RchiOBHm_Chr3g0468081

Dirigent protein 17-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010578
Physical Location & Seq
Reverse (-)
14179452 .. 14181682
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43400

Sequence Viewer

Length: 624 bp
ATGGAAAACAACAGTAAAGAGCAGGAGGAAAACGGCTGCAAAGAGCAGGAGGAAAACACCAACAAAGTGCAGGAAGTAGAGCCATCATCATCATCAACAGCATCGGTTTATGAAATACCAGGGGAGCCGGCTGTTGTCATTGATGGAATGCTTGTGGTTCCCCCAAGTAATGGCTCTTTTGTACTCTCTGATGCCATGAATGATGCAGCATCCCTTGGAAATACAAGATTTGGTGTATGGTTGGTTGGAAGGGAAGTACGAAAGTTGTTCGGTGAGCAATACTACTCCGGTACAGTGACTGAGTTTGATGAAGAATCAGGCTGGTGGAGGGTTGTGTATGAAGATGGTGACCTTGAAGATCTTGAGTGGAATGAGCTGGAAGAGGTGCTTCAGCCCTTGGATATCATGGTACCACTGAAATCGTTAGCCCTGAAGACTCTCAAGAAAACCAAGAAGCCTGTGCAGAAATCCAAGAGTGCTGCGGCTCAACCTCAAAAACAGAAATCCAAACGCTCGGGAAGTTATGCAAAGAAGGTCTCAGTGCCTGAAGATGTTCCAATGATGACTCCTGAGGCAAAACAGTCCGGTAAATGTGTGAAACAGTCTGCTAAAAAAGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook LBR_tudor

Protein Analysis

207

Amino Acids

22.98

Weight (kDa)

