Rorug03G0072400

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016875
Physical Location & Seq
Reverse (-)
5761065 .. 5764765
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0072400.1

Sequence Viewer

Length: 660 bp
ATGGACGGTGATTCATGGAGCGCTCGTCTTTCCACCGCCTCAAAGCGTTACCAATCCGCTCTTCAATCTCGATCTGATATGTTCATGGGATTTGAAGAAATTGATGGAGATGACGATATAAGGGAGGAATTTCCATGCCCATTTTGCTCAGAATACTATGATATTGTAGGATTGTGCTGTCACATAGATGAAGAGCACCCGGTGGAGGCAAAGAATGGGGTGTGCCCAGTTTGTTCATTGAGGGTGGGGATTGATATGGTTGCGCACATTACCCTACAACATGGAAATATATTCAAGATGCAGCGCAAGAGGAAAACACGGAAAGGTGGAGCTCATTCAACACTGTCATTGTTGAGGAAAGAGCTGCGGGAAGGAAACTTGCAGTCTCTTTTTGGGGGCTCTTCCTGTTTACTTTCCTCATCCAATGTAGCAGCTGATCCATTGTTGTCATCATTTATTCTACCCATGGCTGATGATTTTGTCAGTGTTCAGCCTCACTTTTCAACGGAAACAAGCTTAGCCAAGAAAAGCACAGAGAAAGTATTAGAACGAAATGTGAAGTCACCTCCTTTGTCTGTCAAGGATAAGGAAGAGAAAGCAAAAAGATGTGCATTTGTTCAGGGGCTGTTGTTGTCCACCATCCCTGATGACAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

219

Amino Acids

24.35

Weight (kDa)

