Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004041

Physical Location & Seq

Genomic Coordinates Forward (+)

14960216 .. 14964266

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGAATTTGCTGTCGGCATCACTCTGTAACCGTGTCCTGATGAGTGTTAATAGTGATGAGGACAAACAACTGTTGGAACTGGACCACCGCTCATGGGAGGGTGAGGGGAAGAGGGGTAACAATGGAGTGGAGGATGAGGAAAGGAGGTTGGTGGAGGAAGATGAGTCGAAAAGTAATGGAAGAGCTGGAGATGTAAAAGGTCGGCAAGGAGGGGCTGTTCAAGCCCAGACTGTTACACAACAGCCTCAAGGGTCAACGGTATGCTGGGAGAGGTTTCTACCACTAAGATCTCTTAAGGTTTTGCTGGTGGAATATGATGATTGCACTCGCCATGTTGTCACCGCACTGCTTCGCAATTGCAGTTATGAAGTGATTCCAGTAGCAAATGGAGTGCAAGCATGGAAGATTCTTGAAGATTTGACTAATCATGTTGATCTAGTCTTAACTGAGGTAGTCATGCCATGCGTATCAGGCGTTGGTCTTTTAAGCAAGATTATGCGCCATAAGACGCGGAAAAATGTTCCTGTGATTATGATGTCATCTCATGATTCAATGGGTCTCGTCTTTAAATGTTTGTCAAGGGGTGCTGTTGACTTTTTGGTGAAGCCTATTCGAAAGAATGAGCTTAAGAACCTCTGGCAGCACATTTGGAGGAGATGCCATAGTTCTAGTGGCAGTGGTACTGGAAGTGAAAGTGGCACACAAACTCAAAGGTCCATAAGATCAAAAAGTGTTGAAAAGTCCAGGAACAATAGTGGAAGCAATGATGAGGAAGATAATGTGAGCACTGATTTGAATATTGGAGATGGAAGTGACGATGGGAGTGGCACTCAGAGTTCTTGGACAAAAAAGGCTGTAGAAGTTGACAGTCCTCGACATGCATATTCATGGCCCCATCCTGATAGTACTTGTGCCCAAGTAGTTCACTCAAATGCTGAATCACTTGGTAACAAATTGCTTCCTGTAGCTGCAACTAGGGAGTGCCAGCAACAGAAGGAACAAAATGACAACTTTGCAATGGGAAAAGATCTGGAGATATGCCTGACCAGTACTAAAGATTTACAGCATGGGCAACGTAATGATTTTTCAACAAAACTAGCAGGAACAAGACAGAATAATCTGCTTGAGACAGGTTCCTGTAAACGTGATGAGAAAATTGATAAGGGCAAGCTGAATTTGAATTGTGAGAGTCCTTCGAGCATGCTGAAGTATGATGGTGCTACTGTAACAGGTGTTGTTACTAATCCCACTGATTCCCAGATGGACAACACACAATTTGAAGCTTCTAACAGACATTATAACGCCTTAGATGTTAACAATAAGGCGAATAGTGATACTCATGAACTACCATCCGTGGAGCCCAGTTTGAAAAGGCTTAGAGGAGTCAAAGGCACCGAGACAACAGTACAAGATGACCGCAATGTATGGAGACGTTCAGACTCTTCAGCCTTTTCAAGGTATAACGCAGCCTCAAATGCTAACAAGGGTCCTTCTGGGCATGTCGGAAGCAACTCTCCGCATGATAATAGTGGAGAAGTTACAAAAATGGAATTCTTTTGTGACATTCGATCTCATTCAAGAGATAACCTTCCCAATCAATGCTCGATCGGAGGCAGAAATATCAACGATATGGGGTCCACTACTAATAACGACGTTCCGAAATCTCAAGTTGCAAACAAGTCAGCAGCAGCAGCATCCACAGTCCAACTTTTGCATCCATCATCTGCTTTCCATCCTGTGAAGGACCTTAAGAGTGCTACCGAACATGTTGTAGTAGATAATGCTAATGATGTGGAAACAGCAATACGAGTTCAATCAAGAGACACCCAGAAGCAACTGCAAATTCAGAACCTCCATCATGATTATGATCAGCATCGGGTCCATCACCATGTTGTCTACAATATGCAAGAGCAACAGCTTCATAATAATAATGATTCATCTTTGAAGAAATTGGCTGCAGCTGCCCCACATTGCGGATCATCCAATGGGACTGGGCCTGTTGAGGGCAATCCTGGAAATTACAGCATCAATGGGAGTGGTTCAGGCAGTAACCATGGGAGCAATGGGCAAAACGGAGGCAGTGGTGGACATAATGTTGGAGGTACAAACCTAGAAAGTGATTATGGAGTTGCTGGGAAAAGTGGAAGTGGTGATGGTAGCGGAAACCAGAGTGGAAATAGAGTAGATGAAAACAAGAAGCAGAGAGAAGCTGCCTTGACCAAGTTCCGTGAGAAAAGAAAAGAGAGATGCTTCCGGAAAAAGGTTCGGTATCAAAACAGAAAGAAACTGGCAGATCAACGGCCTCGCATTCGAGGACAGTTTGTGCGGCATACAGTGAGCGAGAACACGAGCAGGACAACAGATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

790

Amino Acids

86.68

Weight (kDa)

8.34

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02810 AT5G02810
fragaria_vesca	FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060
malus_domestica	MD04G1113200.v1.1 MD12G1128600.v1.1
prunus_persica	Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1
pyrus_communis	pycom04g10210 pycom12g12520
rosa_chinensis	RchiOBHm_Chr3g0468241
rosa_laevigata	RLG00000024439
rosa_multiflora	Rmu_sc0004524.1_g000003 Rmu_sc0005436.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412880
rosa_rugosa	Rorug03G0094600 Rorug03G0094600 Rorug03G0094700
rosa_samantha	Rh3AG142100 Rh3BG163600 Rh3DG164300
rosa_wichuraiana	Rw3G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1299
AccB1I	GGYRCC	1 cut(s)	1391
AccBSI	CCGCTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	1896
AccII	CGCG	1 cut(s)	511
AccIII	TCCGGA	1 cut(s)	2253
AciI	CCGC	8 cut(s)	88, 342, 511, 1417, 1517, 1974, 2160, 2326
AclWI	GGATC	1 cut(s)	1984
AcsI	RAATTY	4 cut(s)	4, 1174, 1550, 1842
AcuI	CTGAAG	2 cut(s)	1226, 1428
AfaI	GTAC	5 cut(s)	682, 907, 1051, 1407, 2104
AfiI	CCNNNNNNNGG	5 cut(s)	94, 1455, 1973, 2003, 2260
AflII	CTTAAG	3 cut(s)	293, 626, 1748
AflIII	ACRYGT	1 cut(s)	1765
AjnI	CCWGG	2 cut(s)	743, 2011
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	8 cut(s)	185, 625, 968, 1171, 1283, 1918, 1961, 2210
AluI	AGCT	8 cut(s)	185, 625, 968, 1171, 1283, 1918, 1961, 2210
Alw21I	GWGCWC	1 cut(s)	788
Alw26I	GTCTC	5 cut(s)	563, 1121, 1391, 1423, 1815
AlwI	GGATC	1 cut(s)	1984
Aor13HI	TCCGGA	1 cut(s)	2253
AoxI	GGCC	3 cut(s)	890, 1994, 2300
ApoI	RAATTY	4 cut(s)	4, 1174, 1550, 1842
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	8 cut(s)	82, 714, 891, 1487, 1635, 1744, 1879, 1994
AsuHPI	GGTGA	5 cut(s)	113, 331, 613, 1877, 2162
AsuII	TTCGAA	1 cut(s)	613
AvaII	GGWCC	6 cut(s)	82, 714, 1487, 1635, 1744, 1879
BaeGI	GKGCMC	1 cut(s)	916
BanI	GGYRCC	1 cut(s)	1391
BanII	GRGCYC	1 cut(s)	1362
