FvH4_6g15050
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
9336523 .. 9341551
5029 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15050.t5

Sequence Viewer

Length: 1437 bp
ATGGACATTAAGGAGGCAGAGCGGGTAGTGATAGCTAAACCTGTTGCGACAAGGCCTACTTGTTCCAGCTTCAAGTCATTCACGGAGCTTCTTACAGGTGCTATCGATGCAGCGCCCTCTAATGTATCTTCTGAAACTGCTGTTCCTGCCATCAGACCAAAGACTGTAAGGTTCAAGCCAACAGCCAATCATCCTGTTGCTGCATTGGTTTCTTCCCAGGCAGAGACCTCTGGTGCTGCAATTAGTAATTCAGCAGAGAAGGTTTCAAAATCAGATAGTAAATCAACTGTTGTGTACAAACCATTGGCGAAAGTTGTATCGAGGGCGACTGTTTCTGCCTTGGCTAATCTGGGAAACTTCAATACTAGCCAGCAACAAACACAGTCATCAGTTGGGACTGGTGTGGTTCTACGTCCAAACCGTGATAAATCCTATAAAACACAACTCGTCTCAAACATTTACCAGAAAAGTCGATCATGTGCCGAGACAAGCCAGACTACAGAACCAGTAAAGATAGTATCTCAAAATATGGAAGAGGATGCAAAGAATATCCCAGCTGCAGCCAATAGTGATAGGCCTTCTTATGATGGATACAATTGGAGAAAATATGGGCAAAAGCAAGTCAAAGGAAGTGAGTACCCACGAAGTTATTACAAGTGCACACATCCGAATTGTCCCGTGAAAAAGAAAGTCGAGAGATCTTTGGATGGACAGATTGCTGAGATTGTATACAAGGGTGAACACAACCACTCAAAGCCTCAGCCTCCAAAGCGCAGCTCATCTGGGACGCAAGGGTCAGGATTTGCATCTGATGCAACTGGTCAAGATTACAACACCCGGTTATGGAATAGTCATCTTAATGAAAAGAATGAAGGTTCTGAAGGTAGAGTAGAGGATCAGAATGAAGTTGGAATACCAGTGCATTCTTATCAAAGCAAAAACATAGTACATTATGATCCACTTGCAACTGGAAAACTAAATGCTGGCACTGCAACTCCTGATAATTCTTGTGGAGTTAGCGGAGAATGTGAGGAAGGAAGCAAGGGAGTTGAGACAGAGGATTACGAGCCTAGAAGTAAGAGAAGAAAAAGTGAGAATCAATCAAGTGAAGCAGGCATATCGGGCGAAGTCATGCAAGAACCTCGTGTTGTGGTGCAAAGTTCTGCAGATACTGAGATTACAGGTGATGGCTTCCGCTGGAGGAAATATGGGCAGAAAGTTGTCAAGGGAAATCCATATCCCAGAAGTTACTACAGATGCACCAGTGTCAAATGCAGTGTGCGTAAGCACGTCGAAAGAGTTTCAGAGGATCCGAAAGCCTTTATCACAACATACGAGGGAAAGCACAACCATGACATGCCACTGAGGACCGCAAACCCAGGGGCATCATCGGAAAAGGATCCACAGGCCCCTCCTTCAAGTAAAGAAAAGCCATGA

Protein Analysis

479

Amino Acids

52.19

Weight (kDa)

