Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003329

Physical Location & Seq

Genomic Coordinates Reverse (-)

19827951 .. 19828792

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1112800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACGTGTGATGGCTTCCGCTGGAGGAAGTACGGTCAGAAAGTTGTTCAGGGAAATCCATATCCCAGAAGTTACTACAGATGTACCAGTCTCAAATGCAGCGTGCGCAAGCATGTCGAAACAGTCTCGGATGATCCCAAAGCTTTCATCACCACGTACGAGGGAAAGCACAACCACGACAAGCCACTAAGGAACATGAACGCAGGATCATCTGAGAAGGATACAACAACTAAAGAAAAGCCACGACTGAGTGACAACATCACATTCAAACTTTGGCATCAAACTGTTTCAACCCCATGTTTGTCTGACAAAAATGTCATATGGGCTCAGAGGAAAAAACACACACCAAAAGTAACTGTTGCAGTGATTCTGATTCCCGCCTTGGATGCTCTGCTCTGCTATGCGATGCCAATCATTTCACTTGGGAATCTCTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009957 GO:0009987 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045165 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

147

Amino Acids

16.66

Weight (kDa)

9.6

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	4 - 60	5.7e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37260 AT2G37260 AT2G37260
fragaria_vesca	FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050
malus_domestica	MD04G1112800.v1.1 MD04G1113100.v1.1 MD12G1128800.v1.1 MD12G1129000.v1.1
prunus_persica	Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1
pyrus_communis	pycom04g10230 pycom12g12530
rosa_chinensis	RchiOBHm_Chr3g0468221
rosa_laevigata	RLG00000024440
rosa_multiflora	Rmu_sc0004524.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412890
rosa_rugosa	Rorug03G0094300 Rorug03G0094400 Rorug03G0094500 Rorug03G0094600 Rorug03G0094600
rosa_samantha	Rh3AG142000 Rh3BG163400 Rh3DG164100
rosa_wichuraiana	Rw3G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc16I	TGCGCA	1 cut(s)	107
AciI	CCGC	2 cut(s)	19, 378
AclWI	GGATC	2 cut(s)	128, 214
AfaI	GTAC	3 cut(s)	32, 85, 158
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	268, 291
AjiI	CACGTC	1 cut(s)	6
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	2 cut(s)	95, 130
AlwI	GGATC	2 cut(s)	128, 214
ApeKI	GCWGC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	142
BaeI	ACNNNNGTAYC	2 cut(s)	67, 100
BanII	GRGCYC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	5
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciVI	GTATCC	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	95, 130
BfmI	CTRYAG	1 cut(s)	76
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
BmgBI	CACGTC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	286, 376, 396
BpmI	CTGGAG	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	136, 391
BseJI	GATNNNNATC	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	204, 239, 341
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	111
BsiWI	CGTACG	1 cut(s)	156
BsmAI	GTCTC	2 cut(s)	95, 130
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	133, 206
BspACI	CCGC	2 cut(s)	19, 378
BspCNI	CTCAG	3 cut(s)	205, 240, 340
BspPI	GGATC	2 cut(s)	128, 214
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	2 cut(s)	133, 206
BssT1I	CCWWGG	1 cut(s)	381
Bst4CI	ACNGT	4 cut(s)	35, 124, 286, 358
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	104, 110
BstDEI	CTNAG	4 cut(s)	188, 213, 248, 327
BstF5I	GGATG	2 cut(s)	136, 391
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	2 cut(s)	136, 209
BstMAI	GTCTC	2 cut(s)	95, 130
BstMBI	GATC	2 cut(s)	133, 206
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 386
BstNSI	RCATGY	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	214
BtgZI	GCGATG	1 cut(s)	419
BtrI	CACGTC	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	136, 391
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	104, 110
CfoI	GCGC	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	31, 84, 157
CviAII	CATG	3 cut(s)	113, 196, 297
CviJI	RGCY	5 cut(s)	15, 143, 184, 241, 326
CviKI_1	RGCY	5 cut(s)	15, 143, 184, 241, 326
CviQI	GTAC	3 cut(s)	31, 84, 157
DdeI	CTNAG	4 cut(s)	188, 213, 248, 327
DpnI	GATC	2 cut(s)	135, 208
DpnII	GATC	2 cut(s)	133, 206
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	116, 199, 300
FaiI	YATR	7 cut(s)	61, 114, 197, 298, 320, 322, 402
FatI	CATG	3 cut(s)	112, 195, 296
FauI	CCCGC	1 cut(s)	385
FauNDI	CATATG	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	2 cut(s)	143, 398
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	100
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	116, 199, 300
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	3 cut(s)	367, 373, 427
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	6 cut(s)	39, 130, 214, 307, 330, 372
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	4 cut(s)	35, 124, 286, 358
HpyCH4IV	ACGT	2 cut(s)	5, 155
HpyCH4V	TGCA	2 cut(s)	99, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 386
HpyF3I	CTNAG	4 cut(s)	188, 213, 248, 327
HpySE526I	ACGT	2 cut(s)	5, 155
Hsp92II	CATG	3 cut(s)	116, 199, 300
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	133, 206
LpnPI	CCDG	5 cut(s)	7, 35, 79, 100, 189
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	3 cut(s)	286, 376, 396
MaeII	ACGT	2 cut(s)	5, 155
MaeIII	GTNAC	3 cut(s)	71, 251, 352
MalI	GATC	2 cut(s)	135, 208
MboI	GATC	2 cut(s)	133, 206
MhlI	GDGCHC	1 cut(s)	328
MnlI	CCTC	3 cut(s)	18, 154, 324
MspA1I	CMGCKG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	105, 386
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	2 cut(s)	133, 206
NlaIII	CATG	3 cut(s)	116, 199, 300
NmuCI	GTSAC	1 cut(s)	251
NsbI	TGCGCA	1 cut(s)	107
NspI	RCATGY	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	367, 373, 427
Pfl23II	CGTACG	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	156
PspLI	CGTACG	1 cut(s)	156
RsaI	GTAC	3 cut(s)	32, 85, 158
RsaNI	GTAC	3 cut(s)	31, 84, 157
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	2 cut(s)	133, 206
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	3 cut(s)	8, 145, 158
SfaNI	GCATC	3 cut(s)	286, 376, 396
SfcI	CTRYAG	1 cut(s)	76
SsiI	CCGC	2 cut(s)	19, 378
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	4 cut(s)	35, 124, 286, 358
TaiI	ACGT	2 cut(s)	8, 158
TaqI	TCGA	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	367, 373, 427
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	136, 212
TspRI	CASTG	1 cut(s)	369
XceI	RCATGY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.