BauI	CACGAG	1 cut(s)	2347
Bbv12I	GWGCWC	1 cut(s)	788
BceAI	ACGGC	1 cut(s)	2315
BciT130I	CCWGG	2 cut(s)	745, 2013
BclI	TGATCA	1 cut(s)	1867
BcoDI	GTCTC	5 cut(s)	563, 1121, 1391, 1423, 1815
BfaI	CTAG	5 cut(s)	437, 669, 975, 1097, 2111
BfmI	CTRYAG	3 cut(s)	855, 963, 1956
BfrI	CTTAAG	3 cut(s)	293, 626, 1748
BglII	AGATCT	2 cut(s)	287, 1027
BmcAI	AGTACT	2 cut(s)	907, 1051
Bme1390I	CCNGG	2 cut(s)	745, 2013
Bme18I	GGWCC	6 cut(s)	82, 714, 1487, 1635, 1744, 1879
BmgT120I	GGNCC	8 cut(s)	82, 714, 891, 1487, 1635, 1744, 1879, 1994
BmiI	GGNNCC	7 cut(s)	893, 1135, 1359, 1393, 1488, 1636, 1880
BmrFI	CCNGG	2 cut(s)	745, 2013
BmrI	ACTGGG	2 cut(s)	1356, 2001
BmsI	GCATC	7 cut(s)	26, 647, 1703, 1723, 1882, 2034, 2237
BmuI	ACTGGG	2 cut(s)	1356, 2001
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpmI	CTGGAG	2 cut(s)	207, 1052
Bpu14I	TTCGAA	1 cut(s)	613
BpuEI	CTTGAG	3 cut(s)	231, 1145, 1650
BsaBI	GATNNNNATC	2 cut(s)	1866, 1872
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	1353, 2053
BsaWI	WCCGGW	1 cut(s)	2253
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 1455, 1973, 2003, 2260
Bse1I	ACTGG	7 cut(s)	84, 377, 688, 1047, 1362, 1996, 2292
Bse3DI	GCAATG	5 cut(s)	769, 1023, 1426, 1969, 2068
Bse8I	GATNNNNATC	2 cut(s)	1866, 1872
BseAI	TCCGGA	1 cut(s)	2253
BseBI	CCWGG	2 cut(s)	745, 2013
BseDI	CCNNGG	2 cut(s)	1353, 2053
BseGI	GGATG	7 cut(s)	139, 895, 1349, 1694, 1714, 1732, 1979
BseJI	GATNNNNATC	2 cut(s)	1866, 1872
BseLI	CCNNNNNNNGG	5 cut(s)	94, 1455, 1973, 2003, 2260
BseMI	GCAATG	5 cut(s)	769, 1023, 1426, 1969, 2068
BseMII	CTCAG	2 cut(s)	438, 845
BseNI	ACTGG	7 cut(s)	84, 377, 688, 1047, 1362, 1996, 2292
BseRI	GAGGAG	2 cut(s)	667, 1395
BseSI	GKGCMC	1 cut(s)	916
BseYI	CCCAGC	2 cut(s)	264, 2132
Bsh1236I	CGCG	1 cut(s)	511
Bsh1285I	CGRYCG	1 cut(s)	1608
BshFI	GGCC	3 cut(s)	892, 1996, 2302
BshNI	GGYRCC	1 cut(s)	1391
BsiEI	CGRYCG	1 cut(s)	1608
BsiHKAI	GWGCWC	1 cut(s)	788
BsiSI	CCGG	1 cut(s)	2254
BslFI	GGGAC	1 cut(s)	2002
BslI	CCNNNNNNNGG	5 cut(s)	94, 1455, 1973, 2003, 2260
BsmAI	GTCTC	5 cut(s)	563, 1121, 1391, 1423, 1815
BsmBI	CGTCTC	1 cut(s)	1423
BsmFI	GGGAC	1 cut(s)	2002
BsmI	GAATGC	1 cut(s)	2307
BsnI	GGCC	3 cut(s)	892, 1996, 2302
Bso31I	GGTCTC	1 cut(s)	563
Bsp119I	TTCGAA	1 cut(s)	613
Bsp1286I	GDGCHC	3 cut(s)	788, 916, 1362
Bsp13I	TCCGGA	1 cut(s)	2253