9.14

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 141 - 195 8.7e-27 WRKY DNA -binding domain
WRKY PF03106 341 - 397 3.4e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 793
AccBSI CCGCTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 729
AciI CCGC 4 cut(s) 22, 1020, 1195, 1371
AclWI GGATC 6 cut(s) 903, 950, 1304, 1317, 1394, 1407
AcuI CTGAAG 1 cut(s) 900
AfaI GTAC 3 cut(s) 296, 638, 948
AfiI CCNNNNNNNGG 1 cut(s) 843
AgsI TTSAA 5 cut(s) 73, 175, 267, 361, 1419
AjiI CACGTC 1 cut(s) 1291
AjnI CCWGG 2 cut(s) 216, 1378
AluBI AGCT 5 cut(s) 35, 69, 88, 557, 777
AluI AGCT 5 cut(s) 35, 69, 88, 557, 777
Alw21I GWGCWC 1 cut(s) 662
Alw26I GTCTC 4 cut(s) 218, 454, 479, 1046
Alw44I GTGCAC 1 cut(s) 658
AlwI GGATC 6 cut(s) 903, 950, 1304, 1317, 1394, 1407
AlwNI CAGNNNCTG 1 cut(s) 1172
AoxI GGCC 3 cut(s) 53, 575, 1407
ApaLI GTGCAC 1 cut(s) 658
ApeKI GCWGC 6 cut(s) 110, 200, 236, 557, 560, 774
AspLEI GCGC 2 cut(s) 115, 774
AspS9I GGNCC 2 cut(s) 1368, 1408
AsuC2I CCSGG 1 cut(s) 838
AsuHPI GGTGA 2 cut(s) 749, 1196
AvaII GGWCC 1 cut(s) 1368
BaeGI GKGCMC 1 cut(s) 662
BamHI GGATCC 2 cut(s) 1309, 1399
BarI GAAGNNNNNNTAC 2 cut(s) 897, 929
BauI CACGAG 1 cut(s) 1143
Bbv12I GWGCWC 1 cut(s) 662
BbvCI CCTCAGC 1 cut(s) 759
BbvI GCAGC 6 cut(s) 122, 187, 223, 544, 572, 786
BccI CCATC 4 cut(s) 158, 581, 701, 1181
BcgI CGANNNNNNTGC 4 cut(s) 1101, 1124, 1135, 1158
BciT130I CCWGG 2 cut(s) 218, 1380
BciVI GTATCC 1 cut(s) 584
BcnI CCSGG 1 cut(s) 838
BcoDI GTCTC 4 cut(s) 218, 454, 479, 1046
BfaI CTAG 2 cut(s) 366, 1071
BfmI CTRYAG 4 cut(s) 498, 558, 1164, 1252
BfoI RGCGCY 1 cut(s) 116
BfuI GTATCC 1 cut(s) 584
BglII AGATCT 1 cut(s) 698
BisI GCNGC 6 cut(s) 111, 201, 237, 558, 561, 775
BlsI GCNGC 6 cut(s) 112, 202, 238, 559, 562, 776
Bme1390I CCNGG 3 cut(s) 218, 838, 1380
Bme18I GGWCC 1 cut(s) 1368
BmgBI CACGTC 1 cut(s) 1291
BmgT120I GGNCC 2 cut(s) 1368, 1408
BmiI GGNNCC 3 cut(s) 1311, 1401, 1410
BmrFI CCNGG 3 cut(s) 218, 838, 1380
BmsI GCATC 6 cut(s) 97, 529, 802, 815, 1247, 1394
BpmI CTGGAG 1 cut(s) 1219
Bpu10I CCTNAGC 1 cut(s) 759
BpuMI CCSGG 1 cut(s) 838
Bsa29I ATCGAT 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 805
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 4 cut(s) 216, 339, 1378, 1379
BsaXI ACNNNNNCTCC 2 cut(s) 979, 1009
Bsc4I CCNNNNNNNGG 1 cut(s) 843
Bse1I ACTGG 6 cut(s) 403, 506, 823, 917, 973, 1263
Bse8I GATNNNNATC 1 cut(s) 805
BseBI CCWGG 2 cut(s) 218, 1380
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 4 cut(s) 216, 339, 1378, 1379
BseGI GGATG 4 cut(s) 190, 544, 664, 712
BseJI GATNNNNATC 1 cut(s) 805
BseLI CCNNNNNNNGG 1 cut(s) 843
