Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004041

Physical Location & Seq

Genomic Coordinates Reverse (-)

12496226 .. 12501849

Gene Structure 5624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG142100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGAATGATGAGGGAAAACAGCTGCTGGAGCTGAATCGCCGTTCATGGGATGGGAATAAGGGGGTTAAGGAAGAGGAACAGGGGTTAGTTAAGGGAGATGATTTGAAAAGTAATGGGAGAGCTGAAGATGTGAAAGTTGGCAATGGAGGGGTTGGTCAACCCCAGTTTGTTATACAACAGCCTCAGGGTTCAACTGTTTGCTGGGAGAGGTTTCTACATCTGAGATCTCTGAAGGTTTTGCTGGTGGAATATGATGATTGTACTCGCCATATTGTTGCTGCACTTCTTCGCAATTGCAGTTATGAAGTTATTGAAGCAGCAAACGGAATACAAGCCTGGAAGGTTCTTGAAGATTTAACCAATCATGTTGATCTAATCTTAACCGAGGTAGTTATGCCATGTGTATCAGGCATTAGTCTTTTATCCAAGATTATGAGCCATAAGTCCCGAAAGAATGTTCCTGTGATTATGATGTCATCTCAAGATTCTATGGGTTTGGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGACTTCTTGGTGAAGCCCATTCGGAAGAATGAGCTTAAGAACCTCTGGCAGCATGTTTGGAGGAGATGCCATAGTTCTAGTGGTAGTGGAACCGGAAGCGAAAGTGGCACACAGACTCAGAAGTCAGTAAGATCAAATAGTGTTGACAAGTCTGACAACAACAGTGGAAGCAATGATGAGGAAGATAATGGGAGTATGGGTTTGAATGTTGGAGATGGAAGTGACAATGGAAGTGGTACTCAGAGTTCTTGGACAAAACAAGCTGTAGAAGTTGACAGTCCACGACAGGTGTTTTCATGGCATCCTGATAGTACTTGTGCCCAAGTAGTTCACTCCAACGCTGAAACATTTGGTAAGCAATTGGTTACTGGTGCTGCAGCAAGGGACTGCCAGCAACAGAAAGAAGAATATGACAACTTTGCAATGGGTAAAGATTTGGAGATTGGCATGAATAGCAAGAGAGAGATACAGCGTGAGCATCCTATTGAGTTTCCAACCAAACTAGCAGGCCCAAGGCAGAATAATCTGCTCAACATAGGTTCTGGTAAATATGATGAAAGTCCTTCCAGCAAGCAAAAGTATGATGGTGCTTCTATAACAGGTGATGTCACCAATCCCTCTGATCCCCAGTTGGAGAGCACAAAATTTGAAGCTTCTAACAGACATTATAAGGCCTTGGACATTAGCAGTACACCTAATAACGATACTGATGAACTACCATCCCTAGAGCTCAGTTTGAAAAGACTTAGAGGAGTTAAAGGCACTGAGACAACAGTACAAGATGACCGCAATGTCTTGAGGCGTTCGGACTCTTCAGCATTTTCAAGGTATAATGCAGCCTCAAATGCTAACAAGGCTCCTTCTGGGCATGTTGGAAGCAATTCTCCACATGATAATAATGGAGAAAGTACGAACAAGGATCTGTTTAATGATATCCCATCTCACTCAAGTGACAATCCTCCCAATCAATGCTCAAATGGAGGCAGCAATAACATTGACATGGGCTCCACAACTAATAATAATCCTCGTGAGCCTCTTGTTATAAACAAGACAGCAGCTGCATCCACAATTCAACGTTTGCATCCATCATCTGCTTTTCATCCTGTGAAAAAGGACCCTATGAATGCTACTCAGCTAGTTTTAATAGATAATGCTAACAATGGGGCAACAACAGTACTGGCTCAATCAAGATGTGCCCAGAAGCCACAATTTCAAACTCAAAACCTCCATCAGGATTATGATCACCATCAGGTCCATCACCCTGTTGCCCACACAATGCAAAAACAGCAGCTTCCTGACCATAGTGATTTATCTTTAAAGAAATTGGCTGCAGCTGCTCCACATTGCGGATCATCAAATGTTAGGAGTGGGCCTGTTGAAGGTAATCCTGGAAATTACAGTGTCAACAGAAGTGCTTCTGGCAGTAACCATGGGAGCAATGGGCAAAATGGAAGCAATATTGGAGGTACAAACATGGAAAGTGATAATGGAGTTGCTGGAAAAAGTGGAAGTGGTGATGGTAGTGGAAACCAGAGTGGAAATAGAGTAGATGAAAACAAATTTTCCCAGAGAGAGGCTGCCTTGACCAAGTTCCGTCTGAAAAGAAATGAGAGATGCTTCCGGAAAAAGGTTCGATATCAAAGCAGAAAAAGACTGGCGGAACAGCGACCTCGTGTTCGTGGACAGTTTGTCCGGCAGACAATGAGCGAGAACACTACCAGGACAACAGATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048511 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT Response_reg