Bsp143I	GATC	9 cut(s)	287, 433, 722, 1027, 1568, 1605, 1867, 1976, 2293
Bsp19I	CCATGG	1 cut(s)	2053
BspACI	CCGC	8 cut(s)	88, 342, 511, 1417, 1517, 1974, 2160, 2326
BspANI	GGCC	3 cut(s)	892, 1996, 2302
BspCNI	CTCAG	2 cut(s)	439, 844
BspEI	TCCGGA	1 cut(s)	2253
BspFNI	CGCG	1 cut(s)	511
BspHI	TCATGA	3 cut(s)	544, 1339, 1858
BspLI	GGNNCC	7 cut(s)	893, 1135, 1359, 1393, 1488, 1636, 1880
BspMAI	CTGCAG	1 cut(s)	1960
BspPI	GGATC	1 cut(s)	1984
BspQI	GCTCTTC	1 cut(s)	175
BspT104I	TTCGAA	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	1391
BspTI	CTTAAG	3 cut(s)	293, 626, 1748
BspTNI	GGTCTC	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	5 cut(s)	769, 1023, 1426, 1969, 2068
BsrI	ACTGG	7 cut(s)	84, 377, 688, 1047, 1362, 1996, 2292
BssECI	CCNNGG	2 cut(s)	1353, 2053
BssMI	GATC	9 cut(s)	287, 433, 722, 1027, 1568, 1605, 1867, 1976, 2293
BssSI	CACGAG	1 cut(s)	2347
BssT1I	CCWWGG	1 cut(s)	2053
Bst2BI	CACGAG	1 cut(s)	2347
Bst2UI	CCWGG	2 cut(s)	745, 2013
Bst6I	CTCTTC	3 cut(s)	104, 175, 1447
BstAFI	CTTAAG	3 cut(s)	293, 626, 1748
BstBI	TTCGAA	1 cut(s)	613
BstC8I	GCNNGC	4 cut(s)	396, 986, 1169, 1202
BstDEI	CTNAG	5 cut(s)	284, 447, 831, 1306, 1376
BstDSI	CCRYGG	2 cut(s)	1353, 2053
BstENI	CCTNNNNNAGG	1 cut(s)	1453
BstF5I	GGATG	7 cut(s)	139, 895, 1349, 1694, 1714, 1732, 1979
BstFNI	CGCG	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	9 cut(s)	290, 436, 725, 1030, 1571, 1608, 1870, 1979, 2296
BstMAI	GTCTC	5 cut(s)	563, 1121, 1391, 1423, 1815
BstMBI	GATC	9 cut(s)	287, 433, 722, 1027, 1568, 1605, 1867, 1976, 2293
BstMCI	CGRYCG	1 cut(s)	1608
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 471, 1475, 1691, 1961
BstNI	CCWGG	2 cut(s)	745, 2013
BstNSI	RCATGY	4 cut(s)	881, 1204, 1502, 1769
BstSCI	CCNGG	2 cut(s)	743, 2011
BstSFI	CTRYAG	3 cut(s)	855, 963, 1956
BstSLI	GKGCMC	1 cut(s)	916
BstUI	CGCG	1 cut(s)	511
BstX2I	RGATCY	2 cut(s)	287, 1027
BstYI	RGATCY	2 cut(s)	287, 1027
BsuRI	GGCC	3 cut(s)	892, 1996, 2302
BtgI	CCRYGG	2 cut(s)	1353, 2053
BtsCI	GGATG	7 cut(s)	139, 895, 1349, 1694, 1714, 1732, 1979
BtsI	GCAGTG	3 cut(s)	344, 682, 2086
BtsIMutI	CAGTG	6 cut(s)	344, 682, 786, 1248, 2086, 2340
Cac8I	GCNNGC	4 cut(s)	396, 986, 1169, 1202
CciI	TCATGA	3 cut(s)	544, 1339, 1858
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	8 cut(s)	82, 714, 891, 1487, 1635, 1744, 1879, 1994
