Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003329

Physical Location & Seq

Genomic Coordinates Forward (+)

15644811 .. 15647076

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAGGTGAATGATGGTGAAAGAGTGGTAATAGCAAAACCAGTTGCCTCAAGACCTTCTTCAAGTTCTGGCTTCAGGACATTCACTGAGCTTCTTACTGATTCAGTTACCGTATCTCCGCAAACGACTTGCCACGAGATTGTAGACGCTGCTATAAGACCAAAGACTTTGAGATTCAATCAGCCAGTAGCAGCTTCGGTCTCATGTCCACGGGCTGAAGTAAAAGGTATTGGAAATGGAATGTCTTGTGATGATGATTCAGATAGCAGAAACTACGTCGTTTATAAACCGAAAGCAAAGCTTGTCTCCAAAGCAACCGTCTCTGCATTGGCTAATATGCTTCAGGGGAATCGTCAACAAACTTGGAGACAAAGCGAAGCAGTATCCTATGGGAAGAGTGTGAGCCAAGGTACACATCGAGCAGGTCCTAATCTAGTCCAGAAAGTTCCATCTTTTACGGAATCAGAGACATCTACTGGGGATAGATCTTCTGTGGATGGATACAACTGGAGGAAATACGGACAGAAGCAAGTTAAAGGAAGTGAGTGTCCAAGGAGTTATTACAAATGCACACACCCGAAATGTCCGGTGAAGAAGAAAGTAGAGAGATCAGTGGAAGGTCAAGTTTCAGAGATTGTGTATCAAGGTGAACATAATCACTCAAAGCCATCTTGTCCTCTTCCACGGCGTGCTTCATCATCAATCTCTTCAGGGTTTCAAAAACCACCAAAATCGATTGCTTCTGAAGGATCAATGGGACAAGACCCTAACAATAATCTCTATTCTCCTCTATGGAACAATCAAAGCAATGACTCTACTCAAAACAGAACAGAGAAGATGAGTGAAGGTTGTGTTATTACACCATTTGAGTTTGCTGTTCCAAGATCGACAAATTCAAATCCCGGAACTTCAGATTCCGGTTGCAAGAGTAGCCAATGTGATGAAGGAGAGCTTGATGATCCAAGCAGAAGCAAAAGAAGGAAGAACGAGAAGCAATCTAGTGAAGCAGGAGTATCGCAAGGCTCAGTGGAATCAGACAGTCTTGAAGATGGATTCAGGTGGAGAAAGTATGGACAAAAAGTGGTAGGAGGCAATGCGTATCCAAGAAGTTATTACAGATGCACAAGTGCTAATTGCAGAGCAAGGAAACATGTTGAACGAGCGAGTGATGATCCAAGAGCTTTCATTACAACCTACGAGGGTAAACATAATCATCATTTGCTCTTGAGCCCTCCATCTTCCTCTACTCTTCCCTTTAACTCCCCACAACTTTCTAAGCAAACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009957 GO:0009987 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045165 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

429

Amino Acids

47.14

Weight (kDa)

9.23

Isoelectric Point (pI)

