Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008973

Physical Location & Seq

Genomic Coordinates Reverse (-)

7689555 .. 7690878

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGGGAAGAAAGCCAGCTGAGTCGTCTTCTTCTTCTTCCTTCACTTCTGAGCTGTTCGGGTCCAAAGACTCGTCCTCCTCCTCTTCATCTGGGATTTTCGGAGCCATTTTCGCTCCTCCCTTGAACTCCCCGAAGGTGCTAAGCAGGGAATCACTGCGTTCTGAGCTCACAAGGAAAAAGTACACTGATCAGCCGTTGCACTTCAACTCAACACAGCCAGGTGATTACTCTAATGGCAAAGCAGTTGAGGGTCAGAGCACACAGATCAAGGACAGTTCACACTATTATGATCAGAGATCGCAACAACCATGTCATCTCAGTTCATCAATCTACTATGGTGGTCAAGACATCTATCATCAGCCCCAGAACAGCCAGGACTCTTATAACTCTACGTACAAGAAAGATGGGACCGACGATGATGGCACTGCTTGCAGAGGAAACTGGTGGCAAGGTAAGAACCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.17

Weight (kDa)

6.9

Isoelectric Point (pI)

67.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02020 AT5G02020
fragaria_vesca	FvH4_6g12720
malus_domestica	MD04G1139000.v1.1 MD12G1154800.v1.1
prunus_persica	Prupe.6G264600_v2.0.a1 Prupe.6G264600_v2.0.a1 Prupe.6G264600_v2.0.a1 Prupe.6G264600_v2.0.a1
pyrus_communis	pycom04g12730 pycom12g14700
rosa_chinensis	RchiOBHm_Chr3g0464641
rosa_laevigata	RLG00000024678
rosa_multiflora	Rmu_sc0002031.1_g000006 Rmu_sc0014550.1_g000014
rosa_roxburghii	Rroxscaffold_6G00415510
rosa_rugosa	Rorug03G0073400.1 Rorug03G0073500
rosa_samantha	Rh3BG135700 Rh3CG138300 Rh3DG137300
rosa_wichuraiana	Rw3G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AfaI	GTAC	2 cut(s)	185, 398
AgeI	ACCGGT	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	127, 208
AjnI	CCWGG	2 cut(s)	220, 375
AluBI	AGCT	3 cut(s)	20, 55, 169
AluI	AGCT	3 cut(s)	20, 55, 169
Alw21I	GWGCWC	2 cut(s)	171, 263
AsiGI	ACCGGT	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	63, 411
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	63, 411
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	171, 263
BccI	CCATC	2 cut(s)	401, 416
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	222, 377
BclI	TGATCA	2 cut(s)	190, 292
BlpI	GCTNAGC	1 cut(s)	143
Bme1390I	CCNGG	2 cut(s)	222, 377
Bme18I	GGWCC	2 cut(s)	63, 411
BmgT120I	GGNCC	2 cut(s)	63, 411
BmiI	GGNNCC	3 cut(s)	64, 106, 412
BmrFI	CCNGG	2 cut(s)	222, 377
BpiI	GAAGAC	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	396
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bse118I	RCCGGY	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	449
BseBI	CCWGG	2 cut(s)	222, 377
BseMII	CTCAG	4 cut(s)	12, 42, 156, 334
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	3 cut(s)	70, 73, 108
BshTI	ACCGGT	1 cut(s)	462
BsiHKAI	GWGCWC	2 cut(s)	171, 263
BsiSI	CCGG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	424
Bsp1286I	GDGCHC	2 cut(s)	171, 263
Bsp143I	GATC	4 cut(s)	190, 267, 292, 299
Bsp1720I	GCTNAGC	1 cut(s)	143
BspCNI	CTCAG	4 cut(s)	13, 43, 157, 333
BspLI	GGNNCC	3 cut(s)	64, 106, 412
BsrFI	RCCGGY	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	462
BssMI	GATC	4 cut(s)	190, 267, 292, 299
Bst2UI	CCWGG	2 cut(s)	222, 377
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	91
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	18, 433
BstDEI	CTNAG	5 cut(s)	21, 51, 143, 165, 320
BstKTI	GATC	4 cut(s)	193, 270, 295, 302
BstMBI	GATC	4 cut(s)	190, 267, 292, 299
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 166, 432
BstNI	CCWGG	2 cut(s)	222, 377
BstSCI	CCNGG	2 cut(s)	220, 375
BstSNI	TACGTA	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	21