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	5 cut(s)	681, 906, 1050, 1406, 2103
CspCI	CAANNNNNGTGG	2 cut(s)	2017, 2052
CviQI	GTAC	5 cut(s)	681, 906, 1050, 1406, 2103
DdeI	CTNAG	5 cut(s)	284, 447, 831, 1306, 1376
DpnI	GATC	9 cut(s)	289, 435, 724, 1029, 1570, 1607, 1869, 1978, 2295
DpnII	GATC	9 cut(s)	287, 433, 722, 1027, 1568, 1605, 1867, 1976, 2293
DraI	TTTAAA	1 cut(s)	568
Eam1104I	CTCTTC	3 cut(s)	104, 175, 1447
EarI	CTCTTC	3 cut(s)	104, 175, 1447
Eco130I	CCWWGG	1 cut(s)	2053
Eco24I	GRGCYC	1 cut(s)	1362
Eco31I	GGTCTC	1 cut(s)	563
Eco32I	GATATC	1 cut(s)	2365
Eco47I	GGWCC	6 cut(s)	82, 714, 1487, 1635, 1744, 1879
Eco57I	CTGAAG	2 cut(s)	1226, 1428
EcoNI	CCTNNNNNAGG	1 cut(s)	1453
EcoO109I	RGGNCCY	2 cut(s)	1487, 1744
EcoRI	GAATTC	1 cut(s)	1550
EcoRII	CCWGG	2 cut(s)	743, 2011
EcoRV	GATATC	1 cut(s)	2365
EcoT14I	CCWWGG	1 cut(s)	2053
EcoT22I	ATGCAT	1 cut(s)	883
EcoT38I	GRGCYC	1 cut(s)	1362
ErhI	CCWWGG	1 cut(s)	2053
Esp3I	CGTCTC	1 cut(s)	1423
FaqI	GGGAC	1 cut(s)	2002
FbaI	TGATCA	1 cut(s)	1867
FblI	GTMKAC	1 cut(s)	1896
FokI	GGATG	7 cut(s)	146, 882, 1336, 1681, 1701, 1719, 1966
FriOI	GRGCYC	1 cut(s)	1362
FspBI	CTAG	5 cut(s)	437, 669, 975, 1097, 2111
GlaI	GCGC	1 cut(s)	500
GsaI	CCCAGC	2 cut(s)	268, 2136
GsuI	CTGGAG	2 cut(s)	207, 1052
HaeIII	GGCC	3 cut(s)	892, 1996, 2302
HapII	CCGG	1 cut(s)	2254
HgaI	GACGC	1 cut(s)	517
HhaI	GCGC	1 cut(s)	501
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HincII	GTYRAC	4 cut(s)	255, 592, 865, 1315
HindII	GTYRAC	4 cut(s)	255, 592, 865, 1315
HindIII	AAGCTT	1 cut(s)	1281
HpaI	GTTAAC	1 cut(s)	1315
HpaII	CCGG	1 cut(s)	2254
HphI	GGTGA	5 cut(s)	113, 331, 613, 1877, 2162
Hpy166II	GTNNAC	9 cut(s)	255, 592, 865, 925, 1142, 1315, 1638, 1897, 2087
Hpy188I	TCNGA	6 cut(s)	834, 1438, 1505, 1610, 1659, 1848
Hpy8I	GTNNAC	9 cut(s)	255, 592, 865, 925, 1142, 1315, 1638, 1897, 2087
Hpy99I	CGWCG	1 cut(s)	1655
HpyAV	CCTTC	5 cut(s)	988, 1203, 1500, 1598, 1735
HpyCH4IV	ACGT	4 cut(s)	1075, 1144, 1432, 1653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 471, 1475, 1691, 1961
HpyF3I	CTNAG	5 cut(s)	284, 447, 831, 1306, 1376
HpySE526I	ACGT	4 cut(s)	1075, 1144, 1432, 1653
HspAI	GCGC	1 cut(s)	499
Kpn2I	TCCGGA	1 cut(s)	2253
Ksp22I	TGATCA	1 cut(s)	1867
KspAI	GTTAAC	1 cut(s)	1315
