Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003329

Physical Location & Seq

Genomic Coordinates Forward (+)

24197923 .. 24203322

Gene Structure 5400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G244300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGATATTAAGGAGGCAGAGCGGGTAGTTATAGCTAAACCAGTTGCTTCAAGGCCTACTTGTTCAAGCTTTAGGTCCTTCACGGAGCTTCTTGCAGGAGCTATCGATGCCTCTCCTTCAAATATATCTTCTGAAACTGCTGTTCCTGCCATCAGACCAAAGACTGTGAGGTTCAAGCCAACGGTGAATCATGCTGTCTCTGGATTGGTTTCTTCCCAGGCAGAGATGTCTGGTACTGCACATAGTAATTCATCAGAGAAGATCTCAAAATCAGACAGCAGAGCAAGTGTGGTATACAAACCATTGGCAAAAGTTGTATCAAGGGCAACTGTTTCTGCCTTGGCAAATATGGGAAACTTCAATACCAGCCACCAATCGACACAATCATCAGTCGAGGCTGGTGTTCTACAGCAAAATCAAGATAAATGCTTTAGATCCCAACTTAGCCCAAATCTGCGCCATAATAATCCATCATGTGCTGAGACAAATCAGACAACAGAGCCTTTGAAGATAGCATCACAAAACGTGGAAGAGGATCCAAAACATATACCATCCACAGCCAATACTGATAGGCCTTCTTATGATGGGTATAATTGGAGAAAATATGGACAGAAGCAAGTCAAAGGAAGTGAGTACCCGCGAAGTTACTATAAGTGCACGCATCCAAATTGTCCTGTGAAAAAGAAGGTTGAGAGATCTTTGGATGGACAGATTGCTGAGATTGTCTACAAGGGTGAACACAACCACTCAAAGCCCCAACCTCCAAAGAAAAGCTCATCGGGGACGCAAGGGTTAGGCATAGCATCTGATGGAACTGGTCAAGATACCAACAACCGGTTATGGAATAGTCAACTTAATGAAAGGAATGAAGGTTCTGAAGGTAGAGTAGAGGATCAGAATGAAGTTGGACTACCTGTGCATTCTTATCAAAGTAAAGCTCCACTACTTTATGATCCTCTTGCAAGTGGAGGAATAAATGCGGGTGGTGGAACTCCTGATAATTCTTGTGGTCTTAGTGGAGAGTGTGAGGAAGGAAGCAAGGGACCTGAAGCAGAGGATTATGAACCTAGAAGTAAAAGAAGAAAAAGCGAGAATCAATCGAATGAAGGGGGCATATCAGGAGAAGGTGTGCCAGATCCCCGTGTTGTGGTGCAAAGTTCAGTAGATTCTGATATGACGGGTGATGGCTTCCGTTGGAGGAAATATGGGCAGAAGGTTGTTAAGGGAAATCCATATCCCAGAAGTTACTATAGATGCACCAGTCTCAAATGCAGTGTGCGTAAGCATGTCGAAAGAGTCTCAGACGATCCCAAAGCTTTTATCACAACATACGAGGGAAAGCACAACCATGACATGCCACTGAGGAACACAAACCCAGGAGCATCCGAAAAGGATGCACAAGCCCCCACAACCAAAGAAAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009957 GO:0009987 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045165 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

476

Amino Acids

51.74

Weight (kDa)

8.84

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37260 AT2G37260 AT2G37260
fragaria_vesca	FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050
malus_domestica	MD04G1112800.v1.1 MD04G1113100.v1.1 MD12G1128800.v1.1 MD12G1129000.v1.1
prunus_persica	Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1
pyrus_communis	pycom04g10230 pycom12g12530
rosa_chinensis	RchiOBHm_Chr3g0468221
rosa_laevigata	RLG00000024440
rosa_multiflora	Rmu_sc0004524.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412890
rosa_rugosa	Rorug03G0094300 Rorug03G0094400 Rorug03G0094500 Rorug03G0094600 Rorug03G0094600
rosa_samantha	Rh3AG142000 Rh3BG163400 Rh3DG164100
rosa_wichuraiana	Rw3G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	22
AccI	GTMKAC	2 cut(s)	294, 726
AccII	CGCG	1 cut(s)	640
AciI	CCGC	3 cut(s)	22, 638, 980
AclWI	GGATC	7 cut(s)	429, 530, 543, 900, 947, 1130, 1301
AcuI	CTGAAG	2 cut(s)	897, 1068
AfaI	GTAC	2 cut(s)	235, 635
AfiI	CCNNNNNNNGG	2 cut(s)	834, 1147
AgeI	ACCGGT	1 cut(s)	834
AgsI	TTSAA	6 cut(s)	51, 66, 120, 175, 361, 508
AjnI	CCWGG	2 cut(s)	216, 1375
AloI	GAACNNNNNNTCC	2 cut(s)	856, 888
AluBI	AGCT	7 cut(s)	35, 69, 88, 101, 774, 938, 1316
AluI	AGCT	7 cut(s)	35, 69, 88, 101, 774, 938, 1316
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	4 cut(s)	202, 476, 1268, 1303
Alw44I	GTGCAC	1 cut(s)	655
AlwI	GGATC	7 cut(s)	429, 530, 543, 900, 947, 1130, 1301
AoxI	GGCC	2 cut(s)	53, 572
ApaLI	GTGCAC	1 cut(s)	655
AsiGI	ACCGGT	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	75, 1043
AsuHPI	GGTGA	3 cut(s)	196, 746, 1193
AvaII	GGWCC	2 cut(s)	75, 1043
BaeGI	GKGCMC	1 cut(s)	659
BamHI	GGATCC	1 cut(s)	535
BarI	GAAGNNNNNNTAC	2 cut(s)	894, 926
Bbv12I	GWGCWC	1 cut(s)	659
BccI	CCATC	7 cut(s)	158, 478, 559, 578, 698, 803, 1178
BcgI	CGANNNNNNTGC	2 cut(s)	1376, 1410
BciT130I	CCWGG	2 cut(s)	218, 1377
BcoDI	GTCTC	4 cut(s)	202, 476, 1268, 1303
BfaI	CTAG	1 cut(s)	1068
BfmI	CTRYAG	2 cut(s)	407, 1249
BglII	AGATCT	2 cut(s)	261, 695
Bme1390I	CCNGG	2 cut(s)	218, 1377
Bme18I	GGWCC	2 cut(s)	75, 1043
BmgT120I	GGNCC	2 cut(s)	75, 1043
BmiI	GGNNCC	2 cut(s)	537, 1044
BmrFI	CCNGG	2 cut(s)	218, 1377
BmsI	GCATC	7 cut(s)	97, 524, 670, 812, 1244, 1384, 1391
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	216, 339, 1375
BsaWI	WCCGGW	1 cut(s)	834
BsaXI	ACNNNNNCTCC	2 cut(s)	1113, 1143
Bsc4I	CCNNNNNNNGG	2 cut(s)	834, 1147
Bse118I	RCCGGY	1 cut(s)	834
Bse1I	ACTGG	3 cut(s)	41, 820, 1260
BseBI	CCWGG	2 cut(s)	218, 1377
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	216, 339, 1375
BseGI	GGATG	5 cut(s)	551, 661, 709, 1382, 1399
BseLI	CCNNNNNNNGG	2 cut(s)	834, 1147
BseMII	CTCAG	4 cut(s)	471, 708, 1314, 1352
BseNI	ACTGG	3 cut(s)	41, 820, 1260
BseSI	GKGCMC	1 cut(s)	659
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	640
BshFI	GGCC	2 cut(s)	55, 574
BshTI	ACCGGT	1 cut(s)	834
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	835
BslFI	GGGAC	2 cut(s)	796, 1056
BslI	CCNNNNNNNGG	2 cut(s)	834, 1147
BsmAI	GTCTC	4 cut(s)	202, 476, 1268, 1303
BsmFI	GGGAC	2 cut(s)	796, 1056
BsmI	GAATGC	1 cut(s)	919
BsnI	GGCC	2 cut(s)	55, 574
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	8 cut(s)	261, 434, 535, 695, 892, 952, 1135, 1306
BspACI	CCGC	3 cut(s)	22, 638, 980