5.03

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 83 - 130 1.2e-24 PTM/DIR17-like, Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 409
AccB7I CCANNNNNTGG 1 cut(s) 170
AciI CCGC 1 cut(s) 482
AcuI CTGAAG 3 cut(s) 374, 452, 567
AfaI GTAC 4 cut(s) 183, 258, 292, 411
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 541
AlwNI CAGNNNCTG 2 cut(s) 299, 545
Ama87I CYCGRG 1 cut(s) 514
ApeKI GCWGC 3 cut(s) 36, 206, 479
Asp700I GAANNNNTTC 1 cut(s) 552
Asp718I GGTACC 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 284, 359
AvaI CYCGRG 1 cut(s) 514
AxyI CCTNAGG 1 cut(s) 570
BanI GGYRCC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 3 cut(s) 23, 218, 466
BccI CCATC 3 cut(s) 91, 137, 338
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 541
BglII AGATCT 1 cut(s) 358
BisI GCNGC 4 cut(s) 37, 207, 480, 483
BlsI GCNGC 4 cut(s) 38, 208, 481, 484
Bme1390I CCNGG 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 514
BmiI GGNNCC 3 cut(s) 126, 159, 411
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 4 cut(s) 110, 181, 193, 218
BpiI GAAGAC 1 cut(s) 440
BpuEI CTTGAG 2 cut(s) 383, 425
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 3 cut(s) 119, 214, 396
BsaWI WCCGGW 2 cut(s) 287, 584
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 127
Bse21I CCTNAGG 1 cut(s) 570
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 119, 214, 396
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 3 cut(s) 291, 552, 561
BseXI GCAGC 3 cut(s) 23, 218, 466
BsgI GTGCAG 2 cut(s) 89, 482
BshNI GGYRCC 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 3 cut(s) 128, 288, 585
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 541
BsmI GAATGC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 541
BsoBI CYCGRG 1 cut(s) 514
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 1 cut(s) 482
BspCNI CTCAG 3 cut(s) 292, 551, 562
BspLI GGNNCC 3 cut(s) 126, 159, 411
BspT107I GGYRCC 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 119, 214, 396
BssMI GATC 1 cut(s) 358
BssT1I CCWWGG 2 cut(s) 214, 396
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 4 cut(s) 14, 295, 582, 603
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 300, 538, 570
BstEII GGTNACC 1 cut(s) 347
BstF5I GGATG 1 cut(s) 209
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 120
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 23, 218, 466
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
Bsu36I CCTNAGG 1 cut(s) 570
BtsCI GGATG 1 cut(s) 209
BtsIMutI CAGTG 3 cut(s) 300, 413, 546
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 2 cut(s) 299, 545
Cfr10I RCCGGY 1 cut(s) 127
Csp6I GTAC 4 cut(s) 182, 257, 291, 410
CviAII CATG 2 cut(s) 196, 406
CviQI GTAC 4 cut(s) 182, 257, 291, 410
DdeI CTNAG 3 cut(s) 300, 538, 570
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 2 cut(s) 214, 396
Eco31I GGTCTC 1 cut(s) 541
Eco32I GATATC 1 cut(s) 403
Eco57I CTGAAG 3 cut(s) 374, 452, 567
Eco81I CCTNAGG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 514
Eco91I GGTNACC 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 403
EcoT14I CCWWGG 2 cut(s) 214, 396
ErhI CCWWGG 2 cut(s) 214, 396
FaeI CATG 2 cut(s) 199, 409
FaiI YATR 6 cut(s) 111, 197, 238, 339, 407, 525
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 2 cut(s) 195, 405
Fnu4HI GCNGC 4 cut(s) 37, 207, 480, 483
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 4 cut(s) 37, 207, 480, 483
GluI GCNGC 4 cut(s) 37, 207, 480, 483
HapII CCGG 3 cut(s) 128, 288, 585
Hin1II CATG 2 cut(s) 199, 409
HinfI GANTC 3 cut(s) 314, 436, 565
HpaII CCGG 3 cut(s) 128, 288, 585
HphI GGTGA 2 cut(s) 284, 359
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 4 cut(s) 362, 442, 516, 569
HpyAV CCTTC 2 cut(s) 243, 526
HpyCH4III ACNGT 4 cut(s) 14, 295, 582, 603
HpyCH4V TGCA 5 cut(s) 39, 70, 206, 463, 527
HpyF3I CTNAG 3 cut(s) 300, 538, 570
Hsp92II CATG 2 cut(s) 199, 409
KpnI GGTACC 1 cut(s) 413
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 3 cut(s) 23, 218, 466
LweI GCATC 4 cut(s) 110, 181, 193, 218
MaeIII GTNAC 2 cut(s) 295, 347
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 6 cut(s) 323, 353, 368, 392, 445, 560
MflI RGATCY 1 cut(s) 358
MlyI GAGTC 2 cut(s) 430, 559
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 6 cut(s) 19, 43, 321, 376, 501, 565
MroNI GCCGGC 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 552
MspI CCGG 3 cut(s) 128, 288, 585
MspR9I CCNGG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 1 cut(s) 120
NaeI GCCGGC 1 cut(s) 129
NdeII GATC 1 cut(s) 358
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 2 cut(s) 199, 409
NlaIV GGNNCC 3 cut(s) 126, 159, 411
NmuCI GTSAC 2 cut(s) 295, 347
PctI GAATGC 1 cut(s) 153
PdiI GCCGGC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 4 cut(s) 38, 208, 481, 484
PleI GAGTC 2 cut(s) 430, 559
PpsI GAGTC 2 cut(s) 430, 559
Psp6I CCWGG 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 126, 159, 411
PstNI CAGNNNCTG 2 cut(s) 299, 545
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 4 cut(s) 183, 258, 292, 411
RsaNI GTAC 4 cut(s) 182, 257, 291, 410
SatI GCNGC 4 cut(s) 37, 207, 480, 483
Sau3AI GATC 1 cut(s) 358
SchI GAGTC 2 cut(s) 430, 559
ScrFI CCNGG 1 cut(s) 120
SetI ASST 5 cut(s) 354, 378, 387, 493, 537
SfaNI GCATC 4 cut(s) 110, 181, 193, 218
SmlI CTYRAG 2 cut(s) 362, 440
SmoI CTYRAG 2 cut(s) 362, 440
SsiI CCGC 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 2 cut(s) 214, 396
TaaI ACNGT 4 cut(s) 14, 295, 582, 603
TatI WGTACW 1 cut(s) 181
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 1 cut(s) 314
TscAI CASTG 3 cut(s) 300, 420, 546
TseFI GTSAC 2 cut(s) 295, 347
TseI GCWGC 3 cut(s) 36, 206, 479
Tsp45I GTSAC 2 cut(s) 295, 347
TspDTI ATGAA 4 cut(s) 126, 212, 324, 354
TspRI CASTG 3 cut(s) 300, 420, 546
Van91I CCANNNNNTGG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.