Kzo9I	GATC	9 cut(s)	287, 433, 722, 1027, 1568, 1605, 1867, 1976, 2293
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	2 cut(s)	1357, 2058
LweI	GCATC	7 cut(s)	26, 647, 1703, 1723, 1882, 2034, 2237
MaeI	CTAG	5 cut(s)	437, 669, 975, 1097, 2111
MaeII	ACGT	4 cut(s)	1075, 1144, 1432, 1653
MalI	GATC	9 cut(s)	289, 435, 724, 1029, 1570, 1607, 1869, 1978, 2295
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	9 cut(s)	287, 433, 722, 1027, 1568, 1605, 1867, 1976, 2293
MboII	GAAGA	8 cut(s)	121, 170, 192, 415, 425, 785, 1434, 1957
MfeI	CAATTG	1 cut(s)	355
MflI	RGATCY	2 cut(s)	287, 1027
MhlI	GDGCHC	3 cut(s)	788, 916, 1362
MlyI	GAGTC	4 cut(s)	173, 1198, 1392, 1433
MmeI	TCCRAC	4 cut(s)	54, 1483, 1729, 2077
Mph1103I	ATGCAT	1 cut(s)	883
MroI	TCCGGA	1 cut(s)	2253
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	8 cut(s)	48, 294, 443, 485, 567, 627, 1314, 1749
MslI	CAYNNNNRTG	4 cut(s)	886, 930, 1863, 1887
MspA1I	CMGCKG	1 cut(s)	1961
MspCI	CTTAAG	3 cut(s)	293, 626, 1748
MspI	CCGG	1 cut(s)	2254
MspR9I	CCNGG	2 cut(s)	745, 2013
MunI	CAATTG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	2307
MvaI	CCWGG	2 cut(s)	745, 2013
MvnI	CGCG	1 cut(s)	511
MwoI	GCNNNNNNNGC	5 cut(s)	221, 471, 1475, 1691, 1961
NcoI	CCATGG	1 cut(s)	2053
NdeII	GATC	9 cut(s)	287, 433, 722, 1027, 1568, 1605, 1867, 1976, 2293
NlaIV	GGNNCC	7 cut(s)	893, 1135, 1359, 1393, 1488, 1636, 1880
NmuCI	GTSAC	3 cut(s)	337, 812, 1559
NsiI	ATGCAT	1 cut(s)	883
NspI	RCATGY	4 cut(s)	881, 1204, 1502, 1769
NspV	TTCGAA	1 cut(s)	613
PaeI	GCATGC	1 cut(s)	1204
PagI	TCATGA	3 cut(s)	544, 1339, 1858
PciI	ACATGT	1 cut(s)	1765
PciSI	GCTCTTC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	2307
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	6 cut(s)	373, 406, 548, 938, 1253, 1934
PfoI	TCCNGGA	2 cut(s)	743, 2011
Ple19I	CGATCG	1 cut(s)	1608
PleI	GAGTC	4 cut(s)	172, 1197, 1391, 1433
PpsI	GAGTC	4 cut(s)	172, 1197, 1391, 1433
PpuMI	RGGWCCY	2 cut(s)	1487, 1744
PscI	ACATGT	1 cut(s)	1765
PsiI	TTATAA	1 cut(s)	1299
Psp5II	RGGWCCY	2 cut(s)	1487, 1744
Psp6I	CCWGG	2 cut(s)	743, 2011
PspFI	CCCAGC	2 cut(s)	264, 2132
PspGI	CCWGG	2 cut(s)	743, 2011
PspN4I	GGNNCC	7 cut(s)	893, 1135, 1359, 1393, 1488, 1636, 1880
PspPI	GGNCC	8 cut(s)	82, 714, 891, 1487, 1635, 1744, 1879, 1994
PspPPI	RGGWCCY	2 cut(s)	1487, 1744