BtsI	GCAGTG	2 cut(s)	155, 426
BtsIMutI	CAGTG	3 cut(s)	155, 186, 426
Cac8I	GCNNGC	2 cut(s)	18, 433
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	2 cut(s)	63, 411
Csp6I	GTAC	2 cut(s)	184, 397
CspAI	ACCGGT	1 cut(s)	462
CviAII	CATG	1 cut(s)	312
CviJI	RGCY	9 cut(s)	16, 20, 55, 107, 169, 196, 220, 364, 375
CviKI_1	RGCY	9 cut(s)	16, 20, 55, 107, 169, 196, 220, 364, 375
CviQI	GTAC	2 cut(s)	184, 397
DdeI	CTNAG	5 cut(s)	21, 51, 143, 165, 320
DpnI	GATC	4 cut(s)	192, 269, 294, 301
DpnII	GATC	4 cut(s)	190, 267, 292, 299
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	169
Eco105I	TACGTA	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	63, 411
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	220, 375
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	1 cut(s)	315
FaiI	YATR	4 cut(s)	291, 313, 339, 387
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	1 cut(s)	311
FbaI	TGATCA	2 cut(s)	190, 292
FriOI	GRGCYC	1 cut(s)	171
HapII	CCGG	1 cut(s)	463
Hin1II	CATG	1 cut(s)	315
HinfI	GANTC	4 cut(s)	23, 71, 152, 380
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	186, 281
Hpy188I	TCNGA	5 cut(s)	52, 104, 166, 258, 297
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	2 cut(s)	186, 281
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	52, 130
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	2 cut(s)	202, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 166, 432
HpyF3I	CTNAG	5 cut(s)	21, 51, 143, 165, 320
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	1 cut(s)	315
Ksp22I	TGATCA	2 cut(s)	190, 292
Kzo9I	GATC	4 cut(s)	190, 267, 292, 299
LmnI	GCTCC	2 cut(s)	104, 121
LpnPI	CCDG	9 cut(s)	30, 78, 133, 207, 234, 362, 380, 389, 430
MaeII	ACGT	1 cut(s)	395
MalI	GATC	4 cut(s)	192, 269, 294, 301
MboI	GATC	4 cut(s)	190, 267, 292, 299
MboII	GAAGA	6 cut(s)	21, 21, 24, 27, 30, 78
MhlI	GDGCHC	2 cut(s)	171, 263
MlyI	GAGTC	3 cut(s)	32, 65, 374
MnlI	CCTC	6 cut(s)	88, 91, 94, 129, 244, 431
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	463
MspR9I	CCNGG	2 cut(s)	222, 377
MvaI	CCWGG	2 cut(s)	222, 377
MwoI	GCNNNNNNNGC	3 cut(s)	113, 166, 432
NdeII	GATC	4 cut(s)	190, 267, 292, 299
NlaIII	CATG	1 cut(s)	315
NlaIV	GGNNCC	3 cut(s)	64, 106, 412
PfeI	GAWTC	1 cut(s)	152
PinAI	ACCGGT	1 cut(s)	462
PleI	GAGTC	3 cut(s)	31, 65, 374
PpsI	GAGTC	3 cut(s)	31, 65, 374
Ppu21I	YACGTR	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	220, 375
PspGI	CCWGG	2 cut(s)	220, 375
PspN4I	GGNNCC	3 cut(s)	64, 106, 412
PspPI	GGNCC	2 cut(s)	63, 411
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	2 cut(s)	185, 398
RsaNI	GTAC	2 cut(s)	184, 397
RseI	CAYNNNNRTG	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	190, 267, 292, 299
Sau96I	GGNCC	2 cut(s)	63, 411
SchI	GAGTC	3 cut(s)	32, 65, 374
ScrFI	CCNGG	2 cut(s)	222, 377
SduI	GDGCHC	2 cut(s)	171, 263
SetI	ASST	7 cut(s)	22, 57, 141, 171, 226, 398, 457
SinI	GGWCC	2 cut(s)	63, 411
SmiMI	CAYNNNNRTG	1 cut(s)	288
SnaBI	TACGTA	1 cut(s)	396
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	220, 375
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	398
TaqII	GACCGA	1 cut(s)	428
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	152
TscAI	CASTG	3 cut(s)	162, 193, 433
TspDTI	ATGAA	2 cut(s)	78, 315
TspRI	CASTG	3 cut(s)	162, 193, 433
VpaK11BI	GGWCC	2 cut(s)	63, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.