Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003329

Physical Location & Seq

Genomic Coordinates Forward (+)

7376356 .. 7378894

Gene Structure 2539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0094300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGGCTTCTTTACCGAAGTCTCGCGATGCTAGTGGTTTTGATATGGTTATCACGGCTGGCTCATCTCTCGGCACAGTCGTCCAGTGGCCAAGCACCTGCTCTTGATGTGCTTCTTCAAGATTATGCCTACAGGGCCTTTGTACATCCCAAGACTGGAGTTCCCTATGATGCTCAGGTTCCTTCGAATTTGAGTGGAATTCAGATTGCAGCTTTGAGGCTCAGGAGTGGTAGCTTGTACAGGAGAGGTGTTGTGTACAAAGAGTTTGAGTTCCCAGTAGGAGTCAATGAGAGTCCATATGCGGAGAGGCTTGTTCTGGTGTACCAGAACTTAGGCAATTGGTCATCGAAGTATTATCCATTACCAGGTTATTCATACTTAGCTCCAGTGTTGGGTCTCCTTGCTTATGATGCTATCGATTTATCAGCGAAAAATTTACCATACTTGGATATCACTGCAACTGTTGATCCCATAAAGATCAAATTTCAGAATGTGAAACCGACCCCTGATGGCACCGTGGCGAAGTGTGTTACTTTTGACTTAGATGGTTCTGTCAATTTCAGCAATGTGGGATCAGGCAATGCATGTTCAGCTTTCAAACAGGGGCACTTCGCTATAGTGGTTGCGTCCATTGCTCCTTCTCCATCACCAGTCACCTCTGGAAGTCCCCCGACTCCTACTCCTGGTGGTCGAGGAAAGAAGAAGAGTAATTCAAAAACGTGGATAATTGTTGGGTCTGTGCTCGGTGGATTAGCATTGTTGGCATTGTTGGCATTCCTGGTACTCTGGGGGCGTAAATACAGGGAAAGGAAGCATTTGGAAGAGATGGAGAAAGCTGCAGATGTAGGAGAAGCTTTGCATATGACAACAGTTGGAGATACAAAAGCACCTTCAGCAATGGTTACTCGAACACAACCGACAATTGAGAGTGAATATGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009957 GO:0009987 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045165 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

314

Amino Acids

33.91

Weight (kDa)

