Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004041

Physical Location & Seq

Genomic Coordinates Reverse (-)

19881796 .. 19887358

Gene Structure 5563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1113200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2325 bp

ATGAATGTTAATAGTGACGAGGACAGACAACTGTCGGAACTAAACCACCGCTCATGGGAGGGCGAGGGGGAGAGGGGTAACAATGGAGTGGAGGATGAGGAAAGGAGGTTAGTCGAGGAAGATGAGTCGAAAAGTAATGGAAGAGCTGGAGATGTAAAAGGCCGGCTAGGTGGGGCTGTTCAAACCCAGACTGTTACTCAACAGCCTCAAGGGTCGACGGTTTGCTGGGAGAGGTTTCTACATGTAAGATCTCTTAAAGTTTTGCTGGTGGAATATGATGATTCTACTCGCCATGTTGTCACCGCACTGCTTCGCAATTGCAGTTATGAAGTGATTCCAGTAGCAAATGGAGTGCAAGCATGGAAGATTCTTGAAGATTTGACTAATCATGTTGATCTAGTCTTAACTGAGGTAGTCATGCCGTGTGTATCAGGCGTTAGCCTTTTAAGCAAGATTATGAGCCATAAGACACGGAAAAATGTTCCTGTGATCATGATGTCATCTCATGATTCAATGGGCCTCGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTTTAGTGAAGCCTATTCGAAAGAATGAGCTTAAGAACCTCTGGCAGCACATTTGGAGGAGATGCCATAGTTCTAGTGGTAGTGGAACGGGAAGTGAAAGTGGCAATCAAACCCAAAGGTCTATAAGATCAAAAAGTGTTGAAAAGTCTGAGAACAATAGCGGAAGCAAGGATGAGGAAGATACTGATTTGAATGTTGGAGATGGTAGTGACAATGGGAGTGGCACTCAGAGTTCTTGGACAAAAAGAGCTGTAGAAGTTGACAGTCCGCGACATGCGTATTCATGGCCCCATCCTGATAGTACTTGTGCCCAAGTAGTTCACTCAAATGCTGAATCACTTGGTAACAAATTGGTTCCTGCAGCTGCGACAAGGGAGTGCCAGCAACAGAAGGAACAAAATGACAACTTTGCAATGGGAAAAGATCTGGAGACAGGCCTGACCAATATTGAAGAATTACAGCATGGGCAGTGTAATGATTTTTCAACAAAACTAGCAGGAGCAAGACAGAATAATCTGCTTGAGACAGGTTCCAGTAAACTTGACGAGAAAATTGATAAGGGAAAGCTGAACTTGAAACGTGAGAGTCCTTCCAGCATGCTGAAGTATGATGGTGCTACAATAACAGGTGTTGTAACTAATCCCACTGATTCCCAGATGGACAACACACAATTTGAAGCTTCTAACAGACATTATTACGCCTTAGACGTTAACAATAAGGCGCATAGTAATGTTCATGAAATTTCATCCGTGGAGCTCAGTTTGAAAAGGCTTAGAGGAGTTAAAGGCACTGAGACAACAGTACAAGATGACCGCAATGTCTTGAGACGGTCAGACTCTTCAGCCTTTTCAAGGTATAACACAGCCTCAAATGCTAACAAGGGTCCTTCTGGGCATGTTGGAAGCAACTCTCCACATGATAATAGTGGAGAAGTTACGAAAAAGGAATTCTTTCGCGGCATTCGATCTCATTCAAGAGATAACCCTCCCAATCAATGCTTGAAAGGAGGCAGCAATATCAATGATATGGGATCCACTACTAATAATGCCCTTCCGAAATCTCAAGTTGCAAACAAGTCAGAAGCAGCATCCACGGTCCAACTTTTGCATCCATCATCTGCTTTCCATCCTGTGAAGGACCTTAAGAGTGCTACCGAACATGTTATAAAAGATAATTCTAGCAATGTGGAAACAACAGTACGGGTTCAATCAAGAGACACCCAGAAGCAACACCAAATCCAGAACCGCCATCATGATTATGATCAGCATCGGGTCCATCACCATGTTGTCCACAATATGCAAGAGCCACAGCTGCGTGACAATAATGATTTATCTTTGAAGAAATTGGCTGCAGCTGCCCCACATTGTGGATCATCGAATGCCCTAACTGGGCCTGTTGAAGGTAACCCTGGAAATTATAGCATCAATGGGAGTGGTTCAGGTAGTAACCATGGGAGCAATGGGCAAAACGGAGGCAGCGGTGGACATAATGTTGGAGGTACAAAGCTAGAAAGTGATTATGGAGTTGCTGGGAAAAGTGGAAGTGGTGACGGTAGCGGAAACCAGAGTGGAAATAGAGTAGATGAAAACATGTTCAAGCAGAGAGAAGCTGCCTTGACCAAGTTCCGTCAGAAAAGAAAAGAGAGATGCTTCCGAAAAAAGGTTCGGTATCAAAACAGAAAGAAACTGGCAGATCAACGACCTCGAATTCGAGGACAGTTTGTGCGGCATACAATGAGCGAGAACACGAGCAGGACAACAGATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

775

Amino Acids

85.19

Weight (kDa)

8.73

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	87 - 198	4.3e-20	Response regulator receiver domain
CCT	PF06203	720 - 761	3.8e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02810 AT5G02810
fragaria_vesca	FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060
malus_domestica	MD04G1113200.v1.1 MD12G1128600.v1.1
prunus_persica	Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1
pyrus_communis	pycom04g10210 pycom12g12520
rosa_chinensis	RchiOBHm_Chr3g0468241
rosa_laevigata	RLG00000024439
rosa_multiflora	Rmu_sc0004524.1_g000003 Rmu_sc0005436.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412880
rosa_rugosa	Rorug03G0094600 Rorug03G0094600 Rorug03G0094700
rosa_samantha	Rh3AG142100 Rh3BG163600 Rh3DG164300
rosa_wichuraiana	Rw3G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1721
AasI	GACNNNNNNGTC	1 cut(s)	1373
AccB7I	CCANNNNNTGG	1 cut(s)	1922
AccBSI	CCGCTC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	215
AccII	CGCG	2 cut(s)	826, 1512
AclWI	GGATC	3 cut(s)	1581, 1594, 1933
AcsI	RAATTY	3 cut(s)	1296, 1502, 2262
AcuI	CTGAAG	2 cut(s)	1178, 1380
AdeI	CACNNNGTG	1 cut(s)	1922
AfaI	GTAC	4 cut(s)	859, 1359, 1755, 2056
AfiI	CCNNNNNNNGG	6 cut(s)	55, 1407, 1922, 1944, 1955, 2215
AflII	CTTAAG	2 cut(s)	587, 1697
AflIII	ACRYGT	3 cut(s)	241, 1714, 2145
AjnI	CCWGG	1 cut(s)	1963
Alw21I	GWGCWC	1 cut(s)	1314
Alw26I	GTCTC	5 cut(s)	980, 1073, 1343, 1375, 1764
AlwI	GGATC	3 cut(s)	1581, 1594, 1933
AoxI	GGCC	5 cut(s)	160, 517, 842, 991, 1946
ApoI	RAATTY	3 cut(s)	1296, 1502, 2262
ArsI	GACNNNNNNTTYG	2 cut(s)	2247, 2279
Asp700I	GAANNNNTTC	2 cut(s)	333, 1506
AspLEI	GCGC	1 cut(s)	1279
AspS9I	GGNCC	7 cut(s)	517, 843, 1439, 1651, 1693, 1828, 1946
AsuHPI	GGTGA	3 cut(s)	292, 1826, 2114
