FvH4_6g14870

Dirigent protein 17-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010578
Physical Location & Seq
Reverse (-)
9217461 .. 9219542
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14870.t2

Sequence Viewer

Length: 624 bp
ATGGAGAACAACAGTAAAGAACAGGAGGAAAACGGTTGCAAAGAACAGGAGGATAACACCAACAAAGAGCAGGTAGTAGAGCTGTCACCATCATCATCAGCATCGGTTTATGAAATACCAGGGGAGCCTGCTGTTGTCATTGATGGAATTCTTGTGGTTCCCCCAAGTAATGGCTCTCTTGTACTCTCTGAGGCCGTGAACGATGCAGCATCACTCGGAAATACAAGATTTGGTTTATGGTTGGTTGGAAGGGAAGTACGAAAGTTGTTTGGTGAACAATATTACTCTGGTACAGTGACCGAGTTTGATGAAGAATCAGGCTGGTGGAGGGTTGTGTATGAAGATGGCGACCTTGAAGATCTCGAGTGGAATGAGCTGGAACAGGTGCTTCAGCCCTTGGATATTATGGTCCCATTGAAATCGTTAGCCCTGAAGACTCTCAAGAAAATGAAGAAGCCTGTCCAGAAATCCAAGGGTGCTACAGCTCGACCTCTAAAACAGAAATCCAAACGCTCGGCAACTAGTGGAAAGAAAGTCTCAGTGGCTGAAGATGTTCCAATGATGACTCCAGAGGTGAAACAGGCTGGAGAAGGTGCGAAACAGTCTGCTAAAAAAAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook LBR_tudor

Protein Analysis

208

Amino Acids

22.81

Weight (kDa)

5.11

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 83 - 130 1e-24 PTM/DIR17-like, Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 170
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 3 cut(s) 374, 452, 567
AfaI GTAC 3 cut(s) 183, 258, 292
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 2 cut(s) 356, 418
AhlI ACTAGT 1 cut(s) 521
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 82, 376, 485
AluI AGCT 3 cut(s) 82, 376, 485
Alw26I GTCTC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 3 cut(s) 78, 284, 586
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 218
BccI CCATC 3 cut(s) 97, 137, 338
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 541
BcuI ACTAGT 1 cut(s) 521
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 480
BfuAI ACCTGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 358
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 3 cut(s) 126, 159, 411
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 3 cut(s) 110, 193, 218
BpiI GAAGAC 1 cut(s) 440
BpmI CTGGAG 2 cut(s) 552, 606
BpuEI CTTGAG 1 cut(s) 425
BsaJI CCNNGG 3 cut(s) 119, 396, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 119, 396, 471
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 180, 552
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 1 cut(s) 358
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 181, 551
BspLI GGNNCC 3 cut(s) 126, 159, 411
BspMI ACCTGC 1 cut(s) 61
BssECI CCNNGG 3 cut(s) 119, 396, 471
BssMI GATC 1 cut(s) 358
BssT1I CCWWGG 2 cut(s) 396, 471
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 4 cut(s) 14, 35, 295, 603
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 189, 538
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 300, 546
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 545
Cfr13I GGNCC 1 cut(s) 409
Csp6I GTAC 3 cut(s) 182, 257, 291
CviQI GTAC 3 cut(s) 182, 257, 291
DdeI CTNAG 2 cut(s) 189, 538
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 396, 471
Eco47I GGWCC 1 cut(s) 409
Eco57I CTGAAG 3 cut(s) 374, 452, 567
Eco88I CYCGRG 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 396, 471
ErhI CCWWGG 2 cut(s) 396, 471
FaiI YATR 4 cut(s) 111, 238, 339, 407
FaqI GGGAC 1 cut(s) 395
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 522
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 2 cut(s) 552, 606
HaeIII GGCC 1 cut(s) 194
HinfI GANTC 3 cut(s) 314, 436, 565
HphI GGTGA 3 cut(s) 78, 284, 586
Hpy166II GTNNAC 2 cut(s) 199, 275
Hpy188I TCNGA 2 cut(s) 190, 218
Hpy188III TCNNGA 4 cut(s) 362, 442, 463, 569
Hpy8I GTNNAC 2 cut(s) 199, 275
HpyAV CCTTC 2 cut(s) 243, 584
HpyCH4III ACNGT 4 cut(s) 14, 35, 295, 603
HpyCH4V TGCA 2 cut(s) 39, 206
HpyF3I CTNAG 2 cut(s) 189, 538
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 3 cut(s) 110, 193, 218
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 2 cut(s) 84, 295
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 6 cut(s) 323, 353, 368, 445, 463, 560
MflI RGATCY 1 cut(s) 358
MluCI AATT 1 cut(s) 147
MlyI GAGTC 2 cut(s) 430, 559
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 6 cut(s) 19, 43, 184, 321, 501, 565
MroXI GAANNNNTTC 1 cut(s) 552
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
NdeII GATC 1 cut(s) 358
NlaIV GGNNCC 3 cut(s) 126, 159, 411
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 2 cut(s) 84, 295
PaeR7I CTCGAG 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 2 cut(s) 430, 559
PpsI GAGTC 2 cut(s) 430, 559
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 126, 159, 411
PspPI GGNCC 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 3 cut(s) 183, 258, 292
RsaNI GTAC 3 cut(s) 182, 257, 291
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 2 cut(s) 430, 559
ScrFI CCNGG 1 cut(s) 120
SetI ASST 9 cut(s) 75, 84, 354, 378, 387, 487, 493, 576, 595
SfaNI GCATC 3 cut(s) 110, 193, 218
SfcI CTRYAG 1 cut(s) 480
Sfr274I CTCGAG 1 cut(s) 362
SinI GGWCC 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 362, 440
SmoI CTYRAG 2 cut(s) 362, 440
SpeI ACTAGT 1 cut(s) 521
Sse9I AATT 1 cut(s) 147
SspI AATATT 1 cut(s) 281
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 2 cut(s) 396, 471
TaaI ACNGT 4 cut(s) 14, 35, 295, 603
TaqI TCGA 2 cut(s) 363, 487
TaqII GACCGA 1 cut(s) 314
TasI AATT 1 cut(s) 147
TatI WGTACW 1 cut(s) 181
TfiI GAWTC 1 cut(s) 314
TscAI CASTG 2 cut(s) 300, 546
TseFI GTSAC 2 cut(s) 84, 295
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 2 cut(s) 84, 295
TspDTI ATGAA 4 cut(s) 126, 324, 354, 464
TspRI CASTG 2 cut(s) 300, 546
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 147
XhoI CTCGAG 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.