Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003329

Physical Location & Seq

Genomic Coordinates Reverse (-)

14223556 .. 14226024

Gene Structure 2469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG164100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGACATTAAGGAGGCAGAGCGGGTAGTGATAGCTAAACCTGTTGCTTCAAGGCCTACTTGTTCCAGCTTTAAGTCATTCACTGAGCTTCTCACAGGTGCTATCGATGCATCACCCTCTAATGGAAACTTCAATACTAGCCAGCAACAACCACAATCATCAGTTGGGGTTGGAGTGGTTCTACATCCAAACCGTGAAAAATGCTTTAAAACCCAACTTATCTCCAACCTCTACCAGAAAAGTCCATCATGTGCTGAGACATGCCAGAGTACAGAACCAGTAAAGATAGTACCACAAAATATGGAAGAGGATGCAAAAAATATACCAGCTGCAGCCAATAGTGATAGGCCTTCTTATGATGGATATAATTGGAGAAAATATGGACAAAAGCAAGTCAAAGGAAGTGACTATCCGCGAAGTTATTACAAGTGCACACATCCAAATTGTCCTGTGAAAAAGAAGGTTGAGAGATCTTTGGATGGGCAGATTGCTGAGATTGTATACAAGGGAGAACACAACCACTCAAAGCCTCAGCCTCCAAAGCGCAGCTCCTCTGGGACGCAAGGGTCAGGATTTGCATCTGATGCAACTGGTCAAGATAACAACACCCGGTTATGGAATAGTCATCTTAATGAAAAGAATGAAGGTTCTGAAGGTAGAGTAGAGGATCAGAATGAAGTTGGAGTACCTGTGCATTCTTATCAAAGCAAATCCATAGTACATTATGATCCACTTGCAACTGGAGCATTAAATGCTGGAGGTGCAACTCCTGATAATTCTTGTGGAGTCAGCGGAGAATGCGAGGAAGCAAGCAAGGGAGTTGAAGCAGAGGATTATGAGCCTAGAAGTAAGAGAAGAAAAAGTGAGAATCAATCAAATGAAGTAGGCATATTGGGGGAAGTCATGCAAGAACCTCGTGTTGTGGTGCAGAGTTCTGCAGATTCTGAGATTACAGGTGATGGCTTCCGCTGGAGGAAATATGGGCAGAAGGTTGTAAAGGGGAATCCATATCCCAGAAGTTACTACAGATGCACCAGTGTCAAATGCAGTGTGCGTAAGCATGTGGAAAGAGTCTCAGAGGATCCGAAAGCCTTTATCACAACATACGAGGGAAAGCACAACCATGACATGCCACTGAGGACCTCAAACCCAGGAGCATCATCAGAAAAGGATACACAGCCCCCCCCTACAAGTAAAGAAAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009957 GO:0009987 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045165 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

402

Amino Acids

44.29

Weight (kDa)

