Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008973

Physical Location & Seq

Genomic Coordinates Forward (+)

37678306 .. 37680181

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAGGGAATAAAGCCAGCCGGGTCTTCATCTTCTTCCTCCACTTCTGAGCTGCTTGGGTCCAAAGACTCATCCTCCTCTTCATCTGGGATTTTTGGGGCCATTTTCGCGCCTCCCTTGAACTCCCCAAAGGTGCTAAGCAGGGAATCTCTGCGTTCTGAACTCACTAGGAAAAAGATCACTGATCAACCGTTGAACTTCCACTCGGCAGAGCCAGGTACTTACTATAGTGGCAAAGAAGGCGAGGGTCAGAGCACACGGAAAGAGGACATGAGTTCCTACTATGAGGATCAGAGAGTGCAATCACCATGTCATCTCAGTTCATCAATCTATTATGGTGGGCAAGACATCTATAATTATCCCCAGAATAGCCAGAACACTGGAATTAACTCTGCGTTCAAGAAAGATGGGACTGACGACGATGGCACTGCTTGCAGAGGAAACTGGTGGCAAGGTAAGAAACTGAAATTGTTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.32

Weight (kDa)

6.73

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02020 AT5G02020
fragaria_vesca	FvH4_6g12720
malus_domestica	MD04G1139000.v1.1 MD12G1154800.v1.1
prunus_persica	Prupe.6G264600_v2.0.a1 Prupe.6G264600_v2.0.a1 Prupe.6G264600_v2.0.a1 Prupe.6G264600_v2.0.a1
pyrus_communis	pycom04g12730 pycom12g14700
rosa_chinensis	RchiOBHm_Chr3g0464641
rosa_laevigata	RLG00000024678
rosa_multiflora	Rmu_sc0002031.1_g000006 Rmu_sc0014550.1_g000014
rosa_roxburghii	Rroxscaffold_6G00415510
rosa_rugosa	Rorug03G0073400.1 Rorug03G0073500
rosa_samantha	Rh3BG135700 Rh3CG138300 Rh3DG137300
rosa_wichuraiana	Rw3G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	110
AclWI	GGATC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	121, 196, 400
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	60, 99
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	2 cut(s)	401, 416
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	22
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	22, 216
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	60, 99
BmiI	GGNNCC	2 cut(s)	61, 100
BmrFI	CCNGG	2 cut(s)	22, 216
BpiI	GAAGAC	1 cut(s)	18
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse1I	ACTGG	2 cut(s)	385, 449
BseBI	CCWGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	71
BseMII	CTCAG	2 cut(s)	39, 331
BseNI	ACTGG	2 cut(s)	385, 449
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	3 cut(s)	177, 184, 289
Bsp1720I	GCTNAGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	40, 330
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	61, 100
BspPI	GGATC	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	385, 449
BssMI	GATC	3 cut(s)	177, 184, 289
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	18, 433
BstDEI	CTNAG	3 cut(s)	48, 137, 317
BstF5I	GGATG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	180, 187, 292
BstMBI	GATC	3 cut(s)	177, 184, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 240, 432
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	20, 214
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	180, 378, 426
Cac8I	GCNNGC	2 cut(s)	18, 433
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	60, 99
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	271, 309
CviJI	RGCY	6 cut(s)	16, 20, 52, 101, 214, 372
CviKI_1	RGCY	6 cut(s)	16, 20, 52, 101, 214, 372
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	3 cut(s)	48, 137, 317
DpnI	GATC	3 cut(s)	179, 186, 291
DpnII	GATC	3 cut(s)	177, 184, 289
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	2 cut(s)	274, 312
FaiI	YATR	6 cut(s)	228, 272, 285, 310, 336, 354
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	2 cut(s)	270, 308
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	274, 312
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	68, 146
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	297
Hpy188I	TCNGA	4 cut(s)	49, 160, 252, 294
Hpy188III	TCNNGA	1 cut(s)	400
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	301, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 240, 432
HpyF3I	CTNAG	3 cut(s)	48, 137, 317
Hsp92II	CATG	2 cut(s)	274, 312
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	177, 184, 289
Lsp1109I	GCAGC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	168
MalI	GATC	3 cut(s)	179, 186, 291
MboI	GATC	3 cut(s)	177, 184, 289
MboII	GAAGA	4 cut(s)	18, 24, 27, 72
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	3 cut(s)	355, 384, 467
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	8 cut(s)	49, 85, 88, 123, 238, 259, 280, 431
MseI	TTAA	1 cut(s)	387
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	22, 216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	107, 240, 432
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	3 cut(s)	177, 184, 289
NlaIII	CATG	2 cut(s)	274, 312
NlaIV	GGNNCC	2 cut(s)	61, 100
NmeAIII	GCCGAG	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	61, 100
PspPI	GGNCC	2 cut(s)	60, 99
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	3 cut(s)	177, 184, 289
Sau96I	GGNCC	2 cut(s)	60, 99
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	22, 216
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	4 cut(s)	54, 135, 220, 457
SfcI	CTRYAG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	3 cut(s)	355, 384, 467
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	20, 214
TaaI	ACNGT	1 cut(s)	192
TasI	AATT	3 cut(s)	355, 384, 467
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	187, 385, 433
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	3 cut(s)	18, 72, 312
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	3 cut(s)	187, 385, 433
VpaK11BI	GGWCC	1 cut(s)	60
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.