Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003329

Physical Location & Seq

Genomic Coordinates Reverse (-)

7387292 .. 7390633

Gene Structure 3342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0094600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGTCGCTGGTATGGATGGAAGCGATGCTTCCGCTCGGAATCATCGCCGGAATGCTGTGCGTGATGGGAAATGCTCAGTACTATATTCACAGAGCCGCGCATGGCCGGCCGAAGCATATCGGAAACGACATGTGGGATGTGGCCATGGAAAGAAGGGACAAGAAGCTCATCGAGCAGGCCACTGCTCCTTCTTCTTCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

67

Amino Acids

7.51

Weight (kDa)

7.96

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MWFE	PF15879	5 - 56	4.6e-15	NADH-ubiquinone oxidoreductase MWFE subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37260 AT2G37260 AT2G37260
fragaria_vesca	FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050
malus_domestica	MD04G1112800.v1.1 MD04G1113100.v1.1 MD12G1128800.v1.1 MD12G1129000.v1.1
prunus_persica	Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1
pyrus_communis	pycom04g10230 pycom12g12530
rosa_chinensis	RchiOBHm_Chr3g0468221
rosa_laevigata	RLG00000024440
rosa_multiflora	Rmu_sc0004524.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412890
rosa_rugosa	Rorug03G0094300 Rorug03G0094400 Rorug03G0094500 Rorug03G0094600 Rorug03G0094600
rosa_samantha	Rh3AG142000 Rh3BG163400 Rh3DG164100
rosa_wichuraiana	Rw3G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	34
AccII	CGCG	1 cut(s)	98
AciI	CCGC	2 cut(s)	32, 96
AcoI	YGGCCR	3 cut(s)	103, 107, 141
AfaI	GTAC	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	129
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AoxI	GGCC	4 cut(s)	103, 107, 141, 177
AspLEI	GCGC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	143
BccI	CCATC	2 cut(s)	10, 58
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmcAI	AGTACT	1 cut(s)	80
BmsI	GCATC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	21, 142
BseMII	CTCAG	1 cut(s)	89
BseX3I	CGGCCG	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	4 cut(s)	105, 109, 143, 179
BsiEI	CGRYCG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	48, 106
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	4 cut(s)	105, 109, 143, 179
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	2 cut(s)	32, 96
BspANI	GGCC	4 cut(s)	105, 109, 143, 179
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	107, 177
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	21, 142
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	100
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 172
BstNSI	RCATGY	1 cut(s)	133
BstUI	CGCG	1 cut(s)	98
BstZI	CGGCCG	1 cut(s)	107
BsuRI	GGCC	4 cut(s)	105, 109, 143, 179
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	2 cut(s)	28, 38
BtsCI	GGATG	2 cut(s)	21, 142
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	107, 177
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	3 cut(s)	101, 130, 145
CviJI	RGCY	6 cut(s)	95, 105, 109, 143, 166, 179
CviKI_1	RGCY	6 cut(s)	95, 105, 109, 143, 166, 179
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	75
EaeI	YGGCCR	3 cut(s)	103, 107, 141
EagI	CGGCCG	1 cut(s)	107
EclXI	CGGCCG	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	144
Eco52I	CGGCCG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	104, 133, 148
FaiI	YATR	6 cut(s)	13, 84, 102, 117, 131, 146
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	100, 129, 144
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	2 cut(s)	28, 149
FseI	GGCCGGCC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	96
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	4 cut(s)	105, 109, 143, 179
HapII	CCGG	2 cut(s)	48, 106
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	104, 133, 148
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	48, 106
Hpy188I	TCNGA	2 cut(s)	38, 122
HpyAV	CCTTC	2 cut(s)	147, 198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 172
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	104, 133, 148
HspAI	GCGC	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	3 cut(s)	61, 119, 161
LweI	GCATC	1 cut(s)	15
MbiI	CCGCTC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	183, 186
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	1 cut(s)	199
MluNI	TGGCCA	1 cut(s)	143
Mox20I	TGGCCA	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	2 cut(s)	48, 106
Mva1269I	GAATGC	1 cut(s)	57
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	106, 172
NaeI	GCCGGC	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	144
NgoMIV	GCCGGC	1 cut(s)	105
NlaIII	CATG	3 cut(s)	104, 133, 148
NspI	RCATGY	1 cut(s)	133
PciI	ACATGT	1 cut(s)	129
PctI	GAATGC	1 cut(s)	57
PdiI	GCCGGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	129
RigI	GGCCGGCC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	1 cut(s)	96
ScaI	AGTACT	1 cut(s)	80
SetI	ASST	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	15
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	32, 96
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	199
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	39
TscAI	CASTG	1 cut(s)	187
TspRI	CASTG	1 cut(s)	187
XceI	RCATGY	1 cut(s)	133
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.