Rh3BG134600

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016875
Physical Location & Seq
Forward (+)
11392948 .. 11393588
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG134600.1

Sequence Viewer

Length: 411 bp
ATGGATATGATGAACATGACGATGAACAGTACGACTATGACTATGCAGATGAGTTTCTACTGGGGCAGAAACGTCACTATCCTCTTCTCCAAGTGGCCTGGAAACGACCAACATAACCCAGGCATGTACATATTGGCCCTCTTCTTTGTGTTTGCTATAGCCTTTGCCATGGAGCCTTTGTCCGTCTGGCCGACTATCAAGCCCAGCGGGAGTTCGGTAGTCGCAGGCCTGGCTCAGGCTTTTCTTTACGCCATTCGCATCAGCTTGGGTTACTTTGTGATGCTTGCCGTTATGTCCTACAACATTGGAATCTTCATAGCAGCTGTGGCGGGCCACACGGTTGGGTTCTTTGTTGCCAAGGCTAGTGCTCTTTCCATTACCAAGCCTCCGGGACCCGAACCTTCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

136

Amino Acids

14.9

Weight (kDa)

9.1

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 71 - 118 9.6e-12 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016875)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12620
malus_domestica MD04G1140500.v1.1 MD12G1155900.v1.1
prunus_persica Prupe.6G265600_v2.0.a1
pyrus_communis pycom04g12810
rosa_chinensis RchiOBHm_Chr3g0464471
rosa_laevigata RLG00000024694
rosa_multiflora Rmu_sc0003074.1_g000011
rosa_roxburghii Rroxscaffold_6G00415640
rosa_rugosa Rorug03G0072400
rosa_samantha Rh3BG134600 Rh3CG137100 Rh3DG135900
rosa_wichuraiana Rw3G011000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 207, 329
AcoI YGGCCR 1 cut(s) 188
AfaI GTAC 2 cut(s) 31, 128
AfiI CCNNNNNNNGG 1 cut(s) 235
AjnI CCWGG 3 cut(s) 97, 118, 228
AluBI AGCT 2 cut(s) 264, 323
AluI AGCT 2 cut(s) 264, 323
Alw21I GWGCWC 1 cut(s) 370
AoxI GGCC 5 cut(s) 95, 135, 188, 226, 331
ApeKI GCWGC 1 cut(s) 320
AspS9I GGNCC 3 cut(s) 136, 331, 392
AsuC2I CCSGG 1 cut(s) 390
AvaII GGWCC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 272
BciT130I CCWGG 3 cut(s) 99, 120, 230
BcnI CCSGG 1 cut(s) 390
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 4 cut(s) 99, 120, 230, 390
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 136, 331, 392
BmiI GGNNCC 3 cut(s) 174, 393, 394
BmrFI CCNGG 4 cut(s) 99, 120, 230, 390
BmrI ACTGGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 267, 270
BmuI ACTGGG 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 390
BsaJI CCNNGG 3 cut(s) 118, 168, 357
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 370, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 65
BseBI CCWGG 3 cut(s) 99, 120, 230
BseDI CCNNGG 3 cut(s) 118, 168, 357
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 332
BseYI CCCAGC 1 cut(s) 203
BshFI GGCC 5 cut(s) 97, 137, 190, 228, 333
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 5 cut(s) 97, 137, 190, 228, 333
Bsp1286I GDGCHC 1 cut(s) 370
Bsp1407I TGTACA 1 cut(s) 126
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 2 cut(s) 207, 329
BspANI GGCC 5 cut(s) 97, 137, 190, 228, 333
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 3 cut(s) 174, 393, 394
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 118, 168, 357
BssT1I CCWWGG 2 cut(s) 168, 357
Bst2UI CCWGG 3 cut(s) 99, 120, 230
Bst4CI ACNGT 2 cut(s) 29, 340
Bst6I CTCTTC 2 cut(s) 89, 146
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 226, 285, 331
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 168
BstENI CCTNNNNNAGG 1 cut(s) 233
BstMWI GCNNNNNNNGC 2 cut(s) 230, 326
