Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013957

Physical Location & Seq

Genomic Coordinates Forward (+)

35338704 .. 35339978

Gene Structure 1275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGGCTTTAACCCGCCTTGCAAAGCCCTCGTTGGCACCACACTCCCCTATCTCCTACCTGAGCCGGTGCTTGTATTCCGGCCTAGGATCCGAGCCCAGTTCTCACGCCGCGGCGTCTTACAGCCCGCACTTGGGGCCCAAGCCCAGTCTCTCGGTCAAGGATCCGAAGGACCGGAACGTACAGTGGGTCTTTTTGGGCTCGCCGGGAGTCGGAAAAGGCACGTACGCCAGCCGTTTATCTAATCTCCTCGGCGTGCCTCACATCGCTACCGGAGATCTCGTCCGCGAAGAACTCGCTGCCTCCGTTATCGGAGATTGTGAACCAGGGAAGCTGGTTTCCGATGAGATTATAATAAACTTGTTGTCCAAGAGATTGGAGGCTGGGGAAGCTAAAGGCGAGTTAGGTTTTATTCTTGATGGTTTTCCACGAACCATTAGACAAGCGGAAATATTGGAAGGGGTGACGGATATTGACTTGGTGCTAAATCTGAAGCTCCGGGAAGATGTGCTGCTTGAGAAATGCCTTGGTAGACGAACCTGTAGTCAGTGCGGTGGAAATTTTAATGTGGCCTCGATTAATGTCAAGGGCTCGAATGGGAGTCCTGCAATTAGCATGGCTCCGCTTCTTCCTCCTCAGCATTGTATGTCGAAGCTTGTTACTCGCGCGGATGATACCGAAGAGGGGAAATTGTTGGAGTTTGATTTGCCTGGAGGGATTCCAGAGTCTTGGCCAAAGTTGCTTGAAGTTCTTGATCTTGATGACTACAAGGAGCAGCAGTCTGCTGCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006139 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0046940 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0071704 GO:0090407 GO:0099402 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

264

Amino Acids

28.21

Weight (kDa)

