Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003329

Physical Location & Seq

Genomic Coordinates Reverse (-)

7384847 .. 7386546

Gene Structure 1700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0094500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCAGCCCTGTTGATATTTTGGACAATTTTCTTCCTTGGCATTCTGAGCCTGTTTACGAGATTGCTTAACCAGTTATGGCTCAAACCTAGAAGGATTCGATCAGTGCTGTGGAAGCAAGGCATCAGAGGTCCGCAGCCTTCATTTCTTTTCGGAAACACTGCCGAGATGGAGAAGATTCGGTCTACCGCCGATATCACCCAGAAAGCATCGAAAGGTGGGCATGTACAGCACGATTGGGCACCCTCCGTACACCCATTTCTTCATAAATGGGCAAACGAGTATGGTCCAGTATACATGTACTCCACAGGCAGCCAGCAACACCTTGTTGTAAGCGATCCACAGTTAATAAGAGAGCTTAGATCGCACAACTCCATGGATTTGGGTAGACCAACATATATGAATAAGAACTTGCAAGCTTTAACAGGTGATAGCTTTTTGGTCGCTAACGGAGAAAAGTGGGCTTACCAGAGGAAGATCATTGCCCCTGAATTTTTCCTTGACAACGTTAAGGACATGTTAGGTCTGATGGTGAAATCCACAACGACAACGATTAAGGCATGGGAGAAATCTATACAAGAAAGCGATTCGGGCATTGTGGATATGAGAATTGATGAGGATTTGAAGGCCATATCTAGAGAAGTCCTATCAAGAGCTTGCTTCGGTGGGTCTTACTCTAAAGGCAACCAGATTTTTGCAATTATTTCTGTTCTGGAAGAAGCCTTGTCCGAACCAAATGTGTTCTTTGGGTTTCTAAACTTGAGATTCTTTCCCACAGAGAATGACAAGAAGATAAAGAGTTTAAAGAAAGAGGTGGACGCTTTGATACTAAAATTAGTGAGGGATCGTCAGGTTGAAATGCGACGGAATGGTGCATCTCAAAATGACCTATTACAAATTATACTTGAAAGTGCTGCAAATAGTAGTGACATGCCTGCCCAACTTAAATCAGATAGATTTATTTTGGACACTTGTAAAAGTATGTACTTTGCAGGCGCTCAGACCACTGCTACTGCAGTAGCCTGGACCTTGATGCTTCTGTCACTGCACCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009957 GO:0009987 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045165 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

352

Amino Acids

39.97

Weight (kDa)