6.09

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Di19 PF05605 42 - 95 8e-24 Drought induced 19 protein (Di19), zinc-binding
Di19_C PF14571 115 - 214 3.2e-37 Stress-induced protein Di19, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016875)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12620
malus_domestica MD04G1140500.v1.1 MD12G1155900.v1.1
prunus_persica Prupe.6G265600_v2.0.a1
pyrus_communis pycom04g12810
rosa_chinensis RchiOBHm_Chr3g0464471
rosa_laevigata RLG00000024694
rosa_multiflora Rmu_sc0003074.1_g000011
rosa_roxburghii Rroxscaffold_6G00415640
rosa_rugosa Rorug03G0072400
rosa_samantha Rh3BG134600 Rh3CG137100 Rh3DG135900
rosa_wichuraiana Rw3G011000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 264
AccBSI CCGCTC 1 cut(s) 59
AciI CCGC 3 cut(s) 36, 57, 367
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 202
AfeI AGCGCT 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 5 cut(s) 65, 95, 295, 339, 504
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 4 cut(s) 332, 364, 434, 516
AluI AGCT 4 cut(s) 332, 364, 434, 516
Alw21I GWGCWC 2 cut(s) 198, 334
Alw26I GTCTC 1 cut(s) 390
AlwI GGATC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 625
Aor51HI AGCGCT 1 cut(s) 22
ApeKI GCWGC 3 cut(s) 301, 364, 431
ApoI RAATTY 1 cut(s) 128
AspLEI GCGC 3 cut(s) 23, 265, 306
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 20, 555
BaeGI GKGCMC 1 cut(s) 227
BanII GRGCYC 2 cut(s) 334, 401
Bbv12I GWGCWC 2 cut(s) 198, 334
BbvI GCAGC 3 cut(s) 313, 351, 443
BccI CCATC 2 cut(s) 98, 647
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 3 cut(s) 302, 365, 432
BlpI GCTNAGC 1 cut(s) 517
BlsI GCNGC 3 cut(s) 303, 366, 433
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 517
BpuMI CCSGG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 419, 639
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 3 cut(s) 313, 351, 443
BsiHKAI GWGCWC 2 cut(s) 198, 334
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 390
Bsp1286I GDGCHC 4 cut(s) 198, 227, 334, 401
Bsp143I GATC 2 cut(s) 71, 436
Bsp1720I GCTNAGC 1 cut(s) 517
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 3 cut(s) 36, 57, 367
BspCNI CTCAG 1 cut(s) 161
BspPI GGATC 1 cut(s) 431
BspQI GCTCTTC 3 cut(s) 66, 186, 406
BsrBI CCGCTC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 2 cut(s) 71, 436
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 8, 345
Bst6I CTCTTC 4 cut(s) 66, 186, 406, 585
BstDEI CTNAG 2 cut(s) 148, 517
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 419, 639
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 3 cut(s) 23, 265, 306
BstKTI GATC 2 cut(s) 74, 439
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 2 cut(s) 71, 436
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 313, 351, 443
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 2 cut(s) 419, 639
BtsIMutI CAGTG 2 cut(s) 341, 490
CaiI CAGNNNCTG 1 cut(s) 625
CfoI GCGC 3 cut(s) 23, 265, 306
CviAII CATG 5 cut(s) 15, 85, 135, 281, 466
CviJI RGCY 9 cut(s) 332, 364, 399, 434, 470, 493, 516, 521, 625
CviKI_1 RGCY 9 cut(s) 332, 364, 399, 434, 470, 493, 516, 521, 625
DdeI CTNAG 2 cut(s) 148, 517
DpnI GATC 2 cut(s) 73, 438
DpnII GATC 2 cut(s) 71, 436
DraIII CACNNNGTG 1 cut(s) 202
Eam1104I CTCTTC 4 cut(s) 66, 186, 406, 585
EarI CTCTTC 4 cut(s) 66, 186, 406, 585
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 2 cut(s) 334, 401
Eco47III AGCGCT 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 334, 401
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 5 cut(s) 18, 88, 138, 284, 469
FatI CATG 5 cut(s) 14, 84, 134, 280, 465
FauI CCCGC 1 cut(s) 360
Fnu4HI GCNGC 3 cut(s) 302, 365, 432
FokI GGATG 2 cut(s) 406, 626
FriOI GRGCYC 2 cut(s) 334, 401
Fsp4HI GCNGC 3 cut(s) 302, 365, 432
FspI TGCGCA 1 cut(s) 264
GlaI GCGC 3 cut(s) 22, 264, 305
GluI GCNGC 3 cut(s) 302, 365, 432
HaeII RGCGCY 1 cut(s) 24
HapII CCGG 1 cut(s) 200
HhaI GCGC 3 cut(s) 23, 265, 306
Hin1II CATG 5 cut(s) 18, 88, 138, 284, 469
Hin6I GCGC 3 cut(s) 21, 263, 304
HinP1I GCGC 3 cut(s) 21, 263, 304
HindIII AAGCTT 1 cut(s) 514
HinfI GANTC 1 cut(s) 11
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 20, 555
Hpy166II GTNNAC 2 cut(s) 410, 636
Hpy188I TCNGA 2 cut(s) 76, 151
Hpy188III TCNNGA 2 cut(s) 69, 295
Hpy8I GTNNAC 2 cut(s) 410, 636
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 2 cut(s) 8, 345
HpyCH4V TGCA 3 cut(s) 301, 382, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 148, 517
Hsp92II CATG 5 cut(s) 18, 88, 138, 284, 469
HspAI GCGC 3 cut(s) 21, 263, 304
Kzo9I GATC 2 cut(s) 71, 436
LguI GCTCTTC 3 cut(s) 66, 186, 406
LmnI GCTCC 2 cut(s) 18, 329
LpnPI CCDG 5 cut(s) 213, 240, 418, 605, 637
Lsp1109I GCAGC 3 cut(s) 313, 351, 443
LweI GCATC 1 cut(s) 288
MaeIII GTNAC 3 cut(s) 47, 179, 561
MalI GATC 2 cut(s) 73, 438
MbiI CCGCTC 1 cut(s) 59
MboI GATC 2 cut(s) 71, 436
MboII GAAGA 5 cut(s) 53, 107, 203, 393, 602
MhlI GDGCHC 4 cut(s) 198, 227, 334, 401
MluCI AATT 2 cut(s) 99, 128
MnlI CCTC 9 cut(s) 49, 118, 199, 234, 303, 348, 427, 504, 576
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 200
NcoI CCATGG 1 cut(s) 465
NdeII GATC 2 cut(s) 71, 436
NlaIII CATG 5 cut(s) 18, 88, 138, 284, 469
NmuCI GTSAC 2 cut(s) 179, 561
NsbI TGCGCA 1 cut(s) 264
PciSI GCTCTTC 3 cut(s) 66, 186, 406
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 3 cut(s) 303, 366, 433
Psp124BI GAGCTC 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 334
SapI GCTCTTC 3 cut(s) 66, 186, 406
SatI GCNGC 3 cut(s) 302, 365, 432
Sau3AI GATC 2 cut(s) 71, 436
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 4 cut(s) 198, 227, 334, 401
SetI ASST 7 cut(s) 328, 334, 366, 436, 518, 568, 656
SfaNI GCATC 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 2 cut(s) 99, 128
SsiI CCGC 3 cut(s) 36, 57, 367
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 8, 345
TaqI TCGA 1 cut(s) 70
TasI AATT 2 cut(s) 99, 128
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 2 cut(s) 348, 490
TseFI GTSAC 2 cut(s) 179, 561
TseI GCWGC 3 cut(s) 301, 364, 431
Tsp45I GTSAC 2 cut(s) 179, 561
TspDTI ATGAA 3 cut(s) 73, 204, 225
TspGWI ACGGA 2 cut(s) 334, 521
TspRI CASTG 2 cut(s) 348, 490
XapI RAATTY 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.