Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004041

Physical Location & Seq

Genomic Coordinates Forward (+)

7392220 .. 7396983

Gene Structure 4764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0094700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCAAGTGCTTCCGATATGTAGCCGACTCTTGAATCAAGAGATTCTACGGGTTTCTGGAATGATGTCCAACCAAGGTTTCGGCGACTTCGACAGAATGCGACATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATGTCAAGTGTTACTGGGACAGGATTGGGTGGTTGGAATGGACTTCCTCAAGAGCAGAGATTAAGTGCACCTCATGGGATGACAATGGACTGGCAAGGTGCACCTGCGAGCCCTAGTTCATACACAGTGAAGAGGATTTTACGCTTGGAAATTCCTGTAGACACTTACCCCAACTTCAATTTTGTTGGGCGACTTCTTGGACCCAGAGGTAATTCTTTGAAACGAGTTGAAGCTACTACGGGGTGTCGTGTATACATTAGAGGCAAAGGATCTATCAAGGATCCAGACAAGGAGGACAAGCTAAGGGGAAGACCAGGCTATGAACATCTGAGCGAACCACTCCACATCTTAATTGAAGCCGATTTACCTGCCAGTGTTGTTGATATAAGGCTCAGACAGGCCCAAGAAATTATCGAAGAACTGCTCAAACCTGTGGACGAGTCACAAGATTATATTAAGAGGCAGCAATTGCGGGAGTTGGCTTTGATAAATTCAAATTTCAGAGAAGAAAGTCCTGGGCCAAGTGGCAGCGTATCTCCTTTCAATTCAAGTGGAATGAAACGTGCCAAAACAGGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006139 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0046940 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0071704 GO:0090407 GO:0099402 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

239

Amino Acids

26.57

Weight (kDa)