9.16

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	83 - 352	5.7e-32	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37260 AT2G37260 AT2G37260
fragaria_vesca	FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050 FvH4_6g15050
malus_domestica	MD04G1112800.v1.1 MD04G1113100.v1.1 MD12G1128800.v1.1 MD12G1129000.v1.1
prunus_persica	Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1 Prupe.6G244300_v2.0.a1
pyrus_communis	pycom04g10230 pycom12g12530
rosa_chinensis	RchiOBHm_Chr3g0468221
rosa_laevigata	RLG00000024440
rosa_multiflora	Rmu_sc0004524.1_g000004
rosa_roxburghii	Rroxscaffold_6G00412890
rosa_rugosa	Rorug03G0094300 Rorug03G0094400 Rorug03G0094500 Rorug03G0094600 Rorug03G0094600
rosa_samantha	Rh3AG142000 Rh3BG163400 Rh3DG164100
rosa_wichuraiana	Rw3G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	3 cut(s)	185, 294, 388
AciI	CCGC	2 cut(s)	134, 189
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	2 cut(s)	332, 852
AcsI	RAATTY	1 cut(s)	491
AfaI	GTAC	4 cut(s)	228, 252, 302, 986
AflIII	ACRYGT	2 cut(s)	297, 516
AgsI	TTSAA	3 cut(s)	625, 857, 908
AjnI	CCWGG	1 cut(s)	1022
AluBI	AGCT	4 cut(s)	358, 419, 435, 656
AluI	AGCT	4 cut(s)	358, 419, 435, 656
AlwI	GGATC	2 cut(s)	332, 852
AoxI	GGCC	1 cut(s)	627
ApeKI	GCWGC	4 cut(s)	5, 136, 312, 914
ApoI	RAATTY	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	998
AspS9I	GGNCC	3 cut(s)	131, 287, 1026
AsuHPI	GGTGA	3 cut(s)	190, 440, 544
AvaII	GGWCC	3 cut(s)	131, 287, 1026
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	17, 148, 324, 901
BccI	CCATC	2 cut(s)	163, 523
BciT130I	CCWGG	1 cut(s)	1024
BfaI	CTAG	2 cut(s)	90, 636
BfmI	CTRYAG	1 cut(s)	1014
BfoI	RGCGCY	1 cut(s)	999
BisI	GCNGC	4 cut(s)	6, 137, 313, 915
BlsI	GCNGC	4 cut(s)	7, 138, 314, 916
Bme1390I	CCNGG	1 cut(s)	1024
Bme18I	GGWCC	3 cut(s)	131, 287, 1026
BmgT120I	GGNCC	3 cut(s)	131, 287, 1026
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	1024
BmsI	GCATC	4 cut(s)	132, 218, 884, 1023
BpuEI	CTTGAG	1 cut(s)	781
BsaJI	CCNNGG	2 cut(s)	37, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bse1I	ACTGG	2 cut(s)	73, 290
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	1024
BseDI	CCNNGG	2 cut(s)	37, 375
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	38, 1013
BseNI	ACTGG	2 cut(s)	73, 290
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	4 cut(s)	17, 148, 324, 901
BsgI	GTGCAG	1 cut(s)	1031
BshFI	GGCC	1 cut(s)	629
BshNI	GGYRCC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	101, 337, 362, 477, 844
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	2 cut(s)	134, 189
BspANI	GGCC	1 cut(s)	629
BspCNI	CTCAG	2 cut(s)	39, 1012
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	1018
BspPI	GGATC	2 cut(s)	332, 852
BspT107I	GGYRCC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	480
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	73, 290
BssECI	CCNNGG	2 cut(s)	37, 375
BssMI	GATC	5 cut(s)	101, 337, 362, 477, 844
BssNAI	GTATAC	1 cut(s)	295
BssT1I	CCWWGG	2 cut(s)	37, 375
Bst1107I	GTATAC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	1024
Bst4CI	ACNGT	1 cut(s)	345
BstAUI	TGTACA	1 cut(s)	226
BstC8I	GCNNGC	5 cut(s)	317, 417, 658, 936, 994
BstDEI	CTNAG	3 cut(s)	47, 359, 999
BstDSI	CCRYGG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	999
BstHHI	GCGC	1 cut(s)	998
BstKTI	GATC	5 cut(s)	104, 340, 365, 480, 847
BstMBI	GATC	5 cut(s)	101, 337, 362, 477, 844
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 115, 229, 364, 591
BstNI	CCWGG	1 cut(s)	1024
BstNSI	RCATGY	4 cut(s)	227, 301, 520, 934
BstSCI	CCNGG	1 cut(s)	1022
BstSFI	CTRYAG	1 cut(s)	1014
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	4 cut(s)	17, 148, 324, 901
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstZ17I	GTATAC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	629
BtgI	CCRYGG	1 cut(s)	375
BtsI	GCAGTG	3 cut(s)	159, 1005, 1043
BtsIMutI	CAGTG	4 cut(s)	111, 159, 1005, 1043
Cac8I	GCNNGC	5 cut(s)	317, 417, 658, 936, 994
CfoI	GCGC	1 cut(s)	998
Cfr13I	GGNCC	3 cut(s)	131, 287, 1026
CseI	GACGC	1 cut(s)	827
Csp6I	GTAC	4 cut(s)	227, 251, 301, 985
CviAII	CATG	6 cut(s)	224, 298, 376, 517, 561, 931
CviQI	GTAC	4 cut(s)	227, 251, 301, 985
DdeI	CTNAG	3 cut(s)	47, 359, 999
DpnI	GATC	5 cut(s)	103, 339, 364, 479, 846
DpnII	GATC	5 cut(s)	101, 337, 362, 477, 844