9.22

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1191	PF06697	32 - 208	1.2e-72	Protein of unknown function (DUF1191)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37260 AT2G37260 AT2G37260
fragaria_vesca	FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050
malus_domestica	MD04G1112800.v1.1 MD04G1113100.v1.1 MD12G1128800.v1.1 MD12G1129000.v1.1
prunus_persica	Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1
pyrus_communis	pycom04g10230 pycom12g12530
rosa_chinensis	RchiOBHm_Chr3g0468221
rosa_laevigata	RLG00000024440
rosa_multiflora	Rmu_sc0004524.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412890
rosa_rugosa	Rorug03G0094300 Rorug03G0094400 Rorug03G0094500 Rorug03G0094600 Rorug03G0094600
rosa_samantha	Rh3AG142000 Rh3BG163400 Rh3DG164100
rosa_wichuraiana	Rw3G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	106
Acc36I	ACCTGC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	512
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	2 cut(s)	461, 580
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	4 cut(s)	187, 198, 433, 482
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	5 cut(s)	144, 239, 257, 323, 783
AfiI	CCNNNNNNNGG	4 cut(s)	155, 365, 392, 683
AgsI	TTSAA	3 cut(s)	119, 598, 714
AjnI	CCWGG	3 cut(s)	364, 682, 777
AluBI	AGCT	6 cut(s)	212, 234, 383, 593, 836, 854
AluI	AGCT	6 cut(s)	212, 234, 383, 593, 836, 854
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	2 cut(s)	26, 401
AlwI	GGATC	2 cut(s)	461, 580
AoxI	GGCC	2 cut(s)	88, 135
ApeKI	GCWGC	2 cut(s)	209, 836
ApoI	RAATTY	4 cut(s)	187, 198, 433, 482
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	639, 646
AsuII	TTCGAA	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	2 cut(s)	221, 823
BccI	CCATC	4 cut(s)	503, 539, 652, 820
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	3 cut(s)	366, 684, 779
BcoDI	GTCTC	2 cut(s)	26, 401
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	3 cut(s)	130, 615, 837
BfuAI	ACCTGC	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	210, 837
BlsI	GCNGC	2 cut(s)	211, 838
Bme1390I	CCNGG	3 cut(s)	366, 684, 779
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	180, 514
BmrFI	CCNGG	3 cut(s)	366, 684, 779
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	3 cut(s)	18, 160, 400
BmuI	ACTGGG	1 cut(s)	269
BpmI	CTGGAG	2 cut(s)	177, 369
Bpu10I	CCTNAGC	2 cut(s)	174, 221
Bpu14I	TTCGAA	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	516
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 365, 392, 683
Bse1I	ACTGG	5 cut(s)	84, 160, 275, 386, 650
Bse3DI	GCAATG	4 cut(s)	571, 586, 630, 903
BseBI	CCWGG	3 cut(s)	366, 684, 779
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	4 cut(s)	155, 365, 392, 683
BseMI	GCAATG	4 cut(s)	571, 586, 630, 903
BseMII	CTCAG	2 cut(s)	188, 235
BseNI	ACTGG	5 cut(s)	84, 160, 275, 386, 650
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	2 cut(s)	221, 823
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	90, 137
BshNI	GGYRCC	1 cut(s)	512
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	4 cut(s)	155, 365, 392, 683
BsmAI	GTCTC	2 cut(s)	26, 401
BsmFI	GGGAC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	773
BsnI	GGCC	2 cut(s)	90, 137
Bso31I	GGTCTC	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	609, 744
Bsp1407I	TGTACA	3 cut(s)	142, 237, 255
Bsp143I	GATC	3 cut(s)	466, 477, 572
Bsp68I	TCGCGA	1 cut(s)	26
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	2 cut(s)	90, 137
BspCNI	CTCAG	2 cut(s)	187, 234
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	180, 514
BspMAI	CTGCAG	1 cut(s)	841
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	2 cut(s)	461, 580
BspT104I	TTCGAA	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	401
BsrDI	GCAATG	4 cut(s)	571, 586, 630, 903
BsrGI	TGTACA	3 cut(s)	142, 237, 255
BsrI	ACTGG	5 cut(s)	84, 160, 275, 386, 650
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	3 cut(s)	466, 477, 572
Bst2UI	CCWGG	3 cut(s)	366, 684, 779
Bst4CI	ACNGT	4 cut(s)	78, 463, 517, 871
Bst6I	CTCTTC	2 cut(s)	698, 816
BstAUI	TGTACA	3 cut(s)	142, 237, 255
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	5 cut(s)	174, 221, 331, 379, 541
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	3 cut(s)	469, 480, 575
BstMAI	GTCTC	2 cut(s)	26, 401
BstMBI	GATC	3 cut(s)	466, 477, 572
BstMWI	GCNNNNNNNGC	7 cut(s)	134, 410, 590, 632, 761, 770, 893
BstNI	CCWGG	3 cut(s)	366, 684, 779
BstNSI	RCATGY	1 cut(s)	588
BstSCI	CCNGG	3 cut(s)	364, 682, 777
BstSFI	CTRYAG	3 cut(s)	130, 615, 837
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	221, 823
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	90, 137