62.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	86 - 140	1.1e-25	WRKY DNA -binding domain
WRKY	PF03106	269 - 326	3.5e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37260 AT2G37260 AT2G37260
fragaria_vesca	FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050
malus_domestica	MD04G1112800.v1.1 MD04G1113100.v1.1 MD12G1128800.v1.1 MD12G1129000.v1.1
prunus_persica	Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1
pyrus_communis	pycom04g10230 pycom12g12530
rosa_chinensis	RchiOBHm_Chr3g0468221
rosa_laevigata	RLG00000024440
rosa_multiflora	Rmu_sc0004524.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412890
rosa_rugosa	Rorug03G0094300 Rorug03G0094400 Rorug03G0094500 Rorug03G0094600 Rorug03G0094600
rosa_samantha	Rh3AG142000 Rh3BG163400 Rh3DG164100
rosa_wichuraiana	Rw3G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	3 cut(s)	757, 953, 1166
AcsI	RAATTY	1 cut(s)	892
AcuI	CTGAAG	6 cut(s)	58, 237, 326, 693, 765, 894
AdeI	CACNNNGTG	1 cut(s)	689
AfaI	GTAC	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	1150
AgsI	TTSAA	6 cut(s)	63, 178, 719, 897, 1046, 1157
AluBI	AGCT	5 cut(s)	91, 194, 301, 952, 1181
AluI	AGCT	5 cut(s)	91, 194, 301, 952, 1181
Alw26I	GTCTC	5 cut(s)	205, 310, 325, 361, 461
AlwI	GGATC	3 cut(s)	757, 953, 1166
ApeKI	GCWGC	2 cut(s)	149, 191
ApoI	RAATTY	1 cut(s)	892
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspS9I	GGNCC	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	903
AsuHPI	GGTGA	4 cut(s)	19, 29, 601, 659
AvaII	GGWCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	1232
BauI	CACGAG	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	136, 203
BccI	CCATC	6 cut(s)	8, 457, 491, 676, 1043, 1243
BceAI	ACGGC	1 cut(s)	701
BcgI	CGANNNNNNTGC	2 cut(s)	996, 1030
BciVI	GTATCC	3 cut(s)	394, 494, 1110
BcnI	CCSGG	1 cut(s)	903
BcoDI	GTCTC	5 cut(s)	205, 310, 325, 361, 461
BfaI	CTAG	2 cut(s)	434, 999
BfuAI	ACCTGC	1 cut(s)	413
BfuI	GTATCC	3 cut(s)	394, 494, 1110
BglII	AGATCT	1 cut(s)	485
BisI	GCNGC	2 cut(s)	150, 192
BlsI	GCNGC	2 cut(s)	151, 193
Bme1390I	CCNGG	1 cut(s)	903
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmrFI	CCNGG	1 cut(s)	903
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	1 cut(s)	1109
BmuI	ACTGGG	1 cut(s)	486
BpmI	CTGGAG	1 cut(s)	529
BpuEI	CTTGAG	2 cut(s)	34, 1246
BpuMI	CCSGG	1 cut(s)	903
Bsa29I	ATCGAT	1 cut(s)	734
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	4 cut(s)	209, 406, 551, 683
BsaWI	WCCGGW	2 cut(s)	586, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse1I	ACTGG	4 cut(s)	41, 185, 481, 512
Bse3DI	GCAATG	2 cut(s)	814, 1099
BseCI	ATCGAT	1 cut(s)	734
BseDI	CCNNGG	4 cut(s)	209, 406, 551, 683
BseGI	GGATG	1 cut(s)	502
BseMI	GCAATG	2 cut(s)	814, 1099
BseMII	CTCAG	2 cut(s)	78, 1038
BseNI	ACTGG	4 cut(s)	41, 185, 481, 512
BseRI	GAGGAG	1 cut(s)	777
BseXI	GCAGC	2 cut(s)	136, 203
BshVI	ATCGAT	1 cut(s)	734
BsiSI	CCGG	3 cut(s)	587, 903, 918
BslFI	GGGAC	1 cut(s)	771
BsmAI	GTCTC	5 cut(s)	205, 310, 325, 361, 461
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	771
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	1232
Bsp143I	GATC	6 cut(s)	485, 608, 749, 884, 958, 1171
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	79, 1037
BspDI	ATCGAT	1 cut(s)	734
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	3 cut(s)	757, 953, 1166
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	814, 1099
BsrI	ACTGG	4 cut(s)	41, 185, 481, 512
BssECI	CCNNGG	4 cut(s)	209, 406, 551, 683
BssMI	GATC	6 cut(s)	485, 608, 749, 884, 958, 1171
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	2 cut(s)	406, 551
Bst2BI	CACGAG	1 cut(s)	134
Bst4CI	ACNGT	3 cut(s)	112, 319, 1040
Bst6I	CTCTTC	4 cut(s)	389, 684, 712, 1254
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	3 cut(s)	87, 1024, 1275
BstDSI	CCRYGG	2 cut(s)	209, 683
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	6 cut(s)	488, 611, 752, 887, 961, 1174
BstMAI	GTCTC	5 cut(s)	205, 310, 325, 361, 461
BstMBI	GATC	6 cut(s)	485, 608, 749, 884, 958, 1171
BstMWI	GCNNNNNNNGC	1 cut(s)	930
BstNSI	RCATGY	1 cut(s)	1154
BstSCI	CCNGG	1 cut(s)	901
BstV1I	GCAGC	2 cut(s)	136, 203
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
Bsu15I	ATCGAT	1 cut(s)	734
BsuI	GTATCC	3 cut(s)	394, 494, 1110
BsuTUI	ATCGAT	1 cut(s)	734
BtgI	CCRYGG	2 cut(s)	209, 683
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	3 cut(s)	84, 618, 1032