8.38

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	120 - 174	1.4e-26	WRKY DNA -binding domain
WRKY	PF03106	320 - 376	3.1e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37260 AT2G37260 AT2G37260
fragaria_vesca	FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050
malus_domestica	MD04G1112800.v1.1 MD04G1113100.v1.1 MD12G1128800.v1.1 MD12G1129000.v1.1
prunus_persica	Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1
pyrus_communis	pycom04g10230 pycom12g12530
rosa_chinensis	RchiOBHm_Chr3g0468221
rosa_laevigata	RLG00000024440
rosa_multiflora	Rmu_sc0004524.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412890
rosa_rugosa	Rorug03G0094300 Rorug03G0094400 Rorug03G0094500 Rorug03G0094600 Rorug03G0094600
rosa_samantha	Rh3AG142000 Rh3BG163400 Rh3DG164100
rosa_wichuraiana	Rw3G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AccBSI	CCGCTC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	501
AccII	CGCG	1 cut(s)	415
AciI	CCGC	4 cut(s)	22, 413, 792, 967
AclWI	GGATC	4 cut(s)	675, 722, 1076, 1089
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	4 cut(s)	271, 291, 687, 720
AfiI	CCNNNNNNNGG	2 cut(s)	122, 615
AgsI	TTSAA	3 cut(s)	51, 133, 824
AjnI	CCWGG	1 cut(s)	1150
AluBI	AGCT	5 cut(s)	35, 69, 88, 329, 549
AluI	AGCT	5 cut(s)	35, 69, 88, 329, 549
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	2 cut(s)	251, 1078
Alw44I	GTGCAC	1 cut(s)	430
AlwI	GGATC	4 cut(s)	675, 722, 1076, 1089
AlwNI	CAGNNNCTG	1 cut(s)	944
AoxI	GGCC	2 cut(s)	53, 347
ApaLI	GTGCAC	1 cut(s)	430
ApeKI	GCWGC	3 cut(s)	329, 332, 546
AspLEI	GCGC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	1140
AsuC2I	CCSGG	1 cut(s)	610
AsuHPI	GGTGA	2 cut(s)	105, 968
AvaII	GGWCC	1 cut(s)	1140
BaeGI	GKGCMC	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	1081
BarI	GAAGNNNNNNTAC	2 cut(s)	669, 701
BauI	CACGAG	1 cut(s)	915
Bbv12I	GWGCWC	1 cut(s)	434
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	316, 344, 558
BccI	CCATC	4 cut(s)	253, 353, 473, 953
BcgI	CGANNNNNNTGC	2 cut(s)	896, 930
BciT130I	CCWGG	1 cut(s)	1152
BciVI	GTATCC	1 cut(s)	1165
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	251, 1078
BfaI	CTAG	2 cut(s)	138, 843
BfmI	CTRYAG	3 cut(s)	330, 936, 1024
BfuI	GTATCC	1 cut(s)	1165
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	3 cut(s)	330, 333, 547
BlsI	GCNGC	3 cut(s)	331, 334, 548
Bme1390I	CCNGG	2 cut(s)	610, 1152
Bme18I	GGWCC	1 cut(s)	1140
BmgT120I	GGNCC	1 cut(s)	1140
BmiI	GGNNCC	1 cut(s)	1083
BmrFI	CCNGG	2 cut(s)	610, 1152
BmsI	GCATC	7 cut(s)	97, 119, 301, 574, 587, 1019, 1166
BpmI	CTGGAG	3 cut(s)	762, 777, 991
Bpu10I	CCTNAGC	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	610
Bsa29I	ATCGAT	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	577
BsaJI	CCNNGG	1 cut(s)	1150
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 615
Bse1I	ACTGG	4 cut(s)	278, 595, 745, 1035
Bse8I	GATNNNNATC	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	1152
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	1150
BseGI	GGATG	4 cut(s)	184, 316, 436, 484
BseJI	GATNNNNATC	1 cut(s)	577
BseLI	CCNNNNNNNGG	2 cut(s)	122, 615
BseMII	CTCAG	7 cut(s)	75, 246, 483, 545, 936, 1089, 1127
BseNI	ACTGG	4 cut(s)	278, 595, 745, 1035
BseRI	GAGGAG	1 cut(s)	541
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	316, 344, 558
BsgI	GTGCAG	1 cut(s)	947
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	55, 349
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	2 cut(s)	122, 615
