Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012651.1

Orthogroup ID

OG0010578

Physical Location & Seq

Genomic Coordinates Reverse (-)

17024 .. 20545

Gene Structure 3522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012651.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atggaaaacaacagtaaagagcaggaggaaaacggctgcaaagagcaggaggaaaacaccaacaaagagcaggaagtagagccatcatcatcatcaacagcatcggtttatgaaataccaggggagccggctgttgtcattgatggaatgcttgtggttcccccaagtaatggctcttttgtactctctgatgccatgaatgatgcagcatcccttggaaatacaagatttggtgtatggttggttggaagggaagtacgaaagttgttcggtgagcaatactactccggtacagtgactgagtttgatgaagaatcaggctggtggagggttgtgtatgaagatggtgaccttgaagatcttgagtggaatgagctggaagaggtgcttcagcccttggatatcatggtaccactgaaatcgttagccctgaagactctcaagaaaaccaagaagcctgtgcagaaatccaagagtgctgcggctcaacctcaaaaacagaaatccaaacgctcgggaagttatgcaaagaaggtctcagtgcctgaagatgttccaatgatgactcccgaggcaaaacagtccgaaatttctcatgaacttgctcttgtagaactgaacttggaacgacgagttaaagctgttgaagcggaatttgttaccttggacctaggatatttatcaatgattgcctttgactccaagattgaagatccaatgaaattggagagtaaggtagagaaaagtaattgcctggaagaagaaatcatgtcagcagagcaattgaagcatgaggagagatcaatggaagcatcatcatgtcaaatggctatggaattgaaatgtcagcagagagatatagttgctgcaaatattttggtccagatggccaatgaagattctgttttgcttcatcacagattaagtttgcatggagtgaagcgtagcatgaaagggaagccgagaatgaggtgggaaacgaaaggtgatagaataggagtgggtgataatgattccaaaggggctaggagaggcgccaagtttattgcaaagcgtcagcaagctgcgtttggaggtcagacgaatgatgcagatagtgtagtcttaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook LBR_tudor

Protein Analysis

370

Amino Acids

41.34

Weight (kDa)