PstI	CTGCAG	1 cut(s)	1960
PsuI	RGATCY	2 cut(s)	287, 1027
PvuI	CGATCG	1 cut(s)	1608
PvuII	CAGCTG	1 cut(s)	1961
RsaI	GTAC	5 cut(s)	682, 907, 1051, 1407, 2104
RsaNI	GTAC	5 cut(s)	681, 906, 1050, 1406, 2103
RseI	CAYNNNNRTG	4 cut(s)	886, 930, 1863, 1887
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	8 cut(s)	48, 294, 443, 485, 567, 627, 1314, 1749
Sau3AI	GATC	9 cut(s)	287, 433, 722, 1027, 1568, 1605, 1867, 1976, 2293
Sau96I	GGNCC	8 cut(s)	82, 714, 891, 1487, 1635, 1744, 1879, 1994
ScaI	AGTACT	2 cut(s)	907, 1051
SchI	GAGTC	4 cut(s)	173, 1198, 1392, 1433
ScrFI	CCNGG	2 cut(s)	745, 2013
SduI	GDGCHC	3 cut(s)	788, 916, 1362
SfaNI	GCATC	7 cut(s)	26, 647, 1703, 1723, 1882, 2034, 2237
SfcI	CTRYAG	3 cut(s)	855, 963, 1956
SfuI	TTCGAA	1 cut(s)	613
SinI	GGWCC	6 cut(s)	82, 714, 1487, 1635, 1744, 1879
SmiMI	CAYNNNNRTG	4 cut(s)	886, 930, 1863, 1887
SmlI	CTYRAG	6 cut(s)	246, 293, 626, 1124, 1665, 1748
SmoI	CTYRAG	6 cut(s)	246, 293, 626, 1124, 1665, 1748
SphI	GCATGC	1 cut(s)	1204
SsiI	CCGC	8 cut(s)	88, 342, 511, 1417, 1517, 1974, 2160, 2326
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	5 cut(s)	437, 669, 975, 1097, 2111
StyD4I	CCNGG	2 cut(s)	743, 2011
StyI	CCWWGG	1 cut(s)	2053
TaiI	ACGT	4 cut(s)	1078, 1147, 1435, 1656
TaqI	TCGA	7 cut(s)	167, 613, 874, 1196, 1567, 1604, 2311
TatI	WGTACW	3 cut(s)	905, 1049, 1405
TauI	GCSGC	1 cut(s)	2329
TfiI	GAWTC	6 cut(s)	373, 406, 548, 938, 1253, 1934
Tru1I	TTAA	8 cut(s)	48, 294, 443, 485, 567, 627, 1314, 1749
Tru9I	TTAA	8 cut(s)	48, 294, 443, 485, 567, 627, 1314, 1749
TscAI	CASTG	6 cut(s)	351, 682, 793, 1255, 2086, 2340
TseFI	GTSAC	3 cut(s)	337, 812, 1559
Tsp45I	GTSAC	3 cut(s)	337, 812, 1559
TspDTI	ATGAA	7 cut(s)	17, 381, 876, 1356, 1910, 1926, 2202
TspGWI	ACGGA	3 cut(s)	1342, 2088, 2216
TspRI	CASTG	6 cut(s)	351, 682, 793, 1255, 2086, 2340
Vha464I	CTTAAG	3 cut(s)	293, 626, 1748
VpaK11BI	GGWCC	6 cut(s)	82, 714, 1487, 1635, 1744, 1879
XagI	CCTNNNNNAGG	1 cut(s)	1453
XapI	RAATTY	4 cut(s)	4, 1174, 1550, 1842
XceI	RCATGY	4 cut(s)	881, 1204, 1502, 1769
XcmI	CCANNNNNNNNNTGG	2 cut(s)	668, 2060
XmiI	GTMKAC	1 cut(s)	1896
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	5 cut(s)	437, 669, 975, 1097, 2111
ZrmI	AGTACT	2 cut(s)	907, 1051
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.