BseMII CTCAG 4 cut(s) 711, 773, 1164, 1355
BseNI ACTGG 6 cut(s) 403, 506, 823, 917, 973, 1263
BseSI GKGCMC 1 cut(s) 662
BseXI GCAGC 6 cut(s) 122, 187, 223, 544, 572, 786
BseYI CCCAGC 1 cut(s) 553
BshFI GGCC 3 cut(s) 55, 577, 1409
BshVI ATCGAT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 662
BsiSI CCGG 1 cut(s) 838
BslFI GGGAC 3 cut(s) 409, 660, 799
BslI CCNNNNNNNGG 1 cut(s) 843
BsmAI GTCTC 4 cut(s) 218, 454, 479, 1046
BsmBI CGTCTC 1 cut(s) 454
BsmFI GGGAC 3 cut(s) 409, 660, 799
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 3 cut(s) 55, 577, 1409
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 662
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 6 cut(s) 473, 698, 895, 955, 1309, 1399
BspACI CCGC 4 cut(s) 22, 1020, 1195, 1371
BspANI GGCC 3 cut(s) 55, 577, 1409
BspCNI CTCAG 4 cut(s) 712, 772, 1165, 1356
BspDI ATCGAT 1 cut(s) 105
BspLI GGNNCC 3 cut(s) 1311, 1401, 1410
BspMAI CTGCAG 2 cut(s) 562, 1168
BspPI GGATC 6 cut(s) 903, 950, 1304, 1317, 1394, 1407
BspTNI GGTCTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 6 cut(s) 403, 506, 823, 917, 973, 1263
BssECI CCNNGG 4 cut(s) 216, 339, 1378, 1379
BssMI GATC 6 cut(s) 473, 698, 895, 955, 1309, 1399
BssNAI GTATAC 1 cut(s) 730
BssSI CACGAG 1 cut(s) 1143
BssT1I CCWWGG 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 730
Bst2BI CACGAG 1 cut(s) 1143
Bst2UI CCWGG 2 cut(s) 218, 1380
Bst4CI ACNGT 5 cut(s) 166, 289, 331, 384, 422
Bst6I CTCTTC 1 cut(s) 528
BstAPI GCANNNNNTGC 1 cut(s) 812
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 3 cut(s) 371, 985, 1114
BstDEI CTNAG 4 cut(s) 720, 759, 1173, 1364
BstF5I GGATG 4 cut(s) 190, 544, 664, 712
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 115, 774
BstKTI GATC 6 cut(s) 476, 701, 898, 958, 1312, 1402
BstMAI GTCTC 4 cut(s) 218, 454, 479, 1046
BstMBI GATC 6 cut(s) 473, 698, 895, 955, 1309, 1399
BstMWI GCNNNNNNNGC 6 cut(s) 107, 146, 769, 812, 989, 1122
BstNI CCWGG 2 cut(s) 218, 1380
BstNSI RCATGY 1 cut(s) 1360
BstSCI CCNGG 3 cut(s) 216, 836, 1378
BstSFI CTRYAG 4 cut(s) 498, 558, 1164, 1252
BstSLI GKGCMC 1 cut(s) 662
BstV1I GCAGC 6 cut(s) 122, 187, 223, 544, 572, 786
BstX2I RGATCY 3 cut(s) 698, 1309, 1399
BstYI RGATCY 3 cut(s) 698, 1309, 1399
BstZ17I GTATAC 1 cut(s) 730
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 3 cut(s) 55, 577, 1409
BsuTUI ATCGAT 1 cut(s) 105
BtrI CACGTC 1 cut(s) 1291
BtsCI GGATG 4 cut(s) 190, 544, 664, 712
BtsI GCAGTG 2 cut(s) 987, 1282
BtsIMutI CAGTG 5 cut(s) 924, 987, 1270, 1282, 1361
Cac8I GCNNGC 3 cut(s) 371, 985, 1114
CaiI CAGNNNCTG 1 cut(s) 1172
CfoI GCGC 2 cut(s) 115, 774