BsmAI	GTCTC	2 cut(s)	251, 1078
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	2 cut(s)	694, 803
BsnI	GGCC	2 cut(s)	55, 349
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	470, 667, 727, 1081
BspACI	CCGC	4 cut(s)	22, 413, 792, 967
BspANI	GGCC	2 cut(s)	55, 349
BspCNI	CTCAG	7 cut(s)	76, 247, 484, 544, 937, 1088, 1128
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	1083
BspMAI	CTGCAG	2 cut(s)	334, 940
BspPI	GGATC	4 cut(s)	675, 722, 1076, 1089
BsrBI	CCGCTC	1 cut(s)	22
BsrI	ACTGG	4 cut(s)	278, 595, 745, 1035
BssECI	CCNNGG	1 cut(s)	1150
BssMI	GATC	4 cut(s)	470, 667, 727, 1081
BssNAI	GTATAC	1 cut(s)	502
BssSI	CACGAG	1 cut(s)	915
Bst1107I	GTATAC	1 cut(s)	502
Bst2BI	CACGAG	1 cut(s)	915
Bst2UI	CCWGG	1 cut(s)	1152
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	300
BstAPI	GCANNNNNTGC	2 cut(s)	584, 752
BstC8I	GCNNGC	2 cut(s)	143, 811
BstDEI	CTNAG	7 cut(s)	84, 255, 492, 531, 945, 1075, 1136
BstF5I	GGATG	4 cut(s)	184, 316, 436, 484
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	4 cut(s)	473, 670, 730, 1084
BstMAI	GTCTC	2 cut(s)	251, 1078
BstMBI	GATC	4 cut(s)	470, 667, 727, 1081
BstMWI	GCNNNNNNNGC	7 cut(s)	107, 541, 584, 743, 752, 761, 798
BstNI	CCWGG	1 cut(s)	1152
BstNSI	RCATGY	3 cut(s)	264, 1064, 1132
BstSCI	CCNGG	2 cut(s)	608, 1150
BstSFI	CTRYAG	3 cut(s)	330, 936, 1024
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	3 cut(s)	316, 344, 558
BstX2I	RGATCY	2 cut(s)	470, 1081
BstYI	RGATCY	2 cut(s)	470, 1081
BstZ17I	GTATAC	1 cut(s)	502
Bsu15I	ATCGAT	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	1165
BsuRI	GGCC	2 cut(s)	55, 349
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	4 cut(s)	184, 316, 436, 484
BtsI	GCAGTG	1 cut(s)	1054
BtsIMutI	CAGTG	4 cut(s)	81, 1042, 1054, 1133
Cac8I	GCNNGC	2 cut(s)	143, 811
CaiI	CAGNNNCTG	1 cut(s)	944
CfoI	GCGC	1 cut(s)	546
Cfr13I	GGNCC	1 cut(s)	1140
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	4 cut(s)	270, 290, 686, 719
CviAII	CATG	7 cut(s)	249, 261, 904, 1061, 1124, 1129, 1206
CviQI	GTAC	4 cut(s)	270, 290, 686, 719
DdeI	CTNAG	7 cut(s)	84, 255, 492, 531, 945, 1075, 1136
DpnI	GATC	4 cut(s)	472, 669, 729, 1083
DpnII	GATC	4 cut(s)	470, 667, 727, 1081
DraI	TTTAAA	1 cut(s)	208
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco147I	AGGCCT	2 cut(s)	55, 349
Eco47I	GGWCC	1 cut(s)	1140
Eco57I	CTGAAG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	1140
EcoRII	CCWGG	1 cut(s)	1150
EcoT22I	ATGCAT	1 cut(s)	112
FaeI	CATG	7 cut(s)	252, 264, 907, 1064, 1127, 1132, 1209
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	7 cut(s)	248, 260, 903, 1060, 1123, 1128, 1205
FauI	CCCGC	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	3 cut(s)	330, 333, 547
FokI	GGATG	4 cut(s)	171, 323, 423, 491
Fsp4HI	GCNGC	3 cut(s)	330, 333, 547
FspBI	CTAG	2 cut(s)	138, 843
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	3 cut(s)	330, 333, 547
GsuI	CTGGAG	3 cut(s)	762, 777, 991
HaeIII	GGCC	2 cut(s)	55, 349
HapII	CCGG	1 cut(s)	610
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	7 cut(s)	252, 264, 907, 1064, 1127, 1132, 1209
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HinfI	GANTC	5 cut(s)	786, 868, 941, 1003, 1071
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	2 cut(s)	105, 968
Hpy166II	GTNNAC	2 cut(s)	432, 502
Hpy188I	TCNGA	7 cut(s)	583, 652, 672, 946, 1078, 1086, 1165
Hpy188III	TCNNGA	3 cut(s)	570, 596, 770
Hpy8I	GTNNAC	2 cut(s)	432, 502
