Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013957

Physical Location & Seq

Genomic Coordinates Reverse (-)

9355794 .. 9358532

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGGCTTTAACCCGCCTTGCTAAGCCCTCGTTCGCATCGCGCTCCCCTATCTCATATCTCAGCCGGTGCTTGTATTCAGGCGTGGCCTCCGAGCCCAGTTCTCACGCCGCGTCGTCGTACAACCCTCACCTGGGGCCCAAGCCCAGTCGCTTGGTCAACGATTCCAAGAACCGGAGCGTACAGTGGGTCTTCCTGGGCTCGCCGGGAGTCGGGAAAGGCACGTACGCTAGTCGGTTATCTAATCTCCTTGGCGTGCCTCACATCGCCACCGGAGATCTCGTCCGCGAGGAACTCGTTGCTTCCGGTCCTCTCTCTCAACAGTTATCGGAGATTGTGAATCAGGGGAAGCTGGTTTCCGATGAGATTATAATAAATTTGTTGTCCAAGAGATTGGAGGCTGGAGAAGCTAAAGGCGAGCTAGGTTTTATTCTTGATGGTTTTCCACGAACCATTAGACAAGCGGAAATTTTGGAGGGGGTGACAGATATTGACTTGGTGCTAAATTTGAAGCTCCGGGAAGATGTATTGCTTGAGAAATGCCTAGGTAGACGAACTTGTGGTCAGTGTGGTGGAAATTTTAATGTGGCTTCAATTAATGTCAAGGGCTCGAACGGTTGTCCTGCAATTAGCATGGCTCCGCTTCTGCCCCCTCAGCATTGTATGTCGAAGCTTGTTACTCGGGCAGATGATACTGAAGAGGTGATCAAGCATCGGATTGATATTTACAATGAGAAGAGTCGGCCTGTGGAAGAATTCTATCGTCGTAGGGGGAAATTGTTGGAGTTTGATTTGCCTGGAGGGATTCCAGAGTCTTGGCCAAAGTTGCTAGAAGTTCTTGATCTTGATGACTACAAGGAACAGCAATCTGCTGCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006139 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0046940 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0071704 GO:0090407 GO:0099402 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

294

Amino Acids

31.99

Weight (kDa)