5.46

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	66 - 177	3.6e-25	Adenylate kinase
AAA_17	PF13207	66 - 180	4.1e-18	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37250
fragaria_vesca	FvH4_6g15070
malus_domestica	MD04G1113300.v1.1
prunus_persica	Prupe.6G244100_v2.0.a1 Prupe.6G244100_v2.0.a1
pyrus_communis	pycom04g10200 pycom12g12510
rosa_chinensis	RchiOBHm_Chr3g0468251
rosa_laevigata	RLG00000024438
rosa_multiflora	Rmu_sc0004524.1_g000001 Rmu_sc0005436.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412860
rosa_rugosa	Rorug03G0094700
rosa_samantha	Rh3AG142200 Rh3BG163800 Rh3DG164400
rosa_wichuraiana	Rw3G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	532
AccII	CGCG	4 cut(s)	113, 288, 666, 668
AclWI	GGATC	4 cut(s)	84, 97, 158, 171
AcoI	YGGCCR	1 cut(s)	731
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	2 cut(s)	183, 227
AfiI	CCNNNNNNNGG	4 cut(s)	133, 134, 212, 684
AgsI	TTSAA	1 cut(s)	746
AjnI	CCWGG	2 cut(s)	325, 709
AluBI	AGCT	4 cut(s)	334, 392, 496, 655
AluI	AGCT	4 cut(s)	334, 392, 496, 655
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	4 cut(s)	84, 97, 158, 171
AoxI	GGCC	4 cut(s)	82, 137, 570, 731
ApaI	GGGCCC	1 cut(s)	141
ApeKI	GCWGC	5 cut(s)	299, 511, 775, 785, 788
ApoI	RAATTY	1 cut(s)	559
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AseI	ATTAAT	1 cut(s)	579
AspA2I	CCTAGG	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	668
AspS9I	GGNCC	3 cut(s)	137, 138, 172
AsuC2I	CCSGG	2 cut(s)	207, 500
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	172
AvrII	CCTAGG	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	733
BamHI	GGATCC	2 cut(s)	89, 163
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	4 cut(s)	99, 141, 203, 593
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	4 cut(s)	286, 498, 772, 787
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	219
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	2 cut(s)	327, 711
BcnI	CCSGG	2 cut(s)	207, 500
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	541, 786
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	8 cut(s)	6, 111, 114, 300, 512, 776, 786, 789
BlnI	CCTAGG	1 cut(s)	85
BlsI	GCNGC	8 cut(s)	7, 112, 115, 301, 513, 777, 787, 790
Bme1390I	CCNGG	4 cut(s)	207, 327, 500, 711
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	3 cut(s)	137, 138, 172
BmiI	GGNNCC	6 cut(s)	39, 91, 138, 139, 165, 621
BmrFI	CCNGG	4 cut(s)	207, 327, 500, 711
BmrI	ACTGGG	2 cut(s)	93, 141
BmuI	ACTGGG	2 cut(s)	93, 141
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	2 cut(s)	62, 636
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	207, 500
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	5 cut(s)	85, 111, 250, 326, 526
BsaWI	WCCGGW	2 cut(s)	174, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	267, 297, 764, 794
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 134, 212, 684
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	99, 147
BseBI	CCWGG	2 cut(s)	327, 711
BseDI	CCNNGG	5 cut(s)	85, 111, 250, 326, 526
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	4 cut(s)	133, 134, 212, 684
BseMII	CTCAG	2 cut(s)	53, 650
BseNI	ACTGG	2 cut(s)	99, 147
BseRI	GAGGAG	2 cut(s)	239, 624
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	4 cut(s)	286, 498, 772, 787
BseYI	CCCAGC	1 cut(s)	383
Bsh1236I	CGCG	4 cut(s)	113, 288, 666, 668
BshFI	GGCC	4 cut(s)	84, 139, 572, 733
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	6 cut(s)	67, 81, 175, 206, 273, 499
BsiWI	CGTACG	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	133, 134, 212, 684
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	4 cut(s)	84, 139, 572, 733
Bsp120I	GGGCCC	1 cut(s)	137
Bsp1286I	GDGCHC	4 cut(s)	99, 141, 203, 593
Bsp143I	GATC	4 cut(s)	89, 163, 277, 754
BspANI	GGCC	4 cut(s)	84, 139, 572, 733
BspCNI	CTCAG	2 cut(s)	54, 649
BspFNI	CGCG	4 cut(s)	113, 288, 666, 668
BspLI	GGNNCC	6 cut(s)	39, 91, 138, 139, 165, 621
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	4 cut(s)	84, 97, 158, 171
BspT107I	GGYRCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	99, 147
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	5 cut(s)	85, 111, 250, 326, 526
BssMI	GATC	4 cut(s)	89, 163, 277, 754
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	85, 526
Bst2UI	CCWGG	2 cut(s)	327, 711
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	4 cut(s)	128, 203, 232, 257
BstDEI	CTNAG	2 cut(s)	62, 636
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	4 cut(s)	113, 288, 666, 668
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	4 cut(s)	92, 166, 280, 757
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	89, 163, 277, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 389, 739
BstNI	CCWGG	2 cut(s)	327, 711
BstSCI	CCNGG	4 cut(s)	205, 325, 498, 709
BstSFI	CTRYAG	2 cut(s)	541, 786
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	4 cut(s)	113, 288, 666, 668
BstV1I	GCAGC	4 cut(s)	286, 498, 772, 787
BstX2I	RGATCY	3 cut(s)	89, 163, 277
BstXI	CCANNNNNNTGG	2 cut(s)	376, 729
BstYI	RGATCY	3 cut(s)	89, 163, 277
BsuRI	GGCC	4 cut(s)	84, 139, 572, 733
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	191, 554
Cac8I	GCNNGC	4 cut(s)	128, 203, 232, 257
CfoI	GCGC	1 cut(s)	668