AsuII	TTCGAA	1 cut(s)	574
AvaII	GGWCC	4 cut(s)	1439, 1651, 1693, 1828
BaeGI	GKGCMC	1 cut(s)	868
BamHI	GGATCC	1 cut(s)	1586
BanII	GRGCYC	1 cut(s)	1314
BauI	CACGAG	1 cut(s)	2302
Bbv12I	GWGCWC	1 cut(s)	1314
BccI	CCATC	8 cut(s)	752, 855, 1160, 1207, 1675, 1689, 1812, 1839
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	1965
BclI	TGATCA	2 cut(s)	489, 1816
BcoDI	GTCTC	5 cut(s)	980, 1073, 1343, 1375, 1764
BfaI	CTAG	6 cut(s)	167, 398, 630, 1049, 1734, 2063
BfmI	CTRYAG	3 cut(s)	807, 915, 1905
BfrI	CTTAAG	2 cut(s)	587, 1697
BglII	AGATCT	2 cut(s)	248, 979
BmcAI	AGTACT	1 cut(s)	859
Bme1390I	CCNGG	1 cut(s)	1965
Bme18I	GGWCC	4 cut(s)	1439, 1651, 1693, 1828
BmgT120I	GGNCC	7 cut(s)	517, 843, 1439, 1651, 1693, 1828, 1946
BmiI	GGNNCC	6 cut(s)	845, 912, 1087, 1440, 1588, 1829
BmrFI	CCNGG	1 cut(s)	1965
BmrI	ACTGGG	1 cut(s)	1953
BmsI	GCATC	6 cut(s)	608, 1652, 1672, 1831, 1986, 2192
BmuI	ACTGGG	1 cut(s)	1953
BoxI	GACNNNNGTC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	766, 798
BpmI	CTGGAG	2 cut(s)	168, 1004
Bpu14I	TTCGAA	1 cut(s)	574
BpuEI	CTTGAG	4 cut(s)	192, 1097, 1399, 1602
BsaBI	GATNNNNATC	2 cut(s)	1815, 1821
BsaJI	CCNNGG	4 cut(s)	1305, 1647, 1963, 2005
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 1407, 1922, 1944, 1955, 2215
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	4 cut(s)	338, 1089, 1948, 2247
Bse3DI	GCAATG	4 cut(s)	975, 1378, 1744, 2020
Bse8I	GATNNNNATC	2 cut(s)	1815, 1821
BseBI	CCWGG	1 cut(s)	1965
BseDI	CCNNGG	4 cut(s)	1305, 1647, 1963, 2005
BseGI	GGATG	7 cut(s)	100, 733, 847, 1301, 1643, 1663, 1681
BseJI	GATNNNNATC	2 cut(s)	1815, 1821
BseLI	CCNNNNNNNGG	6 cut(s)	55, 1407, 1922, 1944, 1955, 2215
BseMI	GCAATG	4 cut(s)	975, 1378, 1744, 2020
BseMII	CTCAG	5 cut(s)	399, 696, 797, 1327, 1338
BseNI	ACTGG	4 cut(s)	338, 1089, 1948, 2247
BseRI	GAGGAG	2 cut(s)	628, 1347
BseSI	GKGCMC	1 cut(s)	868
BseYI	CCCAGC	2 cut(s)	225, 2084
Bsh1236I	CGCG	2 cut(s)	826, 1512
BshFI	GGCC	5 cut(s)	162, 519, 844, 993, 1948
BsiHKAI	GWGCWC	1 cut(s)	1314
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	6 cut(s)	55, 1407, 1922, 1944, 1955, 2215
BsmAI	GTCTC	5 cut(s)	980, 1073, 1343, 1375, 1764
BsmBI	CGTCTC	1 cut(s)	1375
BsmI	GAATGC	2 cut(s)	1515, 1939
BsnI	GGCC	5 cut(s)	162, 519, 844, 993, 1948