6.96

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	66 - 258	7.8e-38	Adenylate kinase
AAA_17	PF13207	66 - 187	5.4e-21	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37250
fragaria_vesca	FvH4_6g15070
malus_domestica	MD04G1113300.v1.1
prunus_persica	Prupe.6G244100_v2.0.a1 Prupe.6G244100_v2.0.a1
pyrus_communis	pycom04g10200 pycom12g12510
rosa_chinensis	RchiOBHm_Chr3g0468251
rosa_laevigata	RLG00000024438
rosa_multiflora	Rmu_sc0004524.1_g000001 Rmu_sc0005436.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412860
rosa_rugosa	Rorug03G0094700
rosa_samantha	Rh3AG142200 Rh3BG163800 Rh3DG164400
rosa_wichuraiana	Rw3G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	3 cut(s)	43, 113, 288
AciI	CCGC	6 cut(s)	5, 16, 111, 286, 464, 641
AcoI	YGGCCR	1 cut(s)	818
AcsI	RAATTY	5 cut(s)	376, 468, 505, 577, 755
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	3 cut(s)	122, 183, 227
AfiI	CCNNNNNNNGG	4 cut(s)	133, 134, 174, 212
AgsI	TTSAA	2 cut(s)	511, 594
AjnI	CCWGG	3 cut(s)	132, 195, 796
AluBI	AGCT	5 cut(s)	352, 410, 421, 514, 673
AluI	AGCT	5 cut(s)	352, 410, 421, 514, 673
Ama87I	CYCGRG	1 cut(s)	681
AoxI	GGCC	4 cut(s)	87, 137, 743, 818
ApaI	GGGCCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	872, 875
ApoI	RAATTY	5 cut(s)	376, 468, 505, 577, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AseI	ATTAAT	1 cut(s)	597
AspA2I	CCTAGG	1 cut(s)	544
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	137, 138, 308
AsuC2I	CCSGG	2 cut(s)	207, 518
AsuHPI	GGTGA	3 cut(s)	122, 493, 715
AvaI	CYCGRG	1 cut(s)	681
AvaII	GGWCC	1 cut(s)	308
AvrII	CCTAGG	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	820
BanII	GRGCYC	4 cut(s)	99, 141, 203, 611
BbsI	GAAGAC	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	1 cut(s)	859
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	3 cut(s)	134, 197, 798
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	2 cut(s)	207, 518
BfaI	CTAG	4 cut(s)	231, 422, 545, 830
BfmI	CTRYAG	1 cut(s)	873
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	4 cut(s)	6, 111, 873, 876
BlnI	CCTAGG	1 cut(s)	544
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	4 cut(s)	7, 112, 874, 877
Bme1390I	CCNGG	5 cut(s)	134, 197, 207, 518, 798
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	681
BmgT120I	GGNCC	3 cut(s)	137, 138, 308
BmiI	GGNNCC	3 cut(s)	138, 139, 639
BmrFI	CCNGG	5 cut(s)	134, 197, 207, 518, 798
BmrI	ACTGGG	2 cut(s)	93, 141
BmsI	GCATC	2 cut(s)	47, 721
BmuI	ACTGGG	2 cut(s)	93, 141
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	423, 819
Bpu10I	CCTNAGC	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	207, 518
BsaAI	YACGTR	1 cut(s)	225
BsaJI	CCNNGG	4 cut(s)	133, 196, 250, 544
BsaWI	WCCGGW	3 cut(s)	174, 272, 305
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 134, 174, 212
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	99, 147
BseBI	CCWGG	3 cut(s)	134, 197, 798
BseDI	CCNNGG	4 cut(s)	133, 196, 250, 544
BseLI	CCNNNNNNNGG	4 cut(s)	133, 134, 174, 212
BseMII	CTCAG	2 cut(s)	76, 668
BseNI	ACTGG	2 cut(s)	99, 147
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	859
Bsh1236I	CGCG	3 cut(s)	43, 113, 288
BshFI	GGCC	4 cut(s)	89, 139, 745, 820
BsiHKCI	CYCGRG	1 cut(s)	681
BsiSI	CCGG	6 cut(s)	67, 175, 206, 273, 306, 517
BsiWI	CGTACG	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	133, 134, 174, 212
BsnI	GGCC	4 cut(s)	89, 139, 745, 820
BsoBI	CYCGRG	1 cut(s)	681
Bsp120I	GGGCCC	1 cut(s)	137
Bsp1286I	GDGCHC	4 cut(s)	99, 141, 203, 611
Bsp143I	GATC	3 cut(s)	277, 705, 841
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	6 cut(s)	5, 16, 111, 286, 464, 641
BspANI	GGCC	4 cut(s)	89, 139, 745, 820
BspCNI	CTCAG	2 cut(s)	75, 667
BspFNI	CGCG	3 cut(s)	43, 113, 288
BspLI	GGNNCC	3 cut(s)	138, 139, 639
BspMAI	CTGCAG	1 cut(s)	877
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	99, 147
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	4 cut(s)	133, 196, 250, 544
BssMI	GATC	3 cut(s)	277, 705, 841
BssT1I	CCWWGG	2 cut(s)	250, 544
Bst2UI	CCWGG	3 cut(s)	134, 197, 798
Bst4CI	ACNGT	3 cut(s)	186, 324, 617
Bst6I	CTCTTC	2 cut(s)	693, 731
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	203, 257, 419
BstDEI	CTNAG	3 cut(s)	24, 62, 654
BstFNI	CGCG	3 cut(s)	43, 113, 288
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	3 cut(s)	280, 708, 844
BstMBI	GATC	3 cut(s)	277, 705, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 655, 826
BstNI	CCWGG	3 cut(s)	134, 197, 798
BstSCI	CCNGG	5 cut(s)	132, 195, 205, 516, 796
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	3 cut(s)	43, 113, 288
BstV1I	GCAGC	1 cut(s)	859
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	3 cut(s)	154, 394, 816
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	4 cut(s)	89, 139, 745, 820
BtgZI	GCGATG	2 cut(s)	24, 250
BtsIMutI	CAGTG	2 cut(s)	191, 572
Cac8I	GCNNGC	3 cut(s)	203, 257, 419