5.1

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010578)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14870 FvH4_6g14870 FvH4_6g14870 FvH4_6g14870
malus_domestica	MD12G1130200.v1.1
prunus_persica	Prupe.6G245200_v2.0.a1
pyrus_communis	pycom12g12630
rosa_chinensis	RchiOBHm_Chr3g0468081
rosa_laevigata	RLG00000024451
rosa_multiflora	Rmu_sc0012651.1_g000007
rosa_roxburghii	Rroxscaffold_6G00413070
rosa_rugosa	Rorug03G0092400 Rorug03G0092500
rosa_samantha	Rh3AG140900 Rh3BG162300 Rh3BG162400 Rh3CG162100 Rh3CG162200 Rh3DG162700 Rh3DG162800
rosa_wichuraiana	Rw3G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	409
AccB1I	GGYRCC	2 cut(s)	409, 1034
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	2 cut(s)	482, 650
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	2 cut(s)	588, 653
AcuI	CTGAAG	3 cut(s)	374, 452, 567
AcyI	GRCGYC	1 cut(s)	1035
AfaI	GTAC	4 cut(s)	183, 258, 292, 411
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	356, 647, 710, 787, 841
AjnI	CCWGG	2 cut(s)	118, 753
AluBI	AGCT	3 cut(s)	376, 641, 1064
AluI	AGCT	3 cut(s)	376, 641, 1064
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	1 cut(s)	707
AlwNI	CAGNNNCTG	2 cut(s)	299, 545
Ama87I	CYCGRG	2 cut(s)	514, 569
AoxI	GGCC	1 cut(s)	888
ApeKI	GCWGC	5 cut(s)	36, 206, 479, 866, 1064
ApoI	RAATTY	2 cut(s)	588, 653
Asp700I	GAANNNNTTC	1 cut(s)	552
Asp718I	GGTACC	1 cut(s)	409
AspA2I	CCTAGG	1 cut(s)	670
AspLEI	GCGC	1 cut(s)	1037
AspS9I	GGNCC	2 cut(s)	667, 880
AsuHPI	GGTGA	4 cut(s)	284, 359, 998, 1016
AvaI	CYCGRG	2 cut(s)	514, 569
AvaII	GGWCC	2 cut(s)	667, 880
AvrII	CCTAGG	1 cut(s)	670
BalI	TGGCCA	1 cut(s)	890
BanI	GGYRCC	2 cut(s)	409, 1034
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	5 cut(s)	23, 218, 466, 853, 1051
BccI	CCATC	4 cut(s)	91, 137, 338, 880
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	120, 755
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	2 cut(s)	671, 1026
BfoI	RGCGCY	1 cut(s)	1038
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	6 cut(s)	37, 207, 480, 483, 867, 1065
BlnI	CCTAGG	1 cut(s)	670
BlsI	GCNGC	6 cut(s)	38, 208, 481, 484, 868, 1066
Bme1390I	CCNGG	2 cut(s)	120, 755
Bme18I	GGWCC	2 cut(s)	667, 880
BmeT110I	CYCGRG	2 cut(s)	514, 569
BmgT120I	GGNCC	2 cut(s)	667, 880
BmiI	GGNNCC	4 cut(s)	126, 159, 411, 1036
BmrFI	CCNGG	2 cut(s)	120, 755
BmsI	GCATC	6 cut(s)	110, 181, 193, 218, 821, 1078
BpiI	GAAGAC	1 cut(s)	440
BpuEI	CTTGAG	2 cut(s)	383, 425
BsaBI	GATNNNNATC	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	1035
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	6 cut(s)	119, 214, 396, 570, 663, 670
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	679
BseBI	CCWGG	2 cut(s)	120, 755
BseDI	CCNNGG	6 cut(s)	119, 214, 396, 570, 663, 670
BseGI	GGATG	1 cut(s)	209
BseJI	GATNNNNATC	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	2 cut(s)	291, 552
BseRI	GAGGAG	1 cut(s)	809
BseXI	GCAGC	5 cut(s)	23, 218, 466, 853, 1051
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	890
BshNI	GGYRCC	2 cut(s)	409, 1034
BsiHKCI	CYCGRG	2 cut(s)	514, 569
BsiSI	CCGG	2 cut(s)	128, 288
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	890
Bso31I	GGTCTC	1 cut(s)	541
BsoBI	CYCGRG	2 cut(s)	514, 569
Bsp143I	GATC	3 cut(s)	358, 712, 800
BspACI	CCGC	2 cut(s)	482, 650
BspANI	GGCC	1 cut(s)	890
BspCNI	CTCAG	2 cut(s)	292, 551