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1286I	GDGCHC	2 cut(s)	868, 1314
Bsp19I	CCATGG	1 cut(s)	2005
BspANI	GGCC	5 cut(s)	162, 519, 844, 993, 1948
BspCNI	CTCAG	5 cut(s)	400, 697, 796, 1326, 1339
BspFNI	CGCG	2 cut(s)	826, 1512
BspHI	TCATGA	4 cut(s)	492, 505, 1291, 1807
BspLI	GGNNCC	6 cut(s)	845, 912, 1087, 1440, 1588, 1829
BspMAI	CTGCAG	2 cut(s)	919, 1909
BspPI	GGATC	3 cut(s)	1581, 1594, 1933
BspQI	GCTCTTC	1 cut(s)	136
BspT104I	TTCGAA	1 cut(s)	574
BspTI	CTTAAG	2 cut(s)	587, 1697
BsrBI	CCGCTC	1 cut(s)	51
BsrDI	GCAATG	4 cut(s)	975, 1378, 1744, 2020
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	4 cut(s)	338, 1089, 1948, 2247
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	4 cut(s)	1305, 1647, 1963, 2005
BssSI	CACGAG	1 cut(s)	2302
BssT1I	CCWWGG	1 cut(s)	2005
Bst2BI	CACGAG	1 cut(s)	2302
Bst2UI	CCWGG	1 cut(s)	1965
Bst6I	CTCTTC	2 cut(s)	136, 1399
BstAFI	CTTAAG	2 cut(s)	587, 1697
BstBI	TTCGAA	1 cut(s)	574
BstC8I	GCNNGC	4 cut(s)	164, 357, 938, 1154
BstDEI	CTNAG	7 cut(s)	408, 705, 783, 1258, 1313, 1328, 1347
BstDSI	CCRYGG	3 cut(s)	1305, 1647, 2005
BstEII	GGTNACC	1 cut(s)	1958
BstENI	CCTNNNNNAGG	2 cut(s)	1405, 1953
BstF5I	GGATG	7 cut(s)	100, 733, 847, 1301, 1643, 1663, 1681
BstFNI	CGCG	2 cut(s)	826, 1512
BstHHI	GCGC	1 cut(s)	1279
BstMAI	GTCTC	5 cut(s)	980, 1073, 1343, 1375, 1764
BstMWI	GCNNNNNNNGC	4 cut(s)	447, 1427, 1867, 1910
BstNI	CCWGG	1 cut(s)	1965
BstNSI	RCATGY	6 cut(s)	245, 833, 1156, 1454, 1718, 2149
BstPAI	GACNNNNGTC	1 cut(s)	31
BstPI	GGTNACC	1 cut(s)	1958
BstSCI	CCNGG	1 cut(s)	1963
BstSFI	CTRYAG	3 cut(s)	807, 915, 1905
BstSLI	GKGCMC	1 cut(s)	868
BstUI	CGCG	2 cut(s)	826, 1512
BstX2I	RGATCY	3 cut(s)	248, 979, 1586
BstYI	RGATCY	3 cut(s)	248, 979, 1586
BsuRI	GGCC	5 cut(s)	162, 519, 844, 993, 1948
BtgI	CCRYGG	3 cut(s)	1305, 1647, 2005
BtsCI	GGATG	7 cut(s)	100, 733, 847, 1301, 1643, 1663, 1681
BtsI	GCAGTG	2 cut(s)	305, 1031
BtsIMutI	CAGTG	4 cut(s)	305, 1031, 1200, 1344
Cac8I	GCNNGC	4 cut(s)	164, 357, 938, 1154
CciI	TCATGA	4 cut(s)	492, 505, 1291, 1807
CfoI	GCGC	1 cut(s)	1279
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	7 cut(s)	517, 843, 1439, 1651, 1693, 1828, 1946
Csp6I	GTAC	4 cut(s)	858, 1358, 1754, 2055