HpyAV	CCTTC	5 cut(s)	360, 454, 638, 647, 982
HpyCH4III	ACNGT	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	7 cut(s)	107, 541, 584, 743, 752, 761, 798
HpyF3I	CTNAG	7 cut(s)	84, 255, 492, 531, 945, 1075, 1136
Hsp92II	CATG	7 cut(s)	252, 264, 907, 1064, 1127, 1132, 1209
HspAI	GCGC	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	470, 667, 727, 1081
LmnI	GCTCC	3 cut(s)	554, 743, 1154
Lsp1109I	GCAGC	3 cut(s)	316, 344, 558
LweI	GCATC	7 cut(s)	97, 119, 301, 574, 587, 1019, 1166
MaeI	CTAG	2 cut(s)	138, 843
MaeIII	GTNAC	2 cut(s)	404, 1019
MalI	GATC	4 cut(s)	472, 669, 729, 1083
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	4 cut(s)	470, 667, 727, 1081
MboII	GAAGA	2 cut(s)	317, 867
MflI	RGATCY	2 cut(s)	470, 1081
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	3 cut(s)	367, 442, 775
MlyI	GAGTC	2 cut(s)	795, 1080
MmeI	TCCRAC	3 cut(s)	151, 249, 661
Mph1103I	ATGCAT	1 cut(s)	112
MseI	TTAA	5 cut(s)	9, 72, 207, 630, 749
MslI	CAYNNNNRTG	2 cut(s)	630, 1122
MspA1I	CMGCKG	3 cut(s)	329, 792, 969
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	2 cut(s)	610, 1152
Mva1269I	GAATGC	2 cut(s)	694, 803
MvaI	CCWGG	1 cut(s)	1152
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	7 cut(s)	107, 541, 584, 743, 752, 761, 798
NciI	CCSGG	1 cut(s)	610
NdeII	GATC	4 cut(s)	470, 667, 727, 1081
NlaIII	CATG	7 cut(s)	252, 264, 907, 1064, 1127, 1132, 1209
NlaIV	GGNNCC	1 cut(s)	1083
NmuCI	GTSAC	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	3 cut(s)	264, 1064, 1132
PceI	AGGCCT	2 cut(s)	55, 349
PctI	GAATGC	2 cut(s)	694, 803
PfeI	GAWTC	3 cut(s)	868, 941, 1003
PkrI	GCNGC	3 cut(s)	331, 334, 548
PleI	GAGTC	2 cut(s)	794, 1079
PpsI	GAGTC	2 cut(s)	794, 1079
PpuMI	RGGWCCY	1 cut(s)	1140
Psp5II	RGGWCCY	1 cut(s)	1140
Psp6I	CCWGG	1 cut(s)	1150
PspGI	CCWGG	1 cut(s)	1150
PspN4I	GGNNCC	1 cut(s)	1083
PspPI	GGNCC	1 cut(s)	1140
PspPPI	RGGWCCY	1 cut(s)	1140
PstI	CTGCAG	2 cut(s)	334, 940
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	2 cut(s)	470, 1081
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	4 cut(s)	271, 291, 687, 720
RsaNI	GTAC	4 cut(s)	270, 290, 686, 719
RseI	CAYNNNNRTG	2 cut(s)	630, 1122
SaqAI	TTAA	5 cut(s)	9, 72, 207, 630, 749
SatI	GCNGC	3 cut(s)	330, 333, 547
Sau3AI	GATC	4 cut(s)	470, 667, 727, 1081
Sau96I	GGNCC	1 cut(s)	1140
SchI	GAGTC	2 cut(s)	795, 1080
ScrFI	CCNGG	2 cut(s)	610, 1152
SduI	GDGCHC	1 cut(s)	434
SfaNI	GCATC	7 cut(s)	97, 119, 301, 574, 587, 1019, 1166
SfcI	CTRYAG	3 cut(s)	330, 936, 1024
SinI	GGWCC	1 cut(s)	1140
SmiMI	CAYNNNNRTG	2 cut(s)	630, 1122
Sse9I	AATT	3 cut(s)	367, 442, 775
SseBI	AGGCCT	2 cut(s)	55, 349
SsiI	CCGC	4 cut(s)	22, 413, 792, 967
SspMI	CTAG	2 cut(s)	138, 843
StuI	AGGCCT	2 cut(s)	55, 349
StyD4I	CCNGG	2 cut(s)	608, 1150
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	367, 442, 775
TatI	WGTACW	2 cut(s)	269, 718
TfiI	GAWTC	3 cut(s)	868, 941, 1003
Tru1I	TTAA	5 cut(s)	9, 72, 207, 630, 749
Tru9I	TTAA	5 cut(s)	9, 72, 207, 630, 749
TscAI	CASTG	4 cut(s)	88, 1042, 1054, 1140
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	3 cut(s)	329, 332, 546
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	4 cut(s)	648, 657, 690, 894
TspRI	CASTG	4 cut(s)	88, 1042, 1054, 1140
VneI	GTGCAC	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	1140
XceI	RCATGY	3 cut(s)	264, 1064, 1132
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	2 cut(s)	138, 843
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.