Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003329

Physical Location & Seq

Genomic Coordinates Reverse (-)

14087993 .. 14092826

Gene Structure 4834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG163400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATTGTCTATTCAATAAATGTGCAAAGACATAGACTTAGAAATTGTCTAAAATCTGAAGATAACCCTTTGTTTTTTTACCAGGGAAACTTCAATACTAGCCAGCAACAACCACAATCATCAGTTGGGGTTGGAGTGGTTCTACATCCAAACCGTGAAAAATGCTTTAAAACCCAACTTATCTCCAACCTCTACCAGAAAAGTCCATCATGTGCTGAGACATGCCAGAGTACAGAACCAGTAAAGATAGTACCACAAAATATGGAAGAGGATGCAAAAAATATACCAGCTGCAGCCAATAGTGATAGGCCTTCTTATGATGGATATAATTGGAGAAAATATGGACAAAAGCAAGTCAAAGGAAGTGACTATCCGCGAAGTTATTACAAGTGCACACATCCAAATTGTCCTGTGAAAAAGAAGGTTGAGAGATCTTTGGATGGGCAGATTGCTGAGATTGTATACAAGGGAGAACACAACCACTCAAAGCCTCAGCCTCCAAAGCGCAGCTCCTCTGGGACGCAAGGGTCAGGATTTGCATCTGATGCAACTGGTCAAGATAACAACACCCGGTTATGGAATAGTCATCTTAATGAAAAGAATGAAGGTTCTGAAGGTAGAGTAGAGGATCAGAATGAAGTTGGAGTACCTTTGCATTCTTATCAAAGCAAATCCATAGTACATTATGATCCACTTGCAACTGGAGCATTAAATGCTGGAGGTGCAACTCCTGATAATTCTTGTGGAGTCAGCGGAGAATGCGAGGAAGCAAGCAAGGGAGTTGAAGCAGAGGATTATGAGCCTAGAAGTAAGAGAAGAAAAAGTGAGAATCAATCAAATGAAGTAGGCATATCGGGGGAAGTCATGCAAGAACCTCGGGTTGTGGTGCAGAGTTCTGCAGATTCTGAGATTACAGGTGATGGCTTCCGCTGGAGGAAATATGGGCAGAAGGTTGTAAAGGGGAATCCATATCCCAGGTTAGAAATGGCTTCTTTGTTATCTATTACGTTGGTGTATTGTGGTTATTATCAAGATAATTCTCTTAGGTGTTGGCCAAAGTACTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009957 GO:0009987 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045165 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

356

Amino Acids

39.81

Weight (kDa)