CspCI	CAANNNNNGTGG	4 cut(s)	757, 792, 1969, 2004
CviQI	GTAC	4 cut(s)	858, 1358, 1754, 2055
DdeI	CTNAG	7 cut(s)	408, 705, 783, 1258, 1313, 1328, 1347
DraIII	CACNNNGTG	1 cut(s)	1922
DrdI	GACNNNNNNGTC	1 cut(s)	1373
DseDI	GACNNNNNNGTC	1 cut(s)	1373
Eam1104I	CTCTTC	2 cut(s)	136, 1399
EarI	CTCTTC	2 cut(s)	136, 1399
Ecl136II	GAGCTC	1 cut(s)	1312
Eco130I	CCWWGG	1 cut(s)	2005
Eco147I	AGGCCT	1 cut(s)	993
Eco24I	GRGCYC	1 cut(s)	1314
Eco47I	GGWCC	4 cut(s)	1439, 1651, 1693, 1828
Eco53kI	GAGCTC	1 cut(s)	1312
Eco57I	CTGAAG	2 cut(s)	1178, 1380
Eco91I	GGTNACC	1 cut(s)	1958
EcoICRI	GAGCTC	1 cut(s)	1312
EcoNI	CCTNNNNNAGG	2 cut(s)	1405, 1953
EcoO109I	RGGNCCY	2 cut(s)	1439, 1693
EcoO65I	GGTNACC	1 cut(s)	1958
EcoRI	GAATTC	2 cut(s)	1502, 2262
EcoRII	CCWGG	1 cut(s)	1963
EcoT14I	CCWWGG	1 cut(s)	2005
EcoT38I	GRGCYC	1 cut(s)	1314
ErhI	CCWWGG	1 cut(s)	2005
Esp3I	CGTCTC	1 cut(s)	1375
FalI	AAGNNNNNCTT	4 cut(s)	1112, 1144, 1490, 1522
FbaI	TGATCA	2 cut(s)	489, 1816
FblI	GTMKAC	1 cut(s)	215
FokI	GGATG	7 cut(s)	107, 740, 834, 1288, 1630, 1650, 1668
FriOI	GRGCYC	1 cut(s)	1314
FspBI	CTAG	6 cut(s)	167, 398, 630, 1049, 1734, 2063
GlaI	GCGC	1 cut(s)	1278
GsaI	CCCAGC	2 cut(s)	229, 2088
GsuI	CTGGAG	2 cut(s)	168, 1004
HaeIII	GGCC	5 cut(s)	162, 519, 844, 993, 1948
HapII	CCGG	1 cut(s)	163
HhaI	GCGC	1 cut(s)	1279
Hin6I	GCGC	1 cut(s)	1277
HinP1I	GCGC	1 cut(s)	1277
HincII	GTYRAC	4 cut(s)	216, 553, 817, 1267
HindII	GTYRAC	4 cut(s)	216, 553, 817, 1267
HindIII	AAGCTT	1 cut(s)	1233
HinfI	GANTC	9 cut(s)	125, 281, 334, 367, 509, 890, 1141, 1205, 1391
HpaI	GTTAAC	1 cut(s)	1267
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	3 cut(s)	292, 1826, 2114
Hpy166II	GTNNAC	8 cut(s)	216, 553, 817, 877, 1094, 1267, 1846, 2039
Hpy188I	TCNGA	8 cut(s)	37, 706, 786, 1390, 1611, 1636, 2187, 2210
Hpy8I	GTNNAC	8 cut(s)	216, 553, 817, 877, 1094, 1267, 1846, 2039
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	6 cut(s)	940, 1155, 1452, 1616, 1684, 1949
HpyCH4IV	ACGT	2 cut(s)	1135, 1263
HpyCH4V	TGCA	8 cut(s)	321, 355, 917, 968, 1625, 1663, 1855, 1907
HpyF10VI	GCNNNNNNNGC	4 cut(s)	447, 1427, 1867, 1910
HpyF3I	CTNAG	7 cut(s)	408, 705, 783, 1258, 1313, 1328, 1347
HpySE526I	ACGT	2 cut(s)	1135, 1263
HspAI	GCGC	1 cut(s)	1277
