Prupe.6G264600_v2.0.a1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008973
Physical Location & Seq
Forward (+)
25370103 .. 25373659
3557 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G264600.1

Sequence Viewer

Length: 510 bp
ATGGAGGGGAGAAAGCAAGTTGGGTCGTCTTCTTCGTTTACTTCTGAGCTTTTCGGGTCCAAGGAGTCGTCATCCTCATCTGGGATTTTCGGGGCTATATTTGCGCCTTCCTCCAAGGAACTGGTGTTAGGGAGGGAATCTCTGCGTTCTGAAGTCACTGGGAAAAAGCTTACGGATGAACCATTGCACGTCAAACCTGGAGAGCCAGTTGGTGACTCTAATGGCAGCGAAGGTGAGAGTCAGAACATGCCAAATAAGGACATGAGTTCCTTCTATCAGGATCAGAGAGTACAGCAACCATGTCACCTCAGCTCTTCAATCTATTATGGTGGCCAAGATATTTATTCTTACCCCCAGAGTACCCAGAGCCCTGGATTTAACTCTGTGGTGAGAATTTTTGTTTGTTTTGCTTTTTGTTTTTTCCTCCTTAACAATTGTTGGTTTTACCATCTGACTCTGCGAATAAGATTCTTTAAAAATTTCCCCGGGAATAATGCAAACACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.77

Weight (kDa)