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	3 cut(s)	137, 138, 172
Cfr42I	CCGCGG	1 cut(s)	114
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	182, 226
CviAII	CATG	1 cut(s)	616
CviQI	GTAC	2 cut(s)	182, 226
DdeI	CTNAG	2 cut(s)	62, 636
DpnI	GATC	4 cut(s)	91, 165, 279, 756
DpnII	GATC	4 cut(s)	89, 163, 277, 754
EaeI	YGGCCR	1 cut(s)	731
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Eco130I	CCWWGG	2 cut(s)	85, 526
Eco24I	GRGCYC	4 cut(s)	99, 141, 203, 593
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	325, 709
EcoT14I	CCWWGG	2 cut(s)	85, 526
EcoT38I	GRGCYC	4 cut(s)	99, 141, 203, 593
ErhI	CCWWGG	2 cut(s)	85, 526
FaeI	CATG	1 cut(s)	619
FaiI	YATR	3 cut(s)	353, 617, 647
FatI	CATG	1 cut(s)	615
FauI	CCCGC	2 cut(s)	23, 135
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	8 cut(s)	6, 111, 114, 300, 512, 776, 786, 789
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	4 cut(s)	99, 141, 203, 593
Fsp4HI	GCNGC	8 cut(s)	6, 111, 114, 300, 512, 776, 786, 789
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	8 cut(s)	6, 111, 114, 300, 512, 776, 786, 789
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	4 cut(s)	84, 139, 572, 733
HapII	CCGG	6 cut(s)	67, 81, 175, 206, 273, 499
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	668
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	619
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	4 cut(s)	210, 601, 718, 725
HpaII	CCGG	6 cut(s)	67, 81, 175, 206, 273, 499
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	2 cut(s)	323, 533
Hpy188I	TCNGA	6 cut(s)	94, 168, 215, 314, 343, 492
Hpy188III	TCNNGA	4 cut(s)	416, 722, 752, 758
Hpy8I	GTNNAC	2 cut(s)	323, 533
HpyAV	CCTTC	2 cut(s)	163, 452
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	2 cut(s)	180, 224
HpyCH4V	TGCA	3 cut(s)	23, 608, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 389, 739
HpyF3I	CTNAG	2 cut(s)	62, 636
HpySE526I	ACGT	2 cut(s)	180, 224
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	619
HspAI	GCGC	1 cut(s)	666
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	89, 163, 277, 754
LmnI	GCTCC	3 cut(s)	501, 625, 772
Lsp1109I	GCAGC	4 cut(s)	286, 498, 772, 787
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	180, 224
MaeIII	GTNAC	2 cut(s)	463, 658
MalI	GATC	4 cut(s)	91, 165, 279, 756
MboI	GATC	4 cut(s)	89, 163, 277, 754
MboII	GAAGA	4 cut(s)	302, 515, 620, 692
MflI	RGATCY	3 cut(s)	89, 163, 277
MhlI	GDGCHC	4 cut(s)	99, 141, 203, 593
MlsI	TGGCCA	1 cut(s)	733
MluCI	AATT	3 cut(s)	559, 609, 689
MluNI	TGGCCA	1 cut(s)	733
MlyI	GAGTC	3 cut(s)	219, 610, 734
MmeI	TCCRAC	2 cut(s)	193, 675
Mox20I	TGGCCA	1 cut(s)	733
MscI	TGGCCA	1 cut(s)	733
MseI	TTAA	3 cut(s)	11, 564, 579
Msp20I	TGGCCA	1 cut(s)	733
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	6 cut(s)	67, 81, 175, 206, 273, 499
MspR9I	CCNGG	4 cut(s)	207, 327, 500, 711
MvaI	CCWGG	2 cut(s)	327, 711
MvnI	CGCG	4 cut(s)	113, 288, 666, 668
MwoI	GCNNNNNNNGC	3 cut(s)	136, 389, 739
NciI	CCSGG	2 cut(s)	207, 500
NdeII	GATC	4 cut(s)	89, 163, 277, 754
NlaIII	CATG	1 cut(s)	619
NlaIV	GGNNCC	6 cut(s)	39, 91, 138, 139, 165, 621
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	718
Pfl23II	CGTACG	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	498
PkrI	GCNGC	8 cut(s)	7, 112, 115, 301, 513, 777, 787, 790
PleI	GAGTC	3 cut(s)	218, 609, 733
PpsI	GAGTC	3 cut(s)	218, 609, 733
Ppu21I	YACGTR	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	579
PsiI	TTATAA	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	325, 709
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	2 cut(s)	325, 709
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	6 cut(s)	39, 91, 138, 139, 165, 621
PspOMI	GGGCCC	1 cut(s)	137
PspPI	GGNCC	3 cut(s)	137, 138, 172
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	3 cut(s)	89, 163, 277
RsaI	GTAC	2 cut(s)	183, 227
RsaNI	GTAC	2 cut(s)	182, 226
SacII	CCGCGG	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	11, 564, 579
SatI	GCNGC	8 cut(s)	6, 111, 114, 300, 512, 776, 786, 789
Sau3AI	GATC	4 cut(s)	89, 163, 277, 754
Sau96I	GGNCC	3 cut(s)	137, 138, 172
SchI	GAGTC	3 cut(s)	219, 610, 734
ScrFI	CCNGG	4 cut(s)	207, 327, 500, 711
SduI	GDGCHC	4 cut(s)	99, 141, 203, 593
SetI	ASST	9 cut(s)	63, 183, 227, 336, 394, 409, 498, 542, 657
SfcI	CTRYAG	2 cut(s)	541, 786
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	3 cut(s)	559, 609, 689
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	4 cut(s)	205, 325, 498, 709
StyI	CCWWGG	2 cut(s)	85, 526
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	2 cut(s)	183, 227
TaqI	TCGA	3 cut(s)	575, 593, 650
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	3 cut(s)	559, 609, 689
TauI	GCSGC	3 cut(s)	8, 113, 116
TfiI	GAWTC	1 cut(s)	718
Tru1I	TTAA	3 cut(s)	11, 564, 579
Tru9I	TTAA	3 cut(s)	11, 564, 579
TscAI	CASTG	2 cut(s)	191, 554
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	5 cut(s)	299, 511, 775, 785, 788
Tsp45I	GTSAC	1 cut(s)	463
TspGWI	ACGGA	2 cut(s)	295, 482
TspRI	CASTG	2 cut(s)	191, 554
VpaK11BI	GGWCC	1 cut(s)	172
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	1 cut(s)	559
XmaJI	CCTAGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	532
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.