Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005436.1

Orthogroup ID

OG0004041

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1046

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005436.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 361 bp

atggcggttaatgaagctttgcagggtgtgagcaatttgttggggagtgttctgatgaatgatgagggaaaacagctgctggagctgaatcgctgttcatgggatgggaataagggggttaaggaagaggaacaggggttagttaagggagatgatttgaaaagtaatgggagagctgaagatgtgaaagttggcaatggaggggttggtcaaccccagtttgttatacaacagcctcagggttcaactgtttgctgggagaggtttctacatctgagatctctgaaggttttgctggtggaatatgatgattgtactcgccatattgttgctgcacttcttcgcaattgcagttatgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

120

Amino Acids

13.26

Weight (kDa)

5.19

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02810 AT5G02810
fragaria_vesca	FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060
malus_domestica	MD04G1113200.v1.1 MD12G1128600.v1.1
prunus_persica	Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1
pyrus_communis	pycom04g10210 pycom12g12520
rosa_chinensis	RchiOBHm_Chr3g0468241
rosa_laevigata	RLG00000024439
rosa_multiflora	Rmu_sc0004524.1_g000003 Rmu_sc0005436.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412880
rosa_rugosa	Rorug03G0094600 Rorug03G0094600 Rorug03G0094700
rosa_samantha	Rh3AG142100 Rh3BG163600 Rh3DG164300
rosa_wichuraiana	Rw3G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	198, 305
AfaI	GTAC	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	160, 246
AluBI	AGCT	4 cut(s)	17, 76, 85, 176
AluI	AGCT	4 cut(s)	17, 76, 85, 176
AlwNI	CAGNNNCTG	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	76, 332
AxyI	CCTNAGG	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	63, 319
BccI	CCATC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	2 cut(s)	77, 333
BlsI	GCNGC	2 cut(s)	78, 334
BmrI	ACTGGG	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	251, 266
BseNI	ACTGG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	63, 319
BseYI	CCCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	278
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	250, 267
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	237, 275
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	63, 319
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	5 cut(s)	17, 76, 85, 176, 235
CviKI_1	RGCY	5 cut(s)	17, 76, 85, 176, 235
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	2 cut(s)	237, 275
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco57I	CTGAAG	2 cut(s)	198, 305
Eco81I	CCTNAGG	1 cut(s)	237
FaeI	CATG	1 cut(s)	102
FaiI	YATR	5 cut(s)	100, 227, 306, 324, 357
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	77, 333
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	77, 333
GluI	GCNGC	2 cut(s)	77, 333
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	101
Hin1II	CATG	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	212
HindII	GTYRAC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	54, 276, 285
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	22, 335, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	237, 275
Hsp92II	CATG	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	7 cut(s)	8, 65, 119, 224, 230, 241, 281
Lsp1109I	GCAGC	2 cut(s)	63, 319
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	3 cut(s)	137, 191, 332
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	1 cut(s)	278
MluCI	AATT	2 cut(s)	34, 346
MnlI	CCTC	5 cut(s)	58, 121, 194, 246, 255
MseI	TTAA	3 cut(s)	9, 120, 144
MspA1I	CMGCKG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	78, 334
PspFI	CCCAGC	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	9, 120, 144
SatI	GCNGC	2 cut(s)	77, 333
Sau3AI	GATC	1 cut(s)	278
SetI	ASST	6 cut(s)	19, 78, 87, 178, 266, 291
SgeI	CNNG	9 cut(s)	35, 92, 111, 146, 229, 251, 268, 308, 330
Sse9I	AATT	2 cut(s)	34, 346
SsiI	CCGC	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	250
TasI	AATT	2 cut(s)	34, 346
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	9, 120, 144
Tru9I	TTAA	3 cut(s)	9, 120, 144
TseI	GCWGC	2 cut(s)	76, 332
TspDTI	ATGAA	3 cut(s)	27, 71, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.