BstNI CCWGG 3 cut(s) 99, 120, 230
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 4 cut(s) 97, 118, 228, 388
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 332
BstXI CCANNNNNNTGG 1 cut(s) 341
BsuRI GGCC 5 cut(s) 97, 137, 190, 228, 333
BtgI CCRYGG 1 cut(s) 168
Cac8I GCNNGC 3 cut(s) 226, 285, 331
Cfr13I GGNCC 3 cut(s) 136, 331, 392
Csp6I GTAC 2 cut(s) 30, 127
CviAII CATG 3 cut(s) 16, 124, 169
CviQI GTAC 2 cut(s) 30, 127
DdeI CTNAG 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 89, 146
EarI CTCTTC 2 cut(s) 89, 146
Eco130I CCWWGG 2 cut(s) 168, 357
Eco147I AGGCCT 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 392
EcoRII CCWGG 3 cut(s) 97, 118, 228
EcoT14I CCWWGG 2 cut(s) 168, 357
ErhI CCWWGG 2 cut(s) 168, 357
FaeI CATG 3 cut(s) 19, 127, 172
FaqI GGGAC 1 cut(s) 405
FatI CATG 3 cut(s) 15, 123, 168
FauI CCCGC 2 cut(s) 200, 322
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 321
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 5 cut(s) 97, 137, 190, 228, 333
HapII CCGG 1 cut(s) 389
Hin1II CATG 3 cut(s) 19, 127, 172
HinfI GANTC 1 cut(s) 309
HpaII CCGG 1 cut(s) 389
Hpy188I TCNGA 1 cut(s) 410
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 2 cut(s) 29, 340
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 326
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 3 cut(s) 19, 127, 172
KflI GGGWCCC 1 cut(s) 392
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 2 cut(s) 267, 270
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 73, 269
MboII GAAGA 3 cut(s) 76, 133, 304
MhlI GDGCHC 1 cut(s) 370
MnlI CCTC 3 cut(s) 92, 149, 396
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 2 cut(s) 207, 323
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 4 cut(s) 99, 120, 230, 390
MvaI CCWGG 3 cut(s) 99, 120, 230
MwoI GCNNNNNNNGC 2 cut(s) 230, 326
NciI CCSGG 1 cut(s) 390
NcoI CCATGG 1 cut(s) 168
NlaIII CATG 3 cut(s) 19, 127, 172
NlaIV GGNNCC 3 cut(s) 174, 393, 394
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 127
PceI AGGCCT 1 cut(s) 228
PfeI GAWTC 1 cut(s) 309
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 1 cut(s) 322
PpuMI RGGWCCY 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 392
Psp6I CCWGG 3 cut(s) 97, 118, 228
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 3 cut(s) 97, 118, 228
PspN4I GGNNCC 3 cut(s) 174, 393, 394
PspPI GGNCC 3 cut(s) 136, 331, 392
PspPPI RGGWCCY 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 31, 128
RsaNI GTAC 2 cut(s) 30, 127
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 1 cut(s) 321
Sau96I GGNCC 3 cut(s) 136, 331, 392
ScrFI CCNGG 4 cut(s) 99, 120, 230, 390
SduI GDGCHC 1 cut(s) 370
SetI ASST 4 cut(s) 75, 266, 325, 403
SfaNI GCATC 2 cut(s) 267, 270
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 20
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 2 cut(s) 207, 329
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 4 cut(s) 97, 118, 228, 388
StyI CCWWGG 2 cut(s) 168, 357
TaaI ACNGT 2 cut(s) 29, 340
TaiI ACGT 1 cut(s) 75
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 309
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 4 cut(s) 26, 38, 304, 393
TspGWI ACGGA 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 233
XceI RCATGY 1 cut(s) 127
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.