RLG00000024694

Copper transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016875
Physical Location & Seq
Reverse (-)
38262231 .. 38262605
375 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024694

Sequence Viewer

Length: 375 bp
ATGACTATGCAGATGAGTTTCTACTGGGGCAGAAACGTCACTATCCTCTTCTCTAAGTGGCCTGGAAACGACCAACATAACCCAGGCATGTACCTATTGGCTCTCTTGTTTGTGTTTGCTATAGCCTTTGCCATGGAAGCTTTGTCCGTCTGGCCGACTATCAAGCCCAGCAGGAGTTCGGTAGTCGCAGGCCTGGCTCAGGCTTTTCTTTACGCCATTCGCATCAGCTTGGGTTACTTTGTGATGCTTGCCGTTATGTCCTACAACATTGGAGTCTTCATAGCAGCCGTGGCTGGCCACACGGTTGGGTTCTTTGTTGCCAAGGCTAGTGCTCTTTCCATTACCAAGCCTCCGGGGCCCGAACCTTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko01524 ko04978 map01524 map04978
Pfam Domains
Protein Families
Ctr

Protein Analysis

125

Amino Acids

13.53

Weight (kDa)

9.7

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ctr PF04145 54 - 106 3.9e-12 Ctr copper transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016875)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12620
malus_domestica MD04G1140500.v1.1 MD12G1155900.v1.1
prunus_persica Prupe.6G265600_v2.0.a1
pyrus_communis pycom04g12810
rosa_chinensis RchiOBHm_Chr3g0464471
rosa_laevigata RLG00000024694
rosa_multiflora Rmu_sc0003074.1_g000011
rosa_roxburghii Rroxscaffold_6G00415640
rosa_rugosa Rorug03G0072400
rosa_samantha Rh3BG134600 Rh3CG137100 Rh3DG135900
rosa_wichuraiana Rw3G011000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 152, 295
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 199
AjnI CCWGG 3 cut(s) 61, 82, 192
AluBI AGCT 2 cut(s) 140, 228
AluI AGCT 2 cut(s) 140, 228
Alw21I GWGCWC 1 cut(s) 334
AoxI GGCC 5 cut(s) 59, 152, 190, 295, 356
ApaI GGGCCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 356, 357
AsuC2I CCSGG 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 360
BalI TGGCCA 1 cut(s) 297
BanII GRGCYC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 296
BceAI ACGGC 2 cut(s) 236, 272
BciT130I CCWGG 3 cut(s) 63, 84, 194
BcnI CCSGG 1 cut(s) 354
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 120
BglI GCCNNNNNGGC 1 cut(s) 355
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 4 cut(s) 63, 84, 194, 354
BmgT120I GGNCC 2 cut(s) 356, 357
BmiI GGNNCC 2 cut(s) 357, 358
BmrFI CCNGG 4 cut(s) 63, 84, 194, 354
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 2 cut(s) 231, 234
BmuI ACTGGG 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 354
BsaJI CCNNGG 5 cut(s) 82, 132, 288, 321, 353
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 3 cut(s) 63, 84, 194
BseDI CCNNGG 5 cut(s) 82, 132, 288, 321, 353
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 1 cut(s) 296
BseYI CCCAGC 1 cut(s) 167
BshFI GGCC 5 cut(s) 61, 154, 192, 297, 358
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 199
BsnI GGCC 5 cut(s) 61, 154, 192, 297, 358
Bsp120I GGGCCC 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 334, 360
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 5 cut(s) 61, 154, 192, 297, 358
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 357, 358
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 5 cut(s) 82, 132, 288, 321, 353
BssT1I CCWWGG 2 cut(s) 132, 321
Bst2UI CCWGG 3 cut(s) 63, 84, 194
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 190, 249, 295
BstDEI CTNAG 2 cut(s) 54, 198
BstDSI CCRYGG 2 cut(s) 132, 288
BstENI CCTNNNNNAGG 1 cut(s) 197
BstMWI GCNNNNNNNGC 4 cut(s) 137, 194, 290, 355
BstNI CCWGG 3 cut(s) 63, 84, 194
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 4 cut(s) 61, 82, 192, 352
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 305
BsuRI GGCC 5 cut(s) 61, 154, 192, 297, 358
BtgI CCRYGG 2 cut(s) 132, 288
Cac8I GCNNGC 3 cut(s) 190, 249, 295
Cfr13I GGNCC 2 cut(s) 356, 357
Csp6I GTAC 1 cut(s) 91
CviAII CATG 2 cut(s) 88, 133
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 2 cut(s) 54, 198
EaeI YGGCCR 2 cut(s) 152, 295
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 132, 321
Eco147I AGGCCT 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 360
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 61, 82, 192
EcoT14I CCWWGG 2 cut(s) 132, 321
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 2 cut(s) 132, 321
FaeI CATG 2 cut(s) 91, 136
FaiI YATR 7 cut(s) 8, 78, 89, 122, 134, 257, 281
FatI CATG 2 cut(s) 87, 132
Fnu4HI GCNGC 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 327
GluI GCNGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 171
HaeIII GGCC 5 cut(s) 61, 154, 192, 297, 358
HapII CCGG 1 cut(s) 353
Hin1II CATG 2 cut(s) 91, 136
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 1 cut(s) 273
HpaII CCGG 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 194, 290, 355
HpyF3I CTNAG 2 cut(s) 54, 198
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 91, 136
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 2 cut(s) 231, 234
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 37, 233
MboII GAAGA 2 cut(s) 40, 268
MhlI GDGCHC 2 cut(s) 334, 360
MlsI TGGCCA 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 297
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 2 cut(s) 56, 360
Mox20I TGGCCA 1 cut(s) 297
MscI TGGCCA 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 297
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 4 cut(s) 63, 84, 194, 354
MvaI CCWGG 3 cut(s) 63, 84, 194
MwoI GCNNNNNNNGC 4 cut(s) 137, 194, 290, 355
NciI CCSGG 1 cut(s) 354
NcoI CCATGG 1 cut(s) 132
NlaIII CATG 2 cut(s) 91, 136
NlaIV GGNNCC 2 cut(s) 357, 358
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 1 cut(s) 91
PceI AGGCCT 1 cut(s) 192
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp6I CCWGG 3 cut(s) 61, 82, 192
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 3 cut(s) 61, 82, 192
PspN4I GGNNCC 2 cut(s) 357, 358
PspOMI GGGCCC 1 cut(s) 356
PspPI GGNCC 2 cut(s) 356, 357
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SatI GCNGC 1 cut(s) 285
Sau96I GGNCC 2 cut(s) 356, 357
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 4 cut(s) 63, 84, 194, 354
SduI GDGCHC 2 cut(s) 334, 360
SetI ASST 5 cut(s) 39, 96, 142, 230, 367
SfaNI GCATC 2 cut(s) 231, 234
SfcI CTRYAG 1 cut(s) 120
SseBI AGGCCT 1 cut(s) 192
SspMI CTAG 1 cut(s) 327
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 4 cut(s) 61, 82, 192, 352
StyI CCWWGG 2 cut(s) 132, 321
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 39
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 268, 357
TspGWI ACGGA 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 197
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.