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	4 cut(s)	126, 159, 411, 1036
BspPI	GGATC	1 cut(s)	707
BspT107I	GGYRCC	2 cut(s)	409, 1034
BspTNI	GGTCTC	1 cut(s)	541
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	6 cut(s)	119, 214, 396, 570, 663, 670
BssMI	GATC	3 cut(s)	358, 712, 800
BssNI	GRCGYC	1 cut(s)	1035
BssT1I	CCWWGG	4 cut(s)	214, 396, 663, 670
Bst2UI	CCWGG	2 cut(s)	120, 755
Bst4CI	ACNGT	3 cut(s)	14, 295, 582
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	1035
BstC8I	GCNNGC	2 cut(s)	129, 1062
BstDEI	CTNAG	2 cut(s)	300, 538
BstEII	GGTNACC	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	1038
BstHHI	GCGC	1 cut(s)	1037
BstKTI	GATC	3 cut(s)	361, 715, 803
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	3 cut(s)	358, 712, 800
BstMWI	GCNNNNNNNGC	2 cut(s)	647, 787
BstNI	CCWGG	2 cut(s)	120, 755
BstPI	GGTNACC	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	118, 753
BstV1I	GCAGC	5 cut(s)	23, 218, 466, 853, 1051
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	2 cut(s)	358, 712
BstYI	RGATCY	2 cut(s)	358, 712
BsuRI	GGCC	1 cut(s)	890
BtsCI	GGATG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	300, 413, 546
Cac8I	GCNNGC	2 cut(s)	129, 1062
CaiI	CAGNNNCTG	2 cut(s)	299, 545
CciI	TCATGA	1 cut(s)	595
CfoI	GCGC	1 cut(s)	1037
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	667, 880
CseI	GACGC	1 cut(s)	1043
Csp6I	GTAC	4 cut(s)	182, 257, 291, 410
CviAII	CATG	8 cut(s)	196, 406, 596, 769, 791, 819, 932, 949
CviQI	GTAC	4 cut(s)	182, 257, 291, 410
DdeI	CTNAG	2 cut(s)	300, 538
DinI	GGCGCC	1 cut(s)	1036
DpnI	GATC	3 cut(s)	360, 714, 802
DpnII	GATC	3 cut(s)	358, 712, 800
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	4 cut(s)	214, 396, 663, 670
Eco31I	GGTCTC	1 cut(s)	541
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	667, 880
Eco57I	CTGAAG	3 cut(s)	374, 452, 567
Eco88I	CYCGRG	2 cut(s)	514, 569
Eco91I	GGTNACC	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	118, 753
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	4 cut(s)	214, 396, 663, 670
EgeI	GGCGCC	1 cut(s)	1036
EheI	GGCGCC	1 cut(s)	1036
ErhI	CCWWGG	4 cut(s)	214, 396, 663, 670
FaeI	CATG	8 cut(s)	199, 409, 599, 772, 794, 822, 935, 952
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	8 cut(s)	195, 405, 595, 768, 790, 818, 931, 948
Fnu4HI	GCNGC	6 cut(s)	37, 207, 480, 483, 867, 1065
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	6 cut(s)	37, 207, 480, 483, 867, 1065
FspBI	CTAG	2 cut(s)	671, 1026
GlaI	GCGC	1 cut(s)	1036
GluI	GCNGC	6 cut(s)	37, 207, 480, 483, 867, 1065
HaeII	RGCGCY	1 cut(s)	1038
HaeIII	GGCC	1 cut(s)	890
HapII	CCGG	2 cut(s)	128, 288
HgaI	GACGC	1 cut(s)	1043
HhaI	GCGC	1 cut(s)	1037
Hin1I	GRCGYC	1 cut(s)	1035
Hin1II	CATG	8 cut(s)	199, 409, 599, 772, 794, 822, 935, 952
Hin6I	GCGC	1 cut(s)	1035
HinP1I	GCGC	1 cut(s)	1035
HinfI	GANTC	6 cut(s)	314, 436, 565, 698, 899, 1013
HpaII	CCGG	2 cut(s)	128, 288
HphI	GGTGA	4 cut(s)	284, 359, 998, 1016
Hpy188I	TCNGA	3 cut(s)	190, 586, 1080
Hpy188III	TCNNGA	6 cut(s)	362, 442, 516, 569, 596, 883
Hpy99I	CGWCG	1 cut(s)	633
HpyAV	CCTTC	2 cut(s)	243, 526
HpyCH4III	ACNGT	3 cut(s)	14, 295, 582
HpyCH4V	TGCA	8 cut(s)	39, 206, 463, 527, 869, 931, 1049, 1091
HpyF10VI	GCNNNNNNNGC	2 cut(s)	647, 787
HpyF3I	CTNAG	2 cut(s)	300, 538
Hsp92I	GRCGYC	1 cut(s)	1035
Hsp92II	CATG	8 cut(s)	199, 409, 599, 772, 794, 822, 935, 952