BspANI	GGCC	2 cut(s)	55, 574
BspCNI	CTCAG	4 cut(s)	472, 709, 1313, 1353
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	537, 1044
BspPI	GGATC	7 cut(s)	429, 530, 543, 900, 947, 1130, 1301
BsrBI	CCGCTC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	834
BsrI	ACTGG	3 cut(s)	41, 820, 1260
BssAI	RCCGGY	1 cut(s)	834
BssECI	CCNNGG	3 cut(s)	216, 339, 1375
BssMI	GATC	8 cut(s)	261, 434, 535, 695, 892, 952, 1135, 1306
BssNAI	GTATAC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	218, 1377
Bst4CI	ACNGT	3 cut(s)	166, 184, 331
Bst6I	CTCTTC	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	659
BstDEI	CTNAG	6 cut(s)	443, 480, 717, 1013, 1300, 1361
BstF5I	GGATG	5 cut(s)	551, 661, 709, 1382, 1399
BstFNI	CGCG	1 cut(s)	640
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	8 cut(s)	264, 437, 538, 698, 895, 955, 1138, 1309
BstMAI	GTCTC	4 cut(s)	202, 476, 1268, 1303
BstMBI	GATC	8 cut(s)	261, 434, 535, 695, 892, 952, 1135, 1306
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 146
BstNI	CCWGG	2 cut(s)	218, 1377
BstNSI	RCATGY	2 cut(s)	1289, 1357
BstSCI	CCNGG	2 cut(s)	216, 1375
BstSFI	CTRYAG	2 cut(s)	407, 1249
BstSLI	GKGCMC	1 cut(s)	659
BstUI	CGCG	1 cut(s)	640
BstX2I	RGATCY	5 cut(s)	261, 434, 535, 695, 1135
BstYI	RGATCY	5 cut(s)	261, 434, 535, 695, 1135
BstZ17I	GTATAC	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	55, 574
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	5 cut(s)	551, 661, 709, 1382, 1399
BtsI	GCAGTG	1 cut(s)	1279
BtsIMutI	CAGTG	2 cut(s)	1279, 1358
Cac8I	GCNNGC	1 cut(s)	659
CfoI	GCGC	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	834
Cfr13I	GGNCC	2 cut(s)	75, 1043
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	1 cut(s)	793
Csp6I	GTAC	2 cut(s)	234, 634
CspAI	ACCGGT	1 cut(s)	834
CviAII	CATG	6 cut(s)	191, 474, 1286, 1349, 1354, 1425
CviQI	GTAC	2 cut(s)	234, 634
DdeI	CTNAG	6 cut(s)	443, 480, 717, 1013, 1300, 1361
DpnI	GATC	8 cut(s)	263, 436, 537, 697, 894, 954, 1137, 1308
DpnII	GATC	8 cut(s)	261, 434, 535, 695, 892, 952, 1135, 1306
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	339
Eco147I	AGGCCT	2 cut(s)	55, 574
Eco47I	GGWCC	2 cut(s)	75, 1043
Eco57I	CTGAAG	2 cut(s)	897, 1068
EcoO109I	RGGNCCY	2 cut(s)	75, 1043
EcoRII	CCWGG	2 cut(s)	216, 1375
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	6 cut(s)	194, 477, 1289, 1352, 1357, 1428
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	2 cut(s)	796, 1056
FatI	CATG	6 cut(s)	190, 473, 1285, 1348, 1353, 1424
FauI	CCCGC	3 cut(s)	15, 645, 973
FblI	GTMKAC	2 cut(s)	294, 726
FokI	GGATG	5 cut(s)	538, 648, 716, 1369, 1406
FspBI	CTAG	1 cut(s)	1068
GlaI	GCGC	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	55, 574
HapII	CCGG	1 cut(s)	835
HgaI	GACGC	1 cut(s)	793
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	6 cut(s)	194, 477, 1289, 1352, 1357, 1428
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	851
HindII	GTYRAC	1 cut(s)	851
HindIII	AAGCTT	2 cut(s)	67, 1314
HinfI	GANTC	4 cut(s)	187, 1093, 1166, 1296
HpaII	CCGG	1 cut(s)	835
HphI	GGTGA	3 cut(s)	196, 746, 1193
Hpy166II	GTNNAC	5 cut(s)	295, 657, 727, 737, 851
Hpy188III	TCNNGA	5 cut(s)	201, 419, 821, 995, 1119
Hpy8I	GTNNAC	5 cut(s)	295, 657, 727, 737, 851