9.47

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	2 - 29	2.6e-06	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	102 - 189	1e-21	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02810 AT5G02810
fragaria_vesca	FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060
malus_domestica	MD04G1113200.v1.1 MD12G1128600.v1.1
prunus_persica	Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1
pyrus_communis	pycom04g10210 pycom12g12520
rosa_chinensis	RchiOBHm_Chr3g0468241
rosa_laevigata	RLG00000024439
rosa_multiflora	Rmu_sc0004524.1_g000003 Rmu_sc0005436.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412880
rosa_rugosa	Rorug03G0094600 Rorug03G0094600 Rorug03G0094700
rosa_samantha	Rh3AG142100 Rh3BG163600 Rh3DG164300
rosa_wichuraiana	Rw3G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
AasI	GACNNNNNNGTC	1 cut(s)	108
Acc36I	ACCTGC	2 cut(s)	250, 514
AccI	GTMKAC	2 cut(s)	297, 390
AciI	CCGC	1 cut(s)	610
AclWI	GGATC	3 cut(s)	413, 415, 426
AcsI	RAATTY	3 cut(s)	288, 628, 634
AgsI	TTSAA	9 cut(s)	34, 132, 316, 358, 368, 494, 633, 682, 687
AjnI	CCWGG	2 cut(s)	451, 652
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 112, 144
AluBI	AGCT	2 cut(s)	371, 439
AluI	AGCT	2 cut(s)	371, 439
Alw21I	GWGCWC	2 cut(s)	208, 241
Alw44I	GTGCAC	2 cut(s)	204, 237
AlwI	GGATC	3 cut(s)	413, 415, 426
AoxI	GGCC	2 cut(s)	537, 656
ApaLI	GTGCAC	2 cut(s)	204, 237
ApeKI	GCWGC	2 cut(s)	601, 666
ApoI	RAATTY	3 cut(s)	288, 628, 634
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AspS9I	GGNCC	3 cut(s)	338, 538, 656
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	2 cut(s)	208, 241
BamHI	GGATCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	251
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
BbsI	GAAGAC	1 cut(s)	454
Bbv12I	GWGCWC	2 cut(s)	208, 241
BbvI	GCAGC	2 cut(s)	613, 678
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BciT130I	CCWGG	2 cut(s)	453, 654
BfaI	CTAG	2 cut(s)	114, 252
BfmI	CTRYAG	1 cut(s)	294
BfuAI	ACCTGC	2 cut(s)	250, 514
BisI	GCNGC	2 cut(s)	602, 667
BlsI	GCNGC	2 cut(s)	603, 668
Bme1390I	CCNGG	2 cut(s)	453, 654
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	3 cut(s)	338, 538, 656
BmiI	GGNNCC	2 cut(s)	340, 420
BmrFI	CCNGG	2 cut(s)	453, 654
BmrI	ACTGGG	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	73, 653
Bse1I	ACTGG	3 cut(s)	157, 233, 510
BseBI	CCWGG	2 cut(s)	453, 654
BseDI	CCNNGG	2 cut(s)	73, 653
BseGI	GGATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	458, 544
BseNI	ACTGG	3 cut(s)	157, 233, 510
BseSI	GKGCMC	2 cut(s)	208, 241
BseXI	GCAGC	2 cut(s)	613, 678
BshFI	GGCC	2 cut(s)	539, 658
BsiHKAI	GWGCWC	2 cut(s)	208, 241
BslFI	GGGAC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	539, 658
Bsp1286I	GDGCHC	3 cut(s)	208, 241, 251
Bsp143I	GATC	2 cut(s)	407, 418
BspACI	CCGC	1 cut(s)	610
BspANI	GGCC	2 cut(s)	539, 658
BspCNI	CTCAG	2 cut(s)	459, 543
BspLI	GGNNCC	2 cut(s)	340, 420
BspMI	ACCTGC	2 cut(s)	250, 514
BspPI	GGATC	3 cut(s)	413, 415, 426
BsrI	ACTGG	3 cut(s)	157, 233, 510
BssECI	CCNNGG	2 cut(s)	73, 653
BssMI	GATC	2 cut(s)	407, 418
BssNAI	GTATAC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	73
Bst1107I	GTATAC	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	453, 654
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	440, 467, 530
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	410, 421
BstMBI	GATC	2 cut(s)	407, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstNI	CCWGG	2 cut(s)	453, 654
BstSCI	CCNGG	2 cut(s)	451, 652
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	2 cut(s)	208, 241
BstV1I	GCAGC	2 cut(s)	613, 678
BstV2I	GAAGAC	1 cut(s)	454
BstX2I	RGATCY	2 cut(s)	407, 418
BstYI	RGATCY	2 cut(s)	407, 418
BstZ17I	GTATAC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	539, 658
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	270, 517
BveI	ACCTGC	2 cut(s)	250, 514
Cac8I	GCNNGC	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	338, 538, 656
CspCI	CAANNNNNGTGG	2 cut(s)	670, 705
CviAII	CATG	1 cut(s)	212
DdeI	CTNAG	3 cut(s)	440, 467, 530
DpnI	GATC	2 cut(s)	409, 420
DpnII	GATC	2 cut(s)	407, 418
DrdI	GACNNNNNNGTC	1 cut(s)	108
DseDI	GACNNNNNNGTC	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	451, 652
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	1 cut(s)	215
FaiI	YATR	9 cut(s)	19, 105, 140, 213, 259, 391, 459, 524, 591
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	211
FauI	CCCGC	1 cut(s)	603
FblI	GTMKAC	2 cut(s)	297, 390
Fnu4HI	GCNGC	2 cut(s)	602, 667
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	602, 667
FspBI	CTAG	2 cut(s)	114, 252
GluI	GCNGC	2 cut(s)	602, 667
HaeIII	GGCC	2 cut(s)	539, 658
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	4 cut(s)	27, 34, 43, 578
Hpy166II	GTNNAC	5 cut(s)	206, 239, 298, 391, 574
Hpy188I	TCNGA	4 cut(s)	15, 468, 533, 641
Hpy188III	TCNNGA	5 cut(s)	31, 38, 57, 188, 422
Hpy8I	GTNNAC	5 cut(s)	206, 239, 298, 391, 574
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	3 cut(s)	4, 206, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
HpyF3I	CTNAG	3 cut(s)	440, 467, 530
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	407, 418
Lsp1109I	GCAGC	2 cut(s)	613, 678
MaeI	CTAG	2 cut(s)	114, 252
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	2 cut(s)	148, 579
MalI	GATC	2 cut(s)	409, 420
MboI	GATC	2 cut(s)	407, 418
MboII	GAAGA	5 cut(s)	120, 280, 459, 566, 656
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	2 cut(s)	407, 418
MhlI	GDGCHC	3 cut(s)	208, 241, 251
MluCI	AATT	9 cut(s)	288, 316, 349, 489, 546, 605, 628, 634, 682
MlyI	GAGTC	2 cut(s)	21, 587
MmeI	TCCRAC	2 cut(s)	93, 152
MnlI	CCTC	7 cut(s)	195, 219, 264, 338, 392, 424, 591
MseI	TTAA	3 cut(s)	200, 488, 594
MspR9I	CCNGG	2 cut(s)	453, 654
MunI	CAATTG	1 cut(s)	605
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	453, 654
MwoI	GCNNNNNNNGC	1 cut(s)	607
NdeII	GATC	2 cut(s)	407, 418
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	340, 420
NmuCI	GTSAC	1 cut(s)	579
PaqCI	CACCTGC	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	34, 43
PkrI	GCNGC	2 cut(s)	603, 668
PleI	GAGTC	2 cut(s)	21, 586
PpsI	GAGTC	2 cut(s)	21, 586
Psp6I	CCWGG	2 cut(s)	451, 652
PspGI	CCWGG	2 cut(s)	451, 652
PspN4I	GGNNCC	2 cut(s)	340, 420
PspPI	GGNCC	3 cut(s)	338, 538, 656
PsuI	RGATCY	2 cut(s)	407, 418
SaqAI	TTAA	3 cut(s)	200, 488, 594
SatI	GCNGC	2 cut(s)	602, 667
Sau3AI	GATC	2 cut(s)	407, 418
Sau96I	GGNCC	3 cut(s)	338, 538, 656
SchI	GAGTC	2 cut(s)	21, 587
ScrFI	CCNGG	2 cut(s)	453, 654
SduI	GDGCHC	3 cut(s)	208, 241, 251
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	9 cut(s)	288, 316, 349, 489, 546, 605, 628, 634, 682
SsiI	CCGC	1 cut(s)	610
SspMI	CTAG	2 cut(s)	114, 252
StyD4I	CCNGG	2 cut(s)	451, 652
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	3 cut(s)	90, 552, 715
TasI	AATT	9 cut(s)	288, 316, 349, 489, 546, 605, 628, 634, 682
TfiI	GAWTC	2 cut(s)	34, 43
Tru1I	TTAA	3 cut(s)	200, 488, 594
Tru9I	TTAA	3 cut(s)	200, 488, 594
TscAI	CASTG	2 cut(s)	270, 517
TseFI	GTSAC	1 cut(s)	579
TseI	GCWGC	2 cut(s)	601, 666
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	3 cut(s)	246, 474, 710
TspRI	CASTG	2 cut(s)	270, 517
VneI	GTGCAC	2 cut(s)	204, 237
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	3 cut(s)	288, 628, 634
XmiI	GTMKAC	2 cut(s)	297, 390
XspI	CTAG	2 cut(s)	114, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.