Cfr13I GGNCC 2 cut(s) 1368, 1408
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 1 cut(s) 796
Csp6I GTAC 3 cut(s) 295, 637, 947
CviAII CATG 5 cut(s) 477, 1132, 1352, 1357, 1434
CviQI GTAC 3 cut(s) 295, 637, 947
DdeI CTNAG 4 cut(s) 720, 759, 1173, 1364
DpnI GATC 6 cut(s) 475, 700, 897, 957, 1311, 1401
DpnII GATC 6 cut(s) 473, 698, 895, 955, 1309, 1399
DrdI GACNNNNNNGTC 1 cut(s) 793
DseDI GACNNNNNNGTC 1 cut(s) 793
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 339
Eco147I AGGCCT 2 cut(s) 55, 577
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 1368
Eco57I CTGAAG 1 cut(s) 900
EcoO109I RGGNCCY 1 cut(s) 1408
EcoRII CCWGG 2 cut(s) 216, 1378
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 5 cut(s) 480, 1135, 1355, 1360, 1437
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FaqI GGGAC 3 cut(s) 409, 660, 799
FatI CATG 5 cut(s) 476, 1131, 1351, 1356, 1433
FauI CCCGC 1 cut(s) 15
FblI GTMKAC 1 cut(s) 729
Fnu4HI GCNGC 6 cut(s) 111, 201, 237, 558, 561, 775
FokI GGATG 4 cut(s) 177, 551, 651, 719
Fsp4HI GCNGC 6 cut(s) 111, 201, 237, 558, 561, 775
FspBI CTAG 2 cut(s) 366, 1071
GlaI GCGC 2 cut(s) 114, 773
GluI GCNGC 6 cut(s) 111, 201, 237, 558, 561, 775
GsaI CCCAGC 1 cut(s) 557
GsuI CTGGAG 1 cut(s) 1219
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 3 cut(s) 55, 577, 1409
HapII CCGG 1 cut(s) 838
HgaI GACGC 1 cut(s) 796
HhaI GCGC 2 cut(s) 115, 774
Hin1II CATG 5 cut(s) 480, 1135, 1355, 1360, 1437
Hin6I GCGC 2 cut(s) 113, 772
HinP1I GCGC 2 cut(s) 113, 772
HinfI GANTC 1 cut(s) 1096
HpaII CCGG 1 cut(s) 838
HphI GGTGA 2 cut(s) 749, 1196
Hpy166II GTNNAC 4 cut(s) 295, 660, 730, 740
Hpy188III TCNNGA 4 cut(s) 694, 798, 824, 998
Hpy8I GTNNAC 4 cut(s) 295, 660, 730, 740
Hpy99I CGWCG 1 cut(s) 1295
HpyAV CCTTC 6 cut(s) 253, 588, 866, 875, 1028, 1425
HpyCH4III ACNGT 5 cut(s) 166, 289, 331, 384, 422
HpyCH4IV ACGT 2 cut(s) 412, 1290
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 146, 769, 812, 989, 1122
HpyF3I CTNAG 4 cut(s) 720, 759, 1173, 1364
HpySE526I ACGT 2 cut(s) 412, 1290
Hsp92II CATG 5 cut(s) 480, 1135, 1355, 1360, 1437
HspAI GCGC 2 cut(s) 113, 772
Kzo9I GATC 6 cut(s) 473, 698, 895, 955, 1309, 1399
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 6 cut(s) 122, 187, 223, 544, 572, 786
LweI GCATC 6 cut(s) 97, 529, 802, 815, 1247, 1394
MaeI CTAG 2 cut(s) 366, 1071
MaeII ACGT 2 cut(s) 412, 1290
MaeIII GTNAC 1 cut(s) 1247
MalI GATC 6 cut(s) 475, 700, 897, 957, 1311, 1401
MbiI CCGCTC 1 cut(s) 22
MboI GATC 6 cut(s) 473, 698, 895, 955, 1309, 1399
MboII GAAGA 4 cut(s) 120, 204, 545, 1095
MfeI CAATTG 1 cut(s) 595
MflI RGATCY 3 cut(s) 698, 1309, 1399