6.82

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 288
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 2 cut(s) 393, 478
AcuI CTGAAG 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 507
AfaI GTAC 2 cut(s) 291, 361
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 318
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 2 cut(s) 196, 370
AluBI AGCT 3 cut(s) 49, 169, 312
AluI AGCT 3 cut(s) 49, 169, 312
AlwI GGATC 1 cut(s) 288
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 2 cut(s) 393, 478
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 2 cut(s) 486, 487
AsuHPI GGTGA 4 cut(s) 224, 245, 296, 400
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 333
BanII GRGCYC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 21
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 456
BciT130I CCWGG 2 cut(s) 198, 372
BcnI CCSGG 2 cut(s) 486, 487
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 4 cut(s) 198, 372, 486, 487
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 1 cut(s) 485
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 4 cut(s) 198, 372, 486, 487
BmrI ACTGGG 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 124, 156
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 486, 487
BsaJI CCNNGG 5 cut(s) 60, 114, 370, 484, 485
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 3 cut(s) 126, 163, 206
Bse3DI GCAATG 1 cut(s) 182
BseBI CCWGG 2 cut(s) 198, 372
BseDI CCNNGG 5 cut(s) 60, 114, 370, 484, 485
BseGI GGATG 2 cut(s) 71, 181
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 2 cut(s) 36, 322
BseNI ACTGG 3 cut(s) 126, 163, 206
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 1 cut(s) 486
BslI CCNNNNNNNGG 1 cut(s) 81
BsnI GGCC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 1 cut(s) 280
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 2 cut(s) 37, 321
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 288
BspQI GCTCTTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 182
BsrI ACTGG 3 cut(s) 126, 163, 206
BssECI CCNNGG 5 cut(s) 60, 114, 370, 484, 485
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 2 cut(s) 60, 114
Bst2UI CCWGG 2 cut(s) 198, 372
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 319
BstDEI CTNAG 2 cut(s) 45, 308
BstF5I GGATG 2 cut(s) 71, 181
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 2 cut(s) 198, 372
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 4 cut(s) 196, 370, 484, 485
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 21
BstXI CCANNNNNNTGG 2 cut(s) 121, 371
BsuRI GGCC 1 cut(s) 333
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 71, 181
BtsIMutI CAGTG 2 cut(s) 156, 501
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 57
Cfr9I CCCGGG 1 cut(s) 485
Csp6I GTAC 2 cut(s) 290, 360
CviAII CATG 3 cut(s) 247, 262, 300
CviJI RGCY 7 cut(s) 49, 95, 169, 205, 312, 333, 369
CviKI_1 RGCY 7 cut(s) 49, 95, 169, 205, 312, 333, 369
CviQI GTAC 2 cut(s) 290, 360
DdeI CTNAG 2 cut(s) 45, 308
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DraI TTTAAA 1 cut(s) 475
DraIII CACNNNGTG 1 cut(s) 507
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 60, 114
Eco24I GRGCYC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 485
EcoRII CCWGG 2 cut(s) 196, 370
EcoT14I CCWWGG 2 cut(s) 60, 114
EcoT38I GRGCYC 1 cut(s) 371
ErhI CCWWGG 2 cut(s) 60, 114
FaeI CATG 3 cut(s) 250, 265, 303
FaiI YATR 5 cut(s) 98, 248, 263, 301, 327
FatI CATG 3 cut(s) 246, 261, 299
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 2 cut(s) 58, 188
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 1 cut(s) 226
GlaI GCGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 486
HhaI GCGC 1 cut(s) 106
Hin1II CATG 3 cut(s) 250, 265, 303
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 6 cut(s) 65, 137, 215, 238, 454, 468
HpaII CCGG 1 cut(s) 486
HphI GGTGA 4 cut(s) 224, 245, 296, 400
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 5 cut(s) 46, 151, 243, 285, 453
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 3 cut(s) 117, 224, 280
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 187, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 45, 308
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 3 cut(s) 250, 265, 303
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 237
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 3 cut(s) 154, 212, 302
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 3 cut(s) 21, 24, 306
MfeI CAATTG 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 371
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 3 cut(s) 393, 433, 478
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 4 cut(s) 74, 209, 247, 448
MnlI CCTC 5 cut(s) 85, 121, 126, 317, 434
Mox20I TGGCCA 1 cut(s) 333
MscI TGGCCA 1 cut(s) 333
MseI TTAA 3 cut(s) 378, 429, 474
Msp20I TGGCCA 1 cut(s) 333
MspI CCGG 1 cut(s) 486
MspR9I CCNGG 4 cut(s) 198, 372, 486, 487
MunI CAATTG 1 cut(s) 433
MvaI CCWGG 2 cut(s) 198, 372
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 2 cut(s) 486, 487
NdeII GATC 1 cut(s) 280
NlaIII CATG 3 cut(s) 250, 265, 303
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 3 cut(s) 154, 212, 302
NspI RCATGY 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 2 cut(s) 137, 468
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 4 cut(s) 73, 209, 246, 448
PpsI GAGTC 4 cut(s) 73, 209, 246, 448
Psp6I CCWGG 2 cut(s) 196, 370
PspGI CCWGG 2 cut(s) 196, 370
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 57
RsaI GTAC 2 cut(s) 291, 361
RsaNI GTAC 2 cut(s) 290, 360
SapI GCTCTTC 1 cut(s) 319
SaqAI TTAA 3 cut(s) 378, 429, 474
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 4 cut(s) 74, 209, 247, 448
ScrFI CCNGG 4 cut(s) 198, 372, 486, 487
SduI GDGCHC 1 cut(s) 371
SetI ASST 7 cut(s) 51, 171, 192, 199, 235, 309, 314
SinI GGWCC 1 cut(s) 57
SmaI CCCGGG 1 cut(s) 487
Sse9I AATT 3 cut(s) 393, 433, 478
StyD4I CCNGG 4 cut(s) 196, 370, 484, 485
StyI CCWWGG 2 cut(s) 60, 114
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 192
TasI AATT 3 cut(s) 393, 433, 478
TatI WGTACW 1 cut(s) 289
TfiI GAWTC 2 cut(s) 137, 468
Tru1I TTAA 3 cut(s) 378, 429, 474
Tru9I TTAA 3 cut(s) 378, 429, 474
TscAI CASTG 2 cut(s) 163, 508
TseFI GTSAC 3 cut(s) 154, 212, 302
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 3 cut(s) 154, 212, 302
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 188
TspMI CCCGGG 1 cut(s) 485
TspRI CASTG 2 cut(s) 163, 508
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 2 cut(s) 393, 478
XceI RCATGY 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.