HspAI	GCGC	1 cut(s)	1035
KasI	GGCGCC	1 cut(s)	1034
KpnI	GGTACC	1 cut(s)	413
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	358, 712, 800
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	5 cut(s)	23, 218, 466, 853, 1051
LweI	GCATC	6 cut(s)	110, 181, 193, 218, 821, 1078
MaeI	CTAG	2 cut(s)	671, 1026
MaeIII	GTNAC	3 cut(s)	295, 347, 658
MalI	GATC	3 cut(s)	360, 714, 802
MboI	GATC	3 cut(s)	358, 712, 800
MfeI	CAATTG	1 cut(s)	782
MflI	RGATCY	2 cut(s)	358, 712
MlsI	TGGCCA	1 cut(s)	890
MluCI	AATT	6 cut(s)	588, 653, 722, 748, 782, 836
MluNI	TGGCCA	1 cut(s)	890
Mly113I	GGCGCC	1 cut(s)	1035
MlyI	GAGTC	3 cut(s)	430, 559, 692
MmeI	TCCRAC	1 cut(s)	226
Mox20I	TGGCCA	1 cut(s)	890
MroNI	GCCGGC	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	890
MseI	TTAA	2 cut(s)	636, 923
MslI	CAYNNNNRTG	1 cut(s)	817
Msp20I	TGGCCA	1 cut(s)	890
MspI	CCGG	2 cut(s)	128, 288
MspR9I	CCNGG	2 cut(s)	120, 755
MunI	CAATTG	1 cut(s)	782
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	2 cut(s)	120, 755
MwoI	GCNNNNNNNGC	2 cut(s)	647, 787
NaeI	GCCGGC	1 cut(s)	129
NarI	GGCGCC	1 cut(s)	1035
NdeII	GATC	3 cut(s)	358, 712, 800
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	8 cut(s)	199, 409, 599, 772, 794, 822, 935, 952
NlaIV	GGNNCC	4 cut(s)	126, 159, 411, 1036
NmeAIII	GCCGAG	1 cut(s)	987
NmuCI	GTSAC	2 cut(s)	295, 347
PagI	TCATGA	1 cut(s)	595
PctI	GAATGC	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	314, 899, 1013
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	38, 208, 481, 484, 868, 1066
PleI	GAGTC	3 cut(s)	430, 559, 692
PluTI	GGCGCC	1 cut(s)	1038
PpsI	GAGTC	3 cut(s)	430, 559, 692
Psp6I	CCWGG	2 cut(s)	118, 753
PspEI	GGTNACC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	118, 753
PspN4I	GGNNCC	4 cut(s)	126, 159, 411, 1036
PspPI	GGNCC	2 cut(s)	667, 880
PstNI	CAGNNNCTG	2 cut(s)	299, 545
PsuI	RGATCY	2 cut(s)	358, 712
RsaI	GTAC	4 cut(s)	183, 258, 292, 411
RsaNI	GTAC	4 cut(s)	182, 257, 291, 410
RseI	CAYNNNNRTG	1 cut(s)	817
SaqAI	TTAA	2 cut(s)	636, 923
SatI	GCNGC	6 cut(s)	37, 207, 480, 483, 867, 1065
Sau3AI	GATC	3 cut(s)	358, 712, 800
Sau96I	GGNCC	2 cut(s)	667, 880
SchI	GAGTC	3 cut(s)	430, 559, 692
ScrFI	CCNGG	2 cut(s)	120, 755
SfaNI	GCATC	6 cut(s)	110, 181, 193, 218, 821, 1078
SfoI	GGCGCC	1 cut(s)	1036
SinI	GGWCC	2 cut(s)	667, 880
SmiMI	CAYNNNNRTG	1 cut(s)	817
SmlI	CTYRAG	2 cut(s)	362, 440
SmoI	CTYRAG	2 cut(s)	362, 440
Sse9I	AATT	6 cut(s)	588, 653, 722, 748, 782, 836
SsiI	CCGC	2 cut(s)	482, 650
SspDI	GGCGCC	1 cut(s)	1034
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	2 cut(s)	671, 1026
StyD4I	CCNGG	2 cut(s)	118, 753
StyI	CCWWGG	4 cut(s)	214, 396, 663, 670
TaaI	ACNGT	3 cut(s)	14, 295, 582
TasI	AATT	6 cut(s)	588, 653, 722, 748, 782, 836
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	3 cut(s)	314, 899, 1013
Tru1I	TTAA	2 cut(s)	636, 923
Tru9I	TTAA	2 cut(s)	636, 923
TscAI	CASTG	3 cut(s)	300, 420, 546
TseFI	GTSAC	2 cut(s)	295, 347
TseI	GCWGC	5 cut(s)	36, 206, 479, 866, 1064
Tsp45I	GTSAC	2 cut(s)	295, 347
TspDTI	ATGAA	9 cut(s)	126, 212, 324, 354, 612, 734, 902, 909, 965
TspRI	CASTG	3 cut(s)	300, 420, 546
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	667, 880
XapI	RAATTY	2 cut(s)	588, 653
XmaJI	CCTAGG	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	2 cut(s)	671, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.