8.21

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	107 - 161	1.2e-26	WRKY DNA -binding domain
WRKY	PF03106	307 - 326	1.9e-06	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37260 AT2G37260 AT2G37260
fragaria_vesca	FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050
malus_domestica	MD04G1112800.v1.1 MD04G1113100.v1.1 MD12G1128800.v1.1 MD12G1129000.v1.1
prunus_persica	Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1
pyrus_communis	pycom04g10230 pycom12g12530
rosa_chinensis	RchiOBHm_Chr3g0468221
rosa_laevigata	RLG00000024440
rosa_multiflora	Rmu_sc0004524.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412890
rosa_rugosa	Rorug03G0094300 Rorug03G0094400 Rorug03G0094500 Rorug03G0094600 Rorug03G0094600
rosa_samantha	Rh3AG142000 Rh3BG163400 Rh3DG164100
rosa_wichuraiana	Rw3G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	1 cut(s)	376
AciI	CCGC	3 cut(s)	374, 753, 928
AclWI	GGATC	2 cut(s)	636, 683
AcoI	YGGCCR	1 cut(s)	1052
AcuI	CTGAAG	2 cut(s)	78, 633
AfaI	GTAC	5 cut(s)	232, 252, 648, 681, 1061
AfiI	CCNNNNNNNGG	1 cut(s)	576
AgsI	TTSAA	3 cut(s)	15, 94, 785
AjnI	CCWGG	2 cut(s)	81, 974
AluBI	AGCT	2 cut(s)	290, 510
AluI	AGCT	2 cut(s)	290, 510
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	212
Alw44I	GTGCAC	1 cut(s)	391
AlwI	GGATC	2 cut(s)	636, 683
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	876
AoxI	GGCC	2 cut(s)	308, 1052
ApaLI	GTGCAC	1 cut(s)	391
ApeKI	GCWGC	3 cut(s)	290, 293, 507
AspLEI	GCGC	1 cut(s)	507
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	1 cut(s)	929
AvaI	CYCGRG	1 cut(s)	876
BaeGI	GKGCMC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	1054
BarI	GAAGNNNNNNTAC	2 cut(s)	630, 662
Bbv12I	GWGCWC	1 cut(s)	395
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	277, 305, 519
BccI	CCATC	4 cut(s)	214, 314, 434, 914
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	2 cut(s)	83, 976
BcnI	CCSGG	1 cut(s)	571
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	99, 804
BfmI	CTRYAG	2 cut(s)	291, 897
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	3 cut(s)	291, 294, 508
BlsI	GCNGC	3 cut(s)	292, 295, 509
BmcAI	AGTACT	1 cut(s)	1061
Bme1390I	CCNGG	3 cut(s)	83, 571, 976
BmeT110I	CYCGRG	1 cut(s)	876
BmrFI	CCNGG	3 cut(s)	83, 571, 976
BmsI	GCATC	3 cut(s)	262, 535, 548
BpmI	CTGGAG	3 cut(s)	723, 738, 952
Bpu10I	CCTNAGC	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	571
BsaBI	GATNNNNATC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	82, 875, 974
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse1I	ACTGG	3 cut(s)	239, 556, 706
Bse8I	GATNNNNATC	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	83, 976
BseDI	CCNNGG	3 cut(s)	82, 875, 974
BseGI	GGATG	4 cut(s)	145, 277, 397, 445
BseJI	GATNNNNATC	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMII	CTCAG	4 cut(s)	207, 444, 506, 897
BseNI	ACTGG	3 cut(s)	239, 556, 706
BseRI	GAGGAG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	3 cut(s)	277, 305, 519
BsgI	GTGCAG	1 cut(s)	908
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	2 cut(s)	310, 1054
BsiHKAI	GWGCWC	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	2 cut(s)	655, 764
BsnI	GGCC	2 cut(s)	310, 1054
BsoBI	CYCGRG	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	431, 628, 688
BspACI	CCGC	3 cut(s)	374, 753, 928
BspANI	GGCC	2 cut(s)	310, 1054
BspCNI	CTCAG	4 cut(s)	208, 445, 505, 898
BspFNI	CGCG	1 cut(s)	376
BspMAI	CTGCAG	2 cut(s)	295, 901
BspPI	GGATC	2 cut(s)	636, 683
BsrI	ACTGG	3 cut(s)	239, 556, 706
BssECI	CCNNGG	3 cut(s)	82, 875, 974
BssMI	GATC	3 cut(s)	431, 628, 688
BssNAI	GTATAC	1 cut(s)	463
Bst1107I	GTATAC	1 cut(s)	463
Bst2UI	CCWGG	2 cut(s)	83, 976
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	261
BstAPI	GCANNNNNTGC	2 cut(s)	545, 713
BstC8I	GCNNGC	2 cut(s)	104, 772
BstDEI	CTNAG	6 cut(s)	38, 216, 453, 492, 906, 1043
BstF5I	GGATG	4 cut(s)	145, 277, 397, 445
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	3 cut(s)	434, 631, 691
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	3 cut(s)	431, 628, 688
BstMWI	GCNNNNNNNGC	6 cut(s)	502, 545, 704, 713, 722, 759
BstNI	CCWGG	2 cut(s)	83, 976
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	81, 569, 974
BstSFI	CTRYAG	2 cut(s)	291, 897
BstSLI	GKGCMC	1 cut(s)	395
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	277, 305, 519
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BstZ17I	GTATAC	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	310, 1054
BtsCI	GGATG	4 cut(s)	145, 277, 397, 445
Cac8I	GCNNGC	2 cut(s)	104, 772
CaiI	CAGNNNCTG	1 cut(s)	905