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	3 cut(s)	137, 138, 308
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	121, 182, 226
CviAII	CATG	1 cut(s)	634
CviQI	GTAC	3 cut(s)	121, 182, 226
DdeI	CTNAG	3 cut(s)	24, 62, 654
DpnI	GATC	3 cut(s)	279, 707, 843
DpnII	GATC	3 cut(s)	277, 705, 841
EaeI	YGGCCR	1 cut(s)	818
Eam1104I	CTCTTC	2 cut(s)	693, 731
EarI	CTCTTC	2 cut(s)	693, 731
Eco130I	CCWWGG	2 cut(s)	250, 544
Eco24I	GRGCYC	4 cut(s)	99, 141, 203, 611
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	681
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	3 cut(s)	132, 195, 796
EcoT14I	CCWWGG	2 cut(s)	250, 544
EcoT38I	GRGCYC	4 cut(s)	99, 141, 203, 611
ErhI	CCWWGG	2 cut(s)	250, 544
FaeI	CATG	1 cut(s)	637
FaiI	YATR	4 cut(s)	58, 371, 635, 665
FatI	CATG	1 cut(s)	633
FauI	CCCGC	1 cut(s)	23
FbaI	TGATCA	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	4 cut(s)	6, 111, 873, 876
FriOI	GRGCYC	4 cut(s)	99, 141, 203, 611
Fsp4HI	GCNGC	4 cut(s)	6, 111, 873, 876
FspBI	CTAG	4 cut(s)	231, 422, 545, 830
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	4 cut(s)	6, 111, 873, 876
GsuI	CTGGAG	2 cut(s)	423, 819
HaeIII	GGCC	4 cut(s)	89, 139, 745, 820
HapII	CCGG	6 cut(s)	67, 175, 206, 273, 306, 517
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	637
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	6 cut(s)	164, 210, 340, 739, 805, 812
HpaII	CCGG	6 cut(s)	67, 175, 206, 273, 306, 517
HphI	GGTGA	3 cut(s)	122, 493, 715
Hpy166II	GTNNAC	2 cut(s)	160, 551
Hpy188I	TCNGA	4 cut(s)	94, 331, 361, 717
Hpy188III	TCNNGA	5 cut(s)	214, 434, 809, 839, 845
Hpy8I	GTNNAC	2 cut(s)	160, 551
Hpy99I	CGWCG	3 cut(s)	118, 121, 768
HpyCH4III	ACNGT	3 cut(s)	186, 324, 617
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	626, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 655, 826
HpyF3I	CTNAG	3 cut(s)	24, 62, 654
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	637
HspAI	GCGC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	3 cut(s)	277, 705, 841
LmnI	GCTCC	4 cut(s)	50, 177, 519, 643
Lsp1109I	GCAGC	1 cut(s)	859
LweI	GCATC	2 cut(s)	47, 721
MaeI	CTAG	4 cut(s)	231, 422, 545, 830
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	481, 676
MalI	GATC	3 cut(s)	279, 707, 843
MboI	GATC	3 cut(s)	277, 705, 841
MboII	GAAGA	5 cut(s)	184, 533, 710, 748, 764
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	4 cut(s)	99, 141, 203, 611
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	8 cut(s)	376, 468, 505, 577, 594, 627, 755, 776
MluNI	TGGCCA	1 cut(s)	820
MlyI	GAGTC	3 cut(s)	219, 748, 821
MmeI	TCCRAC	1 cut(s)	762
Mox20I	TGGCCA	1 cut(s)	820
MscI	TGGCCA	1 cut(s)	820
MseI	TTAA	3 cut(s)	11, 582, 597
Msp20I	TGGCCA	1 cut(s)	820
MspI	CCGG	6 cut(s)	67, 175, 206, 273, 306, 517
MspR9I	CCNGG	5 cut(s)	134, 197, 207, 518, 798
MvaI	CCWGG	3 cut(s)	134, 197, 798
MvnI	CGCG	3 cut(s)	43, 113, 288
MwoI	GCNNNNNNNGC	3 cut(s)	407, 655, 826
NciI	CCSGG	2 cut(s)	207, 518
NdeII	GATC	3 cut(s)	277, 705, 841
NlaIII	CATG	1 cut(s)	637
NlaIV	GGNNCC	3 cut(s)	138, 139, 639
NmuCI	GTSAC	1 cut(s)	481
PfeI	GAWTC	3 cut(s)	164, 340, 805
Pfl23II	CGTACG	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	4 cut(s)	7, 112, 874, 877
PleI	GAGTC	3 cut(s)	218, 747, 820
PpsI	GAGTC	3 cut(s)	218, 747, 820
Ppu21I	YACGTR	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	132, 195, 796
PspGI	CCWGG	3 cut(s)	132, 195, 796
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	138, 139, 639
PspOMI	GGGCCC	1 cut(s)	137
PspPI	GGNCC	3 cut(s)	137, 138, 308
PstI	CTGCAG	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	3 cut(s)	122, 183, 227
RsaNI	GTAC	3 cut(s)	121, 182, 226
SaqAI	TTAA	3 cut(s)	11, 582, 597
SatI	GCNGC	4 cut(s)	6, 111, 873, 876
Sau3AI	GATC	3 cut(s)	277, 705, 841
Sau96I	GGNCC	3 cut(s)	137, 138, 308
SchI	GAGTC	3 cut(s)	219, 748, 821
ScrFI	CCNGG	5 cut(s)	134, 197, 207, 518, 798
SduI	GDGCHC	4 cut(s)	99, 141, 203, 611
SfaNI	GCATC	2 cut(s)	47, 721
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	8 cut(s)	376, 468, 505, 577, 594, 627, 755, 776
SsiI	CCGC	6 cut(s)	5, 16, 111, 286, 464, 641
SspMI	CTAG	4 cut(s)	231, 422, 545, 830
StyD4I	CCNGG	5 cut(s)	132, 195, 205, 516, 796
StyI	CCWWGG	2 cut(s)	250, 544
TaaI	ACNGT	3 cut(s)	186, 324, 617
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	611, 668
TasI	AATT	8 cut(s)	376, 468, 505, 577, 594, 627, 755, 776
TauI	GCSGC	2 cut(s)	8, 113
TfiI	GAWTC	3 cut(s)	164, 340, 805
Tru1I	TTAA	3 cut(s)	11, 582, 597
Tru9I	TTAA	3 cut(s)	11, 582, 597
TscAI	CASTG	2 cut(s)	191, 572
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	872, 875
Tsp45I	GTSAC	1 cut(s)	481
TspRI	CASTG	2 cut(s)	191, 572
VpaK11BI	GGWCC	1 cut(s)	308
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	5 cut(s)	376, 468, 505, 577, 755
XmaJI	CCTAGG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	4 cut(s)	231, 422, 545, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.