RLG00000024678

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008973
Physical Location & Seq
Forward (+)
38150289 .. 38152193
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024678

Sequence Viewer

Length: 420 bp
ATGGAGGGAAGAAAGCCAGCCGGGTCGTCGTCTTCTTCCTCCACTTCTGAGCTTCTTGGGTCCAAAGACTCATCCTCCTCTTCATCTGGGATTTTCGGGGCCATTTTCGCGCCTCCCTTGAACTCTCCAAAGGTGCTAGGCAGGGAAGCTCTGCGTTCTGAACTCACTAGGAAAAAGATCACTGATCAGCCGTTGAACTTCCACTCGGCAGAGCCAGGTACTTACTATAGTGGCAAAGAAGTTCATCAATCTATTATGGTGGGCAAGACATCTATAATTATCCCCAGAATAGCCAGAACACTGGAATTAACTCTACGTTCAAGAAAGATGGGACTGACGACGATGGTACTGCTTGCAGAGGAAACTGGTGGCAAGGGTCTCTCTATTATTGAGTCTCTTGCCATCCTCATCCAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.76

Weight (kDa)

9.75

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 110
AfaI GTAC 2 cut(s) 220, 348
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 3 cut(s) 121, 196, 321
AjnI CCWGG 2 cut(s) 214, 411
AluBI AGCT 2 cut(s) 52, 149
AluI AGCT 2 cut(s) 52, 149
Alw26I GTCTC 2 cut(s) 383, 399
AoxI GGCC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 60, 99
AsuC2I CCSGG 1 cut(s) 22
AvaII GGWCC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 24
BccI CCATC 3 cut(s) 322, 337, 410
BceAI ACGGC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 2 cut(s) 216, 413
BclI TGATCA 1 cut(s) 184
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 383, 399
BfaI CTAG 2 cut(s) 137, 168
BfmI CTRYAG 1 cut(s) 226
Bme1390I CCNGG 3 cut(s) 22, 216, 413
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 60, 99
BmiI GGNNCC 2 cut(s) 61, 100
BmrFI CCNGG 3 cut(s) 22, 216, 413
BpiI GAAGAC 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 2 cut(s) 306, 370
BseBI CCWGG 2 cut(s) 216, 413
BseGI GGATG 3 cut(s) 71, 402, 408
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 306, 370
BseRI GAGGAG 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 383, 399
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 383
Bsp143I GATC 2 cut(s) 177, 184
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 61, 100
BspTNI GGTCTC 1 cut(s) 383
BsrI ACTGG 2 cut(s) 306, 370
BssMI GATC 2 cut(s) 177, 184
Bst2UI CCWGG 2 cut(s) 216, 413
Bst6I CTCTTC 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 18, 354
BstDEI CTNAG 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 3 cut(s) 71, 402, 408
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 2 cut(s) 180, 187
BstMAI GTCTC 2 cut(s) 383, 399
BstMBI GATC 2 cut(s) 177, 184
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 2 cut(s) 216, 413
BstSCI CCNGG 3 cut(s) 20, 214, 411
BstSFI CTRYAG 1 cut(s) 226
BstUI CGCG 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 3 cut(s) 71, 402, 408
BtsIMutI CAGTG 2 cut(s) 180, 299
Cac8I GCNNGC 2 cut(s) 18, 354
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 60, 99
Csp6I GTAC 2 cut(s) 219, 347
CviJI RGCY 8 cut(s) 16, 20, 52, 101, 149, 190, 214, 293
CviKI_1 RGCY 8 cut(s) 16, 20, 52, 101, 149, 190, 214, 293
CviQI GTAC 2 cut(s) 219, 347
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 179, 186
DpnII GATC 2 cut(s) 177, 184
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 214, 411
FaiI YATR 4 cut(s) 228, 257, 275, 418
FaqI GGGAC 1 cut(s) 345
FbaI TGATCA 1 cut(s) 184
FokI GGATG 3 cut(s) 58, 389, 395
FspBI CTAG 2 cut(s) 137, 168
GlaI GCGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 21
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 2 cut(s) 68, 392
HpaII CCGG 1 cut(s) 21
Hpy188I TCNGA 2 cut(s) 49, 160
Hpy188III TCNNGA 1 cut(s) 321
Hpy99I CGWCG 2 cut(s) 31, 343
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 316
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 177, 184
MaeI CTAG 2 cut(s) 137, 168
MaeII ACGT 1 cut(s) 316
MalI GATC 2 cut(s) 179, 186
MboI GATC 2 cut(s) 177, 184
MboII GAAGA 4 cut(s) 21, 24, 27, 72
MluCI AATT 2 cut(s) 276, 305
MlyI GAGTC 2 cut(s) 62, 401
MnlI CCTC 6 cut(s) 49, 85, 88, 123, 352, 416
MseI TTAA 1 cut(s) 308
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 3 cut(s) 22, 216, 413
MvaI CCWGG 2 cut(s) 216, 413
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 1 cut(s) 22
NdeII GATC 2 cut(s) 177, 184
NlaIV GGNNCC 2 cut(s) 61, 100
NmeAIII GCCGAG 1 cut(s) 185
PleI GAGTC 2 cut(s) 62, 400
PpsI GAGTC 2 cut(s) 62, 400
Psp6I CCWGG 2 cut(s) 214, 411
PspGI CCWGG 2 cut(s) 214, 411
PspN4I GGNNCC 2 cut(s) 61, 100
PspPI GGNCC 2 cut(s) 60, 99
RsaI GTAC 2 cut(s) 220, 348
RsaNI GTAC 2 cut(s) 219, 347
SaqAI TTAA 1 cut(s) 308
Sau3AI GATC 2 cut(s) 177, 184
Sau96I GGNCC 2 cut(s) 60, 99
SchI GAGTC 2 cut(s) 62, 401
ScrFI CCNGG 3 cut(s) 22, 216, 413
SetI ASST 5 cut(s) 54, 135, 151, 220, 319
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 1 cut(s) 60
Sse9I AATT 2 cut(s) 276, 305
SspMI CTAG 2 cut(s) 137, 168
StyD4I CCNGG 3 cut(s) 20, 214, 411
TaiI ACGT 1 cut(s) 319
TasI AATT 2 cut(s) 276, 305
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 2 cut(s) 187, 306
TspDTI ATGAA 2 cut(s) 72, 233
TspRI CASTG 2 cut(s) 187, 306
VpaK11BI GGWCC 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 410
XspI CTAG 2 cut(s) 137, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.