CfoI	GCGC	1 cut(s)	507
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	5 cut(s)	231, 251, 647, 680, 1060
CviAII	CATG	3 cut(s)	210, 222, 865
CviQI	GTAC	5 cut(s)	231, 251, 647, 680, 1060
DdeI	CTNAG	6 cut(s)	38, 216, 453, 492, 906, 1043
DpnI	GATC	3 cut(s)	433, 630, 690
DpnII	GATC	3 cut(s)	431, 628, 688
DraI	TTTAAA	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	526
DseDI	GACNNNNNNGTC	1 cut(s)	526
EaeI	YGGCCR	1 cut(s)	1052
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	310
Eco57I	CTGAAG	2 cut(s)	78, 633
Eco88I	CYCGRG	1 cut(s)	876
EcoRII	CCWGG	2 cut(s)	81, 974
FaeI	CATG	3 cut(s)	213, 225, 868
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	3 cut(s)	209, 221, 864
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	3 cut(s)	291, 294, 508
FokI	GGATG	4 cut(s)	132, 284, 384, 452
Fsp4HI	GCNGC	3 cut(s)	291, 294, 508
FspBI	CTAG	2 cut(s)	99, 804
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	3 cut(s)	291, 294, 508
GsuI	CTGGAG	3 cut(s)	723, 738, 952
HaeIII	GGCC	2 cut(s)	310, 1054
HapII	CCGG	1 cut(s)	571
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	3 cut(s)	213, 225, 868
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HinfI	GANTC	4 cut(s)	747, 829, 902, 964
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	1 cut(s)	929
Hpy166II	GTNNAC	2 cut(s)	393, 463
Hpy188I	TCNGA	5 cut(s)	58, 544, 613, 633, 907
Hpy188III	TCNNGA	4 cut(s)	531, 557, 731, 1031
Hpy8I	GTNNAC	2 cut(s)	393, 463
HpyAV	CCTTC	5 cut(s)	321, 415, 599, 608, 943
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	502, 545, 704, 713, 722, 759
HpyF3I	CTNAG	6 cut(s)	38, 216, 453, 492, 906, 1043
HpySE526I	ACGT	1 cut(s)	1007
Hsp92II	CATG	3 cut(s)	213, 225, 868
HspAI	GCGC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	431, 628, 688
LmnI	GCTCC	2 cut(s)	515, 704
Lsp1109I	GCAGC	3 cut(s)	277, 305, 519
LweI	GCATC	3 cut(s)	262, 535, 548
MaeI	CTAG	2 cut(s)	99, 804
MaeII	ACGT	1 cut(s)	1007
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	433, 630, 690
MboI	GATC	3 cut(s)	431, 628, 688
MboII	GAAGA	3 cut(s)	71, 278, 828
MflI	RGATCY	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	395
MlsI	TGGCCA	1 cut(s)	1054
MluCI	AATT	5 cut(s)	43, 328, 403, 736, 1036
MluNI	TGGCCA	1 cut(s)	1054
MlyI	GAGTC	1 cut(s)	756
MmeI	TCCRAC	3 cut(s)	112, 210, 622
Mox20I	TGGCCA	1 cut(s)	1054
MscI	TGGCCA	1 cut(s)	1054
MseI	TTAA	4 cut(s)	168, 591, 710, 1069
MslI	CAYNNNNRTG	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	1054
MspA1I	CMGCKG	3 cut(s)	290, 753, 930
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	3 cut(s)	83, 571, 976
Mva1269I	GAATGC	2 cut(s)	655, 764
MvaI	CCWGG	2 cut(s)	83, 976
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	6 cut(s)	502, 545, 704, 713, 722, 759
NciI	CCSGG	1 cut(s)	571
NdeII	GATC	3 cut(s)	431, 628, 688
NlaIII	CATG	3 cut(s)	213, 225, 868
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	310
PctI	GAATGC	2 cut(s)	655, 764
PfeI	GAWTC	3 cut(s)	829, 902, 964
PkrI	GCNGC	3 cut(s)	292, 295, 509
PleI	GAGTC	1 cut(s)	755
PpsI	GAGTC	1 cut(s)	755
Psp6I	CCWGG	2 cut(s)	81, 974
PspGI	CCWGG	2 cut(s)	81, 974
PstI	CTGCAG	2 cut(s)	295, 901
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	5 cut(s)	232, 252, 648, 681, 1061
RsaNI	GTAC	5 cut(s)	231, 251, 647, 680, 1060
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	4 cut(s)	168, 591, 710, 1069
SatI	GCNGC	3 cut(s)	291, 294, 508
Sau3AI	GATC	3 cut(s)	431, 628, 688
ScaI	AGTACT	1 cut(s)	1061
SchI	GAGTC	1 cut(s)	756
ScrFI	CCNGG	3 cut(s)	83, 571, 976
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	3 cut(s)	262, 535, 548
SfcI	CTRYAG	2 cut(s)	291, 897
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	5 cut(s)	43, 328, 403, 736, 1036
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	3 cut(s)	374, 753, 928
SspMI	CTAG	2 cut(s)	99, 804
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	3 cut(s)	81, 569, 974
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	1010
TasI	AATT	5 cut(s)	43, 328, 403, 736, 1036
TatI	WGTACW	3 cut(s)	230, 679, 1059
TfiI	GAWTC	3 cut(s)	829, 902, 964
Tru1I	TTAA	4 cut(s)	168, 591, 710, 1069
Tru9I	TTAA	4 cut(s)	168, 591, 710, 1069
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	3 cut(s)	290, 293, 507
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	4 cut(s)	609, 618, 651, 855
VneI	GTGCAC	1 cut(s)	391
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	982
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	2 cut(s)	99, 804
ZrmI	AGTACT	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.