DraI	TTTAAA	1 cut(s)	804
Eco130I	CCWWGG	2 cut(s)	37, 375
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	3 cut(s)	131, 287, 1026
EcoRII	CCWGG	1 cut(s)	1022
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	37, 375
ErhI	CCWWGG	2 cut(s)	37, 375
FaeI	CATG	6 cut(s)	227, 301, 379, 520, 564, 934
FatI	CATG	6 cut(s)	223, 297, 375, 516, 560, 930
FblI	GTMKAC	3 cut(s)	185, 294, 388
Fnu4HI	GCNGC	4 cut(s)	6, 137, 313, 915
Fsp4HI	GCNGC	4 cut(s)	6, 137, 313, 915
FspBI	CTAG	2 cut(s)	90, 636
GlaI	GCGC	1 cut(s)	997
GluI	GCNGC	4 cut(s)	6, 137, 313, 915
HaeII	RGCGCY	1 cut(s)	999
HaeIII	GGCC	1 cut(s)	629
HgaI	GACGC	1 cut(s)	827
HhaI	GCGC	1 cut(s)	998
Hin1II	CATG	6 cut(s)	227, 301, 379, 520, 564, 934
Hin6I	GCGC	1 cut(s)	996
HinP1I	GCGC	1 cut(s)	996
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	4 cut(s)	97, 178, 587, 765
HphI	GGTGA	3 cut(s)	190, 440, 544
Hpy166II	GTNNAC	6 cut(s)	57, 186, 253, 295, 389, 817
Hpy188I	TCNGA	7 cut(s)	48, 128, 155, 528, 730, 952, 1002
Hpy188III	TCNNGA	3 cut(s)	636, 651, 713
Hpy8I	GTNNAC	6 cut(s)	57, 186, 253, 295, 389, 817
Hpy99I	CGWCG	1 cut(s)	867
HpyAV	CCTTC	3 cut(s)	87, 150, 619
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	7 cut(s)	415, 698, 875, 917, 992, 1016, 1048
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 115, 229, 364, 591
HpyF3I	CTNAG	3 cut(s)	47, 359, 999
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	6 cut(s)	227, 301, 379, 520, 564, 934
HspAI	GCGC	1 cut(s)	996
Kzo9I	GATC	5 cut(s)	101, 337, 362, 477, 844
Lsp1109I	GCAGC	4 cut(s)	17, 148, 324, 901
LweI	GCATC	4 cut(s)	132, 218, 884, 1023
MaeI	CTAG	2 cut(s)	90, 636
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	926, 1041
MalI	GATC	5 cut(s)	103, 339, 364, 479, 846
MboI	GATC	5 cut(s)	101, 337, 362, 477, 844
MboII	GAAGA	6 cut(s)	25, 187, 254, 487, 728, 802
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	6 cut(s)	27, 491, 609, 699, 833, 897
MnlI	CCTC	6 cut(s)	122, 256, 465, 610, 805, 834
MseI	TTAA	7 cut(s)	69, 347, 422, 510, 555, 803, 945
MspR9I	CCNGG	1 cut(s)	1024
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	5 cut(s)	48, 115, 229, 364, 591
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	5 cut(s)	101, 337, 362, 477, 844
NlaIII	CATG	6 cut(s)	227, 301, 379, 520, 564, 934
NlaIV	GGNNCC	1 cut(s)	243
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	926, 1041
NspI	RCATGY	4 cut(s)	227, 301, 520, 934
PciI	ACATGT	2 cut(s)	297, 516
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	4 cut(s)	97, 178, 587, 765
PkrI	GCNGC	4 cut(s)	7, 138, 314, 916
PscI	ACATGT	2 cut(s)	297, 516
Psp1406I	AACGTT	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	1022
PspGI	CCWGG	1 cut(s)	1022
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	3 cut(s)	131, 287, 1026
PstI	CTGCAG	1 cut(s)	1018
RsaI	GTAC	4 cut(s)	228, 252, 302, 986
RsaNI	GTAC	4 cut(s)	227, 251, 301, 985
SaqAI	TTAA	7 cut(s)	69, 347, 422, 510, 555, 803, 945
SatI	GCNGC	4 cut(s)	6, 137, 313, 915
Sau3AI	GATC	5 cut(s)	101, 337, 362, 477, 844
Sau96I	GGNCC	3 cut(s)	131, 287, 1026
ScrFI	CCNGG	1 cut(s)	1024
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	4 cut(s)	132, 218, 884, 1023
SfcI	CTRYAG	1 cut(s)	1014
SinI	GGWCC	3 cut(s)	131, 287, 1026
SmlI	CTYRAG	1 cut(s)	760
SmoI	CTYRAG	1 cut(s)	760
Sse9I	AATT	6 cut(s)	27, 491, 609, 699, 833, 897
SsiI	CCGC	2 cut(s)	134, 189
SspMI	CTAG	2 cut(s)	90, 636
StyD4I	CCNGG	1 cut(s)	1022
StyI	CCWWGG	2 cut(s)	37, 375
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	2 cut(s)	100, 212
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	6 cut(s)	27, 491, 609, 699, 833, 897
TatI	WGTACW	3 cut(s)	226, 300, 984
TfiI	GAWTC	4 cut(s)	97, 178, 587, 765
Tru1I	TTAA	7 cut(s)	69, 347, 422, 510, 555, 803, 945
Tru9I	TTAA	7 cut(s)	69, 347, 422, 510, 555, 803, 945
TscAI	CASTG	4 cut(s)	111, 166, 1012, 1050
TseFI	GTSAC	2 cut(s)	926, 1041
TseI	GCWGC	4 cut(s)	5, 136, 312, 914
Tsp45I	GTSAC	2 cut(s)	926, 1041
TspDTI	ATGAA	3 cut(s)	132, 254, 416
TspGWI	ACGGA	3 cut(s)	238, 465, 880
TspRI	CASTG	4 cut(s)	111, 166, 1012, 1050
VpaK11BI	GGWCC	3 cut(s)	131, 287, 1026
XapI	RAATTY	1 cut(s)	491
XbaI	TCTAGA	1 cut(s)	635
XceI	RCATGY	4 cut(s)	227, 301, 520, 934
XmiI	GTMKAC	3 cut(s)	185, 294, 388
XspI	CTAG	2 cut(s)	90, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.