MhlI GDGCHC 1 cut(s) 662
MluCI AATT 5 cut(s) 240, 247, 595, 670, 1003
MmeI TCCRAC 1 cut(s) 889
MseI TTAA 2 cut(s) 9, 858
MslI CAYNNNNRTG 2 cut(s) 858, 1350
MspA1I CMGCKG 2 cut(s) 557, 1197
MspI CCGG 1 cut(s) 838
MspR9I CCNGG 3 cut(s) 218, 838, 1380
MunI CAATTG 1 cut(s) 595
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 2 cut(s) 218, 1380
MwoI GCNNNNNNNGC 6 cut(s) 107, 146, 769, 812, 989, 1122
NciI CCSGG 1 cut(s) 838
NdeII GATC 6 cut(s) 473, 698, 895, 955, 1309, 1399
NlaIII CATG 5 cut(s) 480, 1135, 1355, 1360, 1437
NlaIV GGNNCC 3 cut(s) 1311, 1401, 1410
NmeAIII GCCGAG 1 cut(s) 508
NspI RCATGY 1 cut(s) 1360
PasI CCCWGGG 1 cut(s) 1379
PceI AGGCCT 2 cut(s) 55, 577
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PctI GAATGC 1 cut(s) 922
PfeI GAWTC 1 cut(s) 1096
PkrI GCNGC 6 cut(s) 112, 202, 238, 559, 562, 776
Psp6I CCWGG 2 cut(s) 216, 1378
PspFI CCCAGC 1 cut(s) 553
PspGI CCWGG 2 cut(s) 216, 1378
PspN4I GGNNCC 3 cut(s) 1311, 1401, 1410
PspPI GGNCC 2 cut(s) 1368, 1408
PstI CTGCAG 2 cut(s) 562, 1168
PstNI CAGNNNCTG 1 cut(s) 1172
PsuI RGATCY 3 cut(s) 698, 1309, 1399
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 3 cut(s) 296, 638, 948
RsaNI GTAC 3 cut(s) 295, 637, 947
RseI CAYNNNNRTG 2 cut(s) 858, 1350
SaqAI TTAA 2 cut(s) 9, 858
SatI GCNGC 6 cut(s) 111, 201, 237, 558, 561, 775
Sau3AI GATC 6 cut(s) 473, 698, 895, 955, 1309, 1399
Sau96I GGNCC 2 cut(s) 1368, 1408
ScrFI CCNGG 3 cut(s) 218, 838, 1380
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 6 cut(s) 97, 529, 802, 815, 1247, 1394
SfcI CTRYAG 4 cut(s) 498, 558, 1164, 1252
SinI GGWCC 1 cut(s) 1368
SmiMI CAYNNNNRTG 2 cut(s) 858, 1350
Sse9I AATT 5 cut(s) 240, 247, 595, 670, 1003
SseBI AGGCCT 2 cut(s) 55, 577
SsiI CCGC 4 cut(s) 22, 1020, 1195, 1371
SspMI CTAG 2 cut(s) 366, 1071
StuI AGGCCT 2 cut(s) 55, 577
StyD4I CCNGG 3 cut(s) 216, 836, 1378
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 5 cut(s) 166, 289, 331, 384, 422
TaiI ACGT 2 cut(s) 415, 1293
TaqI TCGA 5 cut(s) 105, 320, 472, 693, 1293
TasI AATT 5 cut(s) 240, 247, 595, 670, 1003
TatI WGTACW 2 cut(s) 294, 946
TfiI GAWTC 1 cut(s) 1096
Tru1I TTAA 2 cut(s) 9, 858
Tru9I TTAA 2 cut(s) 9, 858
TscAI CASTG 5 cut(s) 924, 994, 1270, 1282, 1368
TseI GCWGC 6 cut(s) 110, 200, 236, 557, 560, 774
TspDTI ATGAA 3 cut(s) 876, 885, 918
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 5 cut(s) 924, 994, 1270, 1282, 1368
VneI GTGCAC 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 1368
XceI RCATGY 1 cut(s) 1360
XmiI GTMKAC 1 cut(s) 729
XspI CTAG 2 cut(s) 366, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.