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Ksp22I	TGATCA	2 cut(s)	489, 1816
KspAI	GTTAAC	1 cut(s)	1267
LguI	GCTCTTC	1 cut(s)	136
LmnI	GCTCC	3 cut(s)	1055, 1309, 2010
LweI	GCATC	6 cut(s)	608, 1652, 1672, 1831, 1986, 2192
MaeI	CTAG	6 cut(s)	167, 398, 630, 1049, 1734, 2063
MaeII	ACGT	2 cut(s)	1135, 1263
MbiI	CCGCTC	1 cut(s)	51
MboII	GAAGA	8 cut(s)	131, 153, 376, 386, 746, 1019, 1386, 1906
MfeI	CAATTG	1 cut(s)	316
MflI	RGATCY	3 cut(s)	248, 979, 1586
MhlI	GDGCHC	2 cut(s)	868, 1314
MlyI	GAGTC	3 cut(s)	134, 1150, 1385
MmeI	TCCRAC	5 cut(s)	15, 733, 1435, 1678, 2029
MroNI	GCCGGC	1 cut(s)	162
MroXI	GAANNNNTTC	2 cut(s)	333, 1506
MseI	TTAA	9 cut(s)	9, 255, 404, 446, 528, 588, 1266, 1338, 1698
MslI	CAYNNNNRTG	4 cut(s)	882, 1284, 1812, 1836
MspA1I	CMGCKG	4 cut(s)	920, 1867, 1910, 2034
MspCI	CTTAAG	2 cut(s)	587, 1697
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	1965
MunI	CAATTG	1 cut(s)	316
Mva1269I	GAATGC	2 cut(s)	1515, 1939
MvaI	CCWGG	1 cut(s)	1965
MvnI	CGCG	2 cut(s)	826, 1512
MwoI	GCNNNNNNNGC	4 cut(s)	447, 1427, 1867, 1910
NaeI	GCCGGC	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	2005
NgoMIV	GCCGGC	1 cut(s)	162
NlaIV	GGNNCC	6 cut(s)	845, 912, 1087, 1440, 1588, 1829
NmuCI	GTSAC	5 cut(s)	14, 298, 764, 1871, 2102
NspI	RCATGY	6 cut(s)	245, 833, 1156, 1454, 1718, 2149
NspV	TTCGAA	1 cut(s)	574
PaeI	GCATGC	1 cut(s)	1156
PagI	TCATGA	4 cut(s)	492, 505, 1291, 1807
PceI	AGGCCT	1 cut(s)	993
PciI	ACATGT	3 cut(s)	241, 1714, 2145
PciSI	GCTCTTC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	2 cut(s)	1260, 1516
PctI	GAATGC	2 cut(s)	1515, 1939
PdiI	GCCGGC	1 cut(s)	164
PdmI	GAANNNNTTC	2 cut(s)	333, 1506
PfeI	GAWTC	6 cut(s)	281, 334, 367, 509, 890, 1205
PflMI	CCANNNNNTGG	1 cut(s)	1922
PleI	GAGTC	3 cut(s)	133, 1149, 1385
PpsI	GAGTC	3 cut(s)	133, 1149, 1385
PpuMI	RGGWCCY	2 cut(s)	1439, 1693
PscI	ACATGT	3 cut(s)	241, 1714, 2145
PshAI	GACNNNNGTC	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	1721
Psp124BI	GAGCTC	1 cut(s)	1314
Psp5II	RGGWCCY	2 cut(s)	1439, 1693
Psp6I	CCWGG	1 cut(s)	1963
PspEI	GGTNACC	1 cut(s)	1958
PspFI	CCCAGC	2 cut(s)	225, 2084
PspGI	CCWGG	1 cut(s)	1963
PspN4I	GGNNCC	6 cut(s)	845, 912, 1087, 1440, 1588, 1829
PspPI	GGNCC	7 cut(s)	517, 843, 1439, 1651, 1693, 1828, 1946
PspPPI	RGGWCCY	2 cut(s)	1439, 1693