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	690
Cfr13I	GGNCC	1 cut(s)	425
ClaI	ATCGAT	1 cut(s)	734
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	2 cut(s)	204, 1151
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	87, 1024, 1275
DpnI	GATC	6 cut(s)	487, 610, 751, 886, 960, 1173
DpnII	GATC	6 cut(s)	485, 608, 749, 884, 958, 1171
DraIII	CACNNNGTG	1 cut(s)	689
Eam1104I	CTCTTC	4 cut(s)	389, 684, 712, 1254
EarI	CTCTTC	4 cut(s)	389, 684, 712, 1254
Eco130I	CCWWGG	2 cut(s)	406, 551
Eco24I	GRGCYC	1 cut(s)	1232
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	6 cut(s)	58, 237, 326, 693, 765, 894
EcoO109I	RGGNCCY	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	406, 551
EcoT38I	GRGCYC	1 cut(s)	1232
ErhI	CCWWGG	2 cut(s)	406, 551
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	2 cut(s)	207, 1154
FalI	AAGNNNNNCTT	6 cut(s)	43, 75, 285, 317, 936, 968
FaqI	GGGAC	1 cut(s)	771
FatI	CATG	2 cut(s)	203, 1150
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	150, 192
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	1232
Fsp4HI	GCNGC	2 cut(s)	150, 192
FspBI	CTAG	2 cut(s)	434, 999
GluI	GCNGC	2 cut(s)	150, 192
GsuI	CTGGAG	1 cut(s)	529
HapII	CCGG	3 cut(s)	587, 903, 918
HgaI	GACGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	207, 1154
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	9 cut(s)	101, 174, 257, 349, 461, 812, 914, 1031, 1053
HpaII	CCGG	3 cut(s)	587, 903, 918
HphI	GGTGA	4 cut(s)	19, 29, 601, 659
Hpy166II	GTNNAC	6 cut(s)	145, 209, 356, 413, 650, 1205
Hpy188I	TCNGA	6 cut(s)	262, 466, 631, 745, 913, 1036
Hpy188III	TCNNGA	5 cut(s)	51, 76, 439, 1043, 1225
Hpy8I	GTNNAC	6 cut(s)	145, 209, 356, 413, 650, 1205
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	6 cut(s)	66, 611, 740, 839, 938, 972
HpyCH4III	ACNGT	3 cut(s)	112, 319, 1040
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	5 cut(s)	326, 570, 924, 1122, 1137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	930
HpyF3I	CTNAG	3 cut(s)	87, 1024, 1275
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	207, 1154
Kzo9I	GATC	6 cut(s)	485, 608, 749, 884, 958, 1171
Lsp1109I	GCAGC	2 cut(s)	136, 203
LweI	GCATC	1 cut(s)	1109
MaeI	CTAG	2 cut(s)	434, 999
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	6 cut(s)	487, 610, 751, 886, 960, 1173
MboI	GATC	6 cut(s)	485, 608, 749, 884, 958, 1171
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	1232
MluCI	AATT	3 cut(s)	892, 1132, 1284
MlyI	GAGTC	1 cut(s)	806
MnlI	CCTC	8 cut(s)	58, 504, 687, 798, 1082, 1192, 1242, 1252
MseI	TTAA	2 cut(s)	534, 1257
MspI	CCGG	3 cut(s)	587, 903, 918
MspR9I	CCNGG	1 cut(s)	903
MwoI	GCNNNNNNNGC	1 cut(s)	930
NciI	CCSGG	1 cut(s)	903
NdeII	GATC	6 cut(s)	485, 608, 749, 884, 958, 1171
NlaIII	CATG	2 cut(s)	207, 1154
NspI	RCATGY	1 cut(s)	1154
PciI	ACATGT	1 cut(s)	1150
PfeI	GAWTC	8 cut(s)	101, 174, 257, 349, 461, 914, 1031, 1053
PfoI	TCCNGGA	1 cut(s)	901
PkrI	GCNGC	2 cut(s)	151, 193
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
PpuMI	RGGWCCY	1 cut(s)	425
PscI	ACATGT	1 cut(s)	1150
PsiI	TTATAA	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	425
PspPPI	RGGWCCY	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	534, 1257
SatI	GCNGC	2 cut(s)	150, 192
Sau3AI	GATC	6 cut(s)	485, 608, 749, 884, 958, 1171
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	1 cut(s)	903
SduI	GDGCHC	1 cut(s)	1232
SfaNI	GCATC	1 cut(s)	1109
SinI	GGWCC	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	49, 1225
SmoI	CTYRAG	2 cut(s)	49, 1225
Sse9I	AATT	3 cut(s)	892, 1132, 1284
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	434, 999
StyD4I	CCNGG	1 cut(s)	901
StyI	CCWWGG	2 cut(s)	406, 551
TaaI	ACNGT	3 cut(s)	112, 319, 1040
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	418, 734, 887
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	3 cut(s)	892, 1132, 1284
TfiI	GAWTC	8 cut(s)	101, 174, 257, 349, 461, 914, 1031, 1053
Tru1I	TTAA	2 cut(s)	534, 1257
Tru9I	TTAA	2 cut(s)	534, 1257
TscAI	CASTG	3 cut(s)	91, 618, 1032
TseI	GCWGC	2 cut(s)	149, 191
TspDTI	ATGAA	3 cut(s)	684, 957, 1174
TspGWI	ACGGA	2 cut(s)	473, 534
TspRI	CASTG	3 cut(s)	91, 618, 1032
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	892
XceI	RCATGY	1 cut(s)	1154
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	434, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.