Rh3CG162200

Dirigent protein 17-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0010578
Physical Location & Seq
Reverse (-)
13659781 .. 13660257
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG162200.1

Sequence Viewer

Length: 477 bp
ATGCTTGTGGTTCCCCCAAGTAATGGCTCTTTTGTACTCTCTGATGCCGTGAATGATGCAGCATCCCTTGGAAATACAAGATTTGGTGTATGGTTGGTTGGAAGGGAAGTACGAAAGTTGTTTGGTGAGCAATACTACTCCGGTACAGTGACTGAGTTTGATGAAGAATCAGGCTGGTGGAGGGTTGTGTATGAAGATGGTGACCTTGAAGATCTTGAGTGGAATGAGCTGGAAGAGGTGCTTCAGCCCTTGGATATCATGGTACCACTGAAATCGTTAGCCCTGAAGACTCTCAAGAAAACCAAGAAGCCTGTCCAGAAATCCAAGAGTGCTGCGGCTCAACCTCAAAAACAGAAATCCAAACGCTCGGGAAGTTATGCAAAGAAGGTCTCAGTGCCTGAAGATGTTCCAATGATGACTCCCGAGGCAAAACAGTCCGGTAAATGTGCGAAACAGTCTGCTAAAAAAGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook LBR_tudor

Protein Analysis

158

Amino Acids

17.59

Weight (kDa)

8.85

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 34 - 81 7e-25 PTM/DIR17-like, Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 262
AccB7I CCANNNNNTGG 1 cut(s) 23
AciI CCGC 1 cut(s) 335
AcuI CTGAAG 3 cut(s) 227, 305, 420
AfaI GTAC 4 cut(s) 36, 111, 145, 264
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 394
AlwNI CAGNNNCTG 2 cut(s) 152, 398
Ama87I CYCGRG 2 cut(s) 367, 422
ApeKI GCWGC 2 cut(s) 59, 332
Asp700I GAANNNNTTC 1 cut(s) 405
Asp718I GGTACC 1 cut(s) 262
AsuHPI GGTGA 2 cut(s) 137, 212
AvaI CYCGRG 2 cut(s) 367, 422
BanI GGYRCC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 71, 319
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 394
BglII AGATCT 1 cut(s) 211
BisI GCNGC 3 cut(s) 60, 333, 336
BlsI GCNGC 3 cut(s) 61, 334, 337
BmeT110I CYCGRG 2 cut(s) 367, 422
BmiI GGNNCC 2 cut(s) 12, 264
BmsI GCATC 3 cut(s) 34, 46, 71
BpiI GAAGAC 1 cut(s) 293
BpuEI CTTGAG 2 cut(s) 236, 278
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 67, 249, 423
BsaWI WCCGGW 2 cut(s) 140, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseDI CCNNGG 3 cut(s) 67, 249, 423
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 2 cut(s) 144, 405
BseXI GCAGC 2 cut(s) 71, 319
BshNI GGYRCC 1 cut(s) 262
BsiHKCI CYCGRG 2 cut(s) 367, 422
BsiSI CCGG 2 cut(s) 141, 438
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 394
Bso31I GGTCTC 1 cut(s) 394
BsoBI CYCGRG 2 cut(s) 367, 422
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 335
BspCNI CTCAG 2 cut(s) 145, 404
BspLI GGNNCC 2 cut(s) 12, 264
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 394
BssECI CCNNGG 3 cut(s) 67, 249, 423
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 2 cut(s) 67, 249
Bst4CI ACNGT 3 cut(s) 148, 435, 456
Bst6I CTCTTC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 153, 391
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 1 cut(s) 211
BstPI GGTNACC 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 71, 319
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BtsCI GGATG 1 cut(s) 62
BtsIMutI CAGTG 3 cut(s) 153, 266, 399
CaiI CAGNNNCTG 2 cut(s) 152, 398
Csp6I GTAC 4 cut(s) 35, 110, 144, 263
CviAII CATG 1 cut(s) 259
CviJI RGCY 7 cut(s) 27, 174, 229, 247, 281, 310, 338
CviKI_1 RGCY 7 cut(s) 27, 174, 229, 247, 281, 310, 338
CviQI GTAC 4 cut(s) 35, 110, 144, 263
DdeI CTNAG 2 cut(s) 153, 391
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 2 cut(s) 67, 249
Eco31I GGTCTC 1 cut(s) 394
Eco32I GATATC 1 cut(s) 256
Eco57I CTGAAG 3 cut(s) 227, 305, 420
Eco88I CYCGRG 2 cut(s) 367, 422
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 67, 249
ErhI CCWWGG 2 cut(s) 67, 249
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 91, 192, 260, 378
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 3 cut(s) 60, 333, 336
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 60, 333, 336
GluI GCNGC 3 cut(s) 60, 333, 336
HapII CCGG 2 cut(s) 141, 438
Hin1II CATG 1 cut(s) 262
HinfI GANTC 3 cut(s) 167, 289, 418
HpaII CCGG 2 cut(s) 141, 438
HphI GGTGA 2 cut(s) 137, 212
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 5 cut(s) 215, 295, 316, 369, 422
HpyAV CCTTC 2 cut(s) 96, 379
HpyCH4III ACNGT 3 cut(s) 148, 435, 456
HpyCH4V TGCA 2 cut(s) 59, 380
HpyF3I CTNAG 2 cut(s) 153, 391
Hsp92II CATG 1 cut(s) 262
KpnI GGTACC 1 cut(s) 266
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 9 cut(s) 154, 156, 160, 215, 296, 324, 329, 411, 451
Lsp1109I GCAGC 2 cut(s) 71, 319
LweI GCATC 3 cut(s) 34, 46, 71
MaeIII GTNAC 2 cut(s) 148, 200
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 6 cut(s) 176, 206, 221, 245, 298, 413
MflI RGATCY 1 cut(s) 211
MlyI GAGTC 2 cut(s) 283, 412
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 174, 229, 354, 418
MroXI GAANNNNTTC 1 cut(s) 405
MspI CCGG 2 cut(s) 141, 438
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 12, 264
NmuCI GTSAC 2 cut(s) 148, 200
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 23
PkrI GCNGC 3 cut(s) 61, 334, 337
PleI GAGTC 2 cut(s) 283, 412
PpsI GAGTC 2 cut(s) 283, 412
PspEI GGTNACC 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 12, 264
PstNI CAGNNNCTG 2 cut(s) 152, 398
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 4 cut(s) 36, 111, 145, 264
RsaNI GTAC 4 cut(s) 35, 110, 144, 263
SatI GCNGC 3 cut(s) 60, 333, 336
Sau3AI GATC 1 cut(s) 211
SchI GAGTC 2 cut(s) 283, 412
SetI ASST 5 cut(s) 207, 231, 240, 346, 390
SfaNI GCATC 3 cut(s) 34, 46, 71
SmlI CTYRAG 2 cut(s) 215, 293
SmoI CTYRAG 2 cut(s) 215, 293
SsiI CCGC 1 cut(s) 335
StyI CCWWGG 2 cut(s) 67, 249
TaaI ACNGT 3 cut(s) 148, 435, 456
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 1 cut(s) 167
TscAI CASTG 3 cut(s) 153, 273, 399
TseFI GTSAC 2 cut(s) 148, 200
TseI GCWGC 2 cut(s) 59, 332
Tsp45I GTSAC 2 cut(s) 148, 200
TspDTI ATGAA 2 cut(s) 177, 207
TspRI CASTG 3 cut(s) 153, 273, 399
Van91I CCANNNNNTGG 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.