PstI	CTGCAG	2 cut(s)	919, 1909
PsuI	RGATCY	3 cut(s)	248, 979, 1586
PvuII	CAGCTG	3 cut(s)	920, 1867, 1910
RsaI	GTAC	4 cut(s)	859, 1359, 1755, 2056
RsaNI	GTAC	4 cut(s)	858, 1358, 1754, 2055
RseI	CAYNNNNRTG	4 cut(s)	882, 1284, 1812, 1836
SacI	GAGCTC	1 cut(s)	1314
SalI	GTCGAC	1 cut(s)	214
SapI	GCTCTTC	1 cut(s)	136
SaqAI	TTAA	9 cut(s)	9, 255, 404, 446, 528, 588, 1266, 1338, 1698
Sau96I	GGNCC	7 cut(s)	517, 843, 1439, 1651, 1693, 1828, 1946
ScaI	AGTACT	1 cut(s)	859
SchI	GAGTC	3 cut(s)	134, 1150, 1385
ScrFI	CCNGG	1 cut(s)	1965
SduI	GDGCHC	2 cut(s)	868, 1314
SfaNI	GCATC	6 cut(s)	608, 1652, 1672, 1831, 1986, 2192
SfcI	CTRYAG	3 cut(s)	807, 915, 1905
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	4 cut(s)	1439, 1651, 1693, 1828
SmiMI	CAYNNNNRTG	4 cut(s)	882, 1284, 1812, 1836
SmlI	CTYRAG	6 cut(s)	207, 587, 1076, 1378, 1617, 1697
SmoI	CTYRAG	6 cut(s)	207, 587, 1076, 1378, 1617, 1697
SphI	GCATGC	1 cut(s)	1156
SseBI	AGGCCT	1 cut(s)	993
SspI	AATATT	1 cut(s)	1003
SspMI	CTAG	6 cut(s)	167, 398, 630, 1049, 1734, 2063
SstI	GAGCTC	1 cut(s)	1314
StuI	AGGCCT	1 cut(s)	993
StyD4I	CCNGG	1 cut(s)	1963
StyI	CCWWGG	1 cut(s)	2005
TaiI	ACGT	2 cut(s)	1138, 1266
TaqI	TCGA	8 cut(s)	114, 128, 215, 574, 1519, 1931, 2260, 2266
TatI	WGTACW	2 cut(s)	857, 1357
TauI	GCSGC	2 cut(s)	1515, 2284
TfiI	GAWTC	6 cut(s)	281, 334, 367, 509, 890, 1205
Tru1I	TTAA	9 cut(s)	9, 255, 404, 446, 528, 588, 1266, 1338, 1698
Tru9I	TTAA	9 cut(s)	9, 255, 404, 446, 528, 588, 1266, 1338, 1698
TscAI	CASTG	4 cut(s)	312, 1031, 1207, 1351
TseFI	GTSAC	5 cut(s)	14, 298, 764, 1871, 2102
Tsp45I	GTSAC	5 cut(s)	14, 298, 764, 1871, 2102
TspDTI	ATGAA	7 cut(s)	17, 342, 828, 1280, 1290, 1308, 2154
TspGWI	ACGGA	4 cut(s)	487, 1294, 2040, 2171
TspRI	CASTG	4 cut(s)	312, 1031, 1207, 1351
Van91I	CCANNNNNTGG	1 cut(s)	1922
Vha464I	CTTAAG	2 cut(s)	587, 1697
VpaK11BI	GGWCC	4 cut(s)	1439, 1651, 1693, 1828
XagI	CCTNNNNNAGG	2 cut(s)	1405, 1953
XapI	RAATTY	3 cut(s)	1296, 1502, 2262
XceI	RCATGY	6 cut(s)	245, 833, 1156, 1454, 1718, 2149
XcmI	CCANNNNNNNNNTGG	2 cut(s)	629, 2012
XmiI	GTMKAC	1 cut(s)	215
XmnI	GAANNNNTTC	2 cut(s)	333, 1506
XspI	CTAG	6 cut(s)	167, 398, 630, 1049, 1734, 2063
ZrmI	AGTACT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.