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	516
BtgZI	GCGATG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	3 cut(s)	91, 393, 453
BtuMI	TCGCGA	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	135
ClaI	ATCGAT	1 cut(s)	417
CseI	GACGC	1 cut(s)	615
CsiI	ACCWGGT	1 cut(s)	364
Csp6I	GTAC	5 cut(s)	143, 238, 256, 322, 782
CviAII	CATG	1 cut(s)	585
CviQI	GTAC	5 cut(s)	143, 238, 256, 322, 782
DdeI	CTNAG	5 cut(s)	174, 221, 331, 379, 541
DpnI	GATC	3 cut(s)	468, 479, 574
DpnII	GATC	3 cut(s)	466, 477, 572
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	698, 816
EarI	CTCTTC	2 cut(s)	698, 816
Eco31I	GGTCTC	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	876
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	3 cut(s)	364, 682, 777
EcoRV	GATATC	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	586
FaeI	CATG	1 cut(s)	588
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	1 cut(s)	584
FauNDI	CATATG	2 cut(s)	298, 861
Fnu4HI	GCNGC	2 cut(s)	210, 837
FokI	GGATG	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	210, 837
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	2 cut(s)	210, 837
GsuI	CTGGAG	2 cut(s)	177, 369
HaeIII	GGCC	2 cut(s)	90, 137
HgaI	GACGC	1 cut(s)	615
Hin1II	CATG	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	852
HinfI	GANTC	3 cut(s)	282, 292, 673
HphI	GGTGA	2 cut(s)	639, 646
Hpy166II	GTNNAC	2 cut(s)	256, 322
Hpy188I	TCNGA	2 cut(s)	204, 489
Hpy188III	TCNNGA	5 cut(s)	25, 104, 119, 223, 660
Hpy8I	GTNNAC	2 cut(s)	256, 322
HpyAV	CCTTC	3 cut(s)	192, 648, 900
HpyCH4III	ACNGT	4 cut(s)	78, 463, 517, 871
HpyCH4IV	ACGT	1 cut(s)	719
HpyCH4V	TGCA	5 cut(s)	209, 458, 584, 839, 859
HpyF10VI	GCNNNNNNNGC	7 cut(s)	134, 410, 590, 632, 761, 770, 893
HpyF3I	CTNAG	5 cut(s)	174, 221, 331, 379, 541
HpySE526I	ACGT	1 cut(s)	719
Hsp92II	CATG	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	466, 477, 572
LmnI	GCTCC	2 cut(s)	388, 640
Lsp1109I	GCAGC	2 cut(s)	221, 823
LweI	GCATC	3 cut(s)	18, 160, 400
MabI	ACCWGGT	1 cut(s)	364
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	719
MaeIII	GTNAC	3 cut(s)	529, 652, 901
MalI	GATC	3 cut(s)	468, 479, 574
MboI	GATC	3 cut(s)	466, 477, 572
MboII	GAAGA	4 cut(s)	107, 712, 715, 833
MfeI	CAATTG	2 cut(s)	337, 921
MhlI	GDGCHC	2 cut(s)	609, 744
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	9 cut(s)	187, 198, 337, 433, 482, 556, 709, 726, 921
MluNI	TGGCCA	1 cut(s)	90
MlyI	GAGTC	3 cut(s)	291, 301, 667
MmeI	TCCRAC	1 cut(s)	853
MnlI	CCTC	5 cut(s)	210, 239, 300, 667, 686
Mox20I	TGGCCA	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	586
MscI	TGGCCA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	90
MspR9I	CCNGG	3 cut(s)	366, 684, 779
MunI	CAATTG	2 cut(s)	337, 921
Mva1269I	GAATGC	1 cut(s)	773
MvaI	CCWGG	3 cut(s)	366, 684, 779
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	7 cut(s)	134, 410, 590, 632, 761, 770, 893
NdeI	CATATG	2 cut(s)	298, 861
NdeII	GATC	3 cut(s)	466, 477, 572
NlaIII	CATG	1 cut(s)	588
NlaIV	GGNNCC	2 cut(s)	180, 514
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	652
NruI	TCGCGA	1 cut(s)	26
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	1 cut(s)	588
NspV	TTCGAA	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	1 cut(s)	773
PkrI	GCNGC	2 cut(s)	211, 838
PleI	GAGTC	3 cut(s)	290, 300, 667
PpsI	GAGTC	3 cut(s)	290, 300, 667
Psp6I	CCWGG	3 cut(s)	364, 682, 777
PspGI	CCWGG	3 cut(s)	364, 682, 777
PspN4I	GGNNCC	2 cut(s)	180, 514
PspPI	GGNCC	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	841
RruI	TCGCGA	1 cut(s)	26
RsaI	GTAC	5 cut(s)	144, 239, 257, 323, 783
RsaNI	GTAC	5 cut(s)	143, 238, 256, 322, 782
SatI	GCNGC	2 cut(s)	210, 837
Sau3AI	GATC	3 cut(s)	466, 477, 572
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	3 cut(s)	291, 301, 667
ScrFI	CCNGG	3 cut(s)	366, 684, 779
SduI	GDGCHC	2 cut(s)	609, 744
SexAI	ACCWGGT	1 cut(s)	364
SfaNI	GCATC	3 cut(s)	18, 160, 400
SfcI	CTRYAG	3 cut(s)	130, 615, 837
SfuI	TTCGAA	1 cut(s)	185
Sse9I	AATT	9 cut(s)	187, 198, 337, 433, 482, 556, 709, 726, 921
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	364, 682, 777
TaaI	ACNGT	4 cut(s)	78, 463, 517, 871
TaiI	ACGT	1 cut(s)	722
TaqI	TCGA	5 cut(s)	185, 347, 417, 691, 907
TasI	AATT	9 cut(s)	187, 198, 337, 433, 482, 556, 709, 726, 921
TatI	WGTACW	3 cut(s)	142, 237, 255
TscAI	CASTG	3 cut(s)	91, 393, 460
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	2 cut(s)	209, 836
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	3 cut(s)	91, 393, 460
XapI	RAATTY	4 cut(s)	187, 198, 433, 482
XceI	RCATGY	1 cut(s)	588
XspI	CTAG	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.