HpyCH4III	ACNGT	3 cut(s)	166, 184, 331
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	9 cut(s)	95, 239, 657, 919, 962, 1153, 1257, 1272, 1397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 146
HpyF3I	CTNAG	6 cut(s)	443, 480, 717, 1013, 1300, 1361
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	6 cut(s)	194, 477, 1289, 1352, 1357, 1428
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	8 cut(s)	261, 434, 535, 695, 892, 952, 1135, 1306
LmnI	GCTCC	4 cut(s)	85, 98, 943, 1379
LweI	GCATC	7 cut(s)	97, 524, 670, 812, 1244, 1384, 1391
MaeI	CTAG	1 cut(s)	1068
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	2 cut(s)	644, 1244
MalI	GATC	8 cut(s)	263, 436, 537, 697, 894, 954, 1137, 1308
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	8 cut(s)	261, 434, 535, 695, 892, 952, 1135, 1306
MboII	GAAGA	6 cut(s)	120, 204, 271, 520, 542, 1092
MflI	RGATCY	5 cut(s)	261, 434, 535, 695, 1135
MhlI	GDGCHC	1 cut(s)	659
MluCI	AATT	4 cut(s)	247, 592, 667, 1000
MlyI	GAGTC	1 cut(s)	1305
MmeI	TCCRAC	2 cut(s)	886, 1175
MseI	TTAA	3 cut(s)	9, 855, 1221
MslI	CAYNNNNRTG	1 cut(s)	1347
MspI	CCGG	1 cut(s)	835
MspR9I	CCNGG	2 cut(s)	218, 1377
Mva1269I	GAATGC	1 cut(s)	919
MvaI	CCWGG	2 cut(s)	218, 1377
MvnI	CGCG	1 cut(s)	640
MwoI	GCNNNNNNNGC	2 cut(s)	107, 146
NdeII	GATC	8 cut(s)	261, 434, 535, 695, 892, 952, 1135, 1306
NlaIII	CATG	6 cut(s)	194, 477, 1289, 1352, 1357, 1428
NlaIV	GGNNCC	2 cut(s)	537, 1044
NspI	RCATGY	2 cut(s)	1289, 1357
PceI	AGGCCT	2 cut(s)	55, 574
PctI	GAATGC	1 cut(s)	919
PfeI	GAWTC	3 cut(s)	187, 1093, 1166
PinAI	ACCGGT	1 cut(s)	834
PleI	GAGTC	1 cut(s)	1304
PpsI	GAGTC	1 cut(s)	1304
PpuMI	RGGWCCY	2 cut(s)	75, 1043
Psp5II	RGGWCCY	2 cut(s)	75, 1043
Psp6I	CCWGG	2 cut(s)	216, 1375
PspGI	CCWGG	2 cut(s)	216, 1375
PspN4I	GGNNCC	2 cut(s)	537, 1044
PspPI	GGNCC	2 cut(s)	75, 1043
PspPPI	RGGWCCY	2 cut(s)	75, 1043
PsuI	RGATCY	5 cut(s)	261, 434, 535, 695, 1135
RsaI	GTAC	2 cut(s)	235, 635
RsaNI	GTAC	2 cut(s)	234, 634
RseI	CAYNNNNRTG	1 cut(s)	1347
SaqAI	TTAA	3 cut(s)	9, 855, 1221
Sau3AI	GATC	8 cut(s)	261, 434, 535, 695, 892, 952, 1135, 1306
Sau96I	GGNCC	2 cut(s)	75, 1043
SchI	GAGTC	1 cut(s)	1305
ScrFI	CCNGG	2 cut(s)	218, 1377
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	7 cut(s)	97, 524, 670, 812, 1244, 1384, 1391
SfcI	CTRYAG	2 cut(s)	407, 1249
SinI	GGWCC	2 cut(s)	75, 1043
SmiMI	CAYNNNNRTG	1 cut(s)	1347
Sse9I	AATT	4 cut(s)	247, 592, 667, 1000
SseBI	AGGCCT	2 cut(s)	55, 574
SsiI	CCGC	3 cut(s)	22, 638, 980
SspMI	CTAG	1 cut(s)	1068
StuI	AGGCCT	2 cut(s)	55, 574
StyD4I	CCNGG	2 cut(s)	216, 1375
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	166, 184, 331
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	5 cut(s)	105, 377, 393, 1100, 1290
TasI	AATT	4 cut(s)	247, 592, 667, 1000
TfiI	GAWTC	3 cut(s)	187, 1093, 1166
Tru1I	TTAA	3 cut(s)	9, 855, 1221
Tru9I	TTAA	3 cut(s)	9, 855, 1221
TscAI	CASTG	2 cut(s)	1279, 1365
TspDTI	ATGAA	6 cut(s)	240, 873, 882, 915, 1077, 1119
TspGWI	ACGGA	2 cut(s)	98, 1181
TspRI	CASTG	2 cut(s)	1279, 1365
VneI	GTGCAC	1 cut(s)	655
VpaK11BI	GGWCC	2 cut(s)	75, 1043
XceI	RCATGY	2 cut(s)	1289, 1357
XmiI	GTMKAC	2 cut(s)	294, 726
XspI	CTAG	1 cut(s)	1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.