut(s)	38, 61, 116, 145, 179, 194, 288, 317, 335
BtgI	CCRYGG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	22, 51, 72
Cac8I	GCNNGC	3 cut(s)	114, 240, 286
Cfr13I	GGNCC	1 cut(s)	144
Cfr42I	CCGCGG	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	5 cut(s)	7, 79, 220, 235, 247
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	123, 189
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
DraIII	CACNNNGTG	1 cut(s)	57
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
EaeI	YGGCCR	2 cut(s)	177, 333
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco147I	AGGCCT	1 cut(s)	194
FaeI	CATG	5 cut(s)	10, 82, 223, 238, 250
FaiI	YATR	7 cut(s)	8, 80, 86, 221, 236, 248, 272
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	5 cut(s)	6, 78, 219, 234, 246
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	349
HaeIII	GGCC	9 cut(s)	38, 61, 116, 145, 179, 194, 288, 317, 335
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	5 cut(s)	10, 82, 223, 238, 250
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	1 cut(s)	213
HpaII	CCGG	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	171, 359
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	351
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 185, 281
HpyF3I	CTNAG	2 cut(s)	123, 189
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	10, 82, 223, 238, 250
KspI	CCGCGG	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	264
LpnPI	CCDG	9 cut(s)	10, 39, 60, 98, 176, 193, 270, 317, 331
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	258
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	2 cut(s)	88, 259
MflI	RGATCY	1 cut(s)	264
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	1 cut(s)	42
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	28, 205
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	2 cut(s)	11, 77
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	128, 185, 281
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	5 cut(s)	10, 82, 223, 238, 250
NspI	RCATGY	2 cut(s)	10, 82
PceI	AGGCCT	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	2 cut(s)	11, 77
SacII	CCGCGG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	6 cut(s)	20, 133, 261, 296, 331, 343
Sfr303I	CCGCGG	1 cut(s)	279
SgrBI	CCGCGG	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	11, 77
Sse9I	AATT	1 cut(s)	42
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	276, 278
SspMI	CTAG	1 cut(s)	326
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	179
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	211
TasI	AATT	1 cut(s)	42
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	3 cut(s)	29, 58, 79
TspDTI	ATGAA	2 cut(s)	17, 259
TspRI	CASTG	3 cut(s)	29, 58, 79
XceI	RCATGY	2 cut(s)	10, 82
XcmI	CCANNNNNNNNNTGG	2 cut(s)	169, 172
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.