Protein Analysis

754

Amino Acids

82.45

Weight (kDa)

8.31

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	79 - 190	3.7e-20	Response regulator receiver domain
CCT	PF06203	700 - 742	1.1e-15	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02810 AT5G02810
fragaria_vesca	FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060 FvH4_6g15060
malus_domestica	MD04G1113200.v1.1 MD12G1128600.v1.1
prunus_persica	Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1 Prupe.6G244200_v2.0.a1
pyrus_communis	pycom04g10210 pycom12g12520
rosa_chinensis	RchiOBHm_Chr3g0468241
rosa_laevigata	RLG00000024439
rosa_multiflora	Rmu_sc0004524.1_g000003 Rmu_sc0005436.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412880
rosa_rugosa	Rorug03G0094600 Rorug03G0094600 Rorug03G0094700
rosa_samantha	Rh3AG142100 Rh3BG163600 Rh3DG164300
rosa_wichuraiana	Rw3G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1197, 1571
AasI	GACNNNNNNGTC	2 cut(s)	649, 1319
AccIII	TCCGGA	1 cut(s)	2148
AciI	CCGC	3 cut(s)	1315, 1875, 2186
AclI	AACGTT	1 cut(s)	1603
AclWI	GGATC	3 cut(s)	1145, 1455, 1885
AcsI	RAATTY	2 cut(s)	1172, 2087
AcuI	CTGAAG	3 cut(s)	144, 251, 1326
AfaI	GTAC	8 cut(s)	262, 766, 841, 1219, 1305, 1438, 1704, 1996
AfiI	CCNNNNNNNGG	6 cut(s)	46, 1759, 1874, 1907, 2101, 2155
AflII	CTTAAG	1 cut(s)	563
AhdI	GACNNNNNGTC	1 cut(s)	2216
AjnI	CCWGG	3 cut(s)	335, 1915, 2246
AleI	CACNNNNGTG	1 cut(s)	1476
Alw21I	GWGCWC	2 cut(s)	1169, 1260
Alw26I	GTCTC	1 cut(s)	1289
AlwI	GGATC	3 cut(s)	1145, 1455, 1885
AlwNI	CAGNNNCTG	2 cut(s)	25, 1586
Aor13HI	TCCGGA	1 cut(s)	2148
AoxI	GGCC	3 cut(s)	1036, 1200, 1898
ApoI	RAATTY	2 cut(s)	1172, 2087
ArsI	GACNNNNNNTTYG	2 cut(s)	2187, 2219
Asp700I	GAANNNNTTC	2 cut(s)	1408, 1942
AspS9I	GGNCC	4 cut(s)	1037, 1642, 1780, 1898
AsuHPI	GGTGA	6 cut(s)	550, 1129, 1142, 1763, 1778, 2054
AvaII	GGWCC	2 cut(s)	1642, 1780
AxyI	CCTNAGG	1 cut(s)	183
BaeGI	GKGCMC	2 cut(s)	850, 1726
BanII	GRGCYC	2 cut(s)	1260, 1535
BauI	CACGAG	2 cut(s)	1554, 2199
Bbv12I	GWGCWC	2 cut(s)	1169, 1260
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	3 cut(s)	337, 1917, 2248
BclI	TGATCA	1 cut(s)	1768
BcoDI	GTCTC	1 cut(s)	1289
BfaI	CTAG	4 cut(s)	606, 1031, 1253, 1664
BfmI	CTRYAG	3 cut(s)	792, 903, 1857
BfrI	CTTAAG	1 cut(s)	563
BglII	AGATCT	1 cut(s)	224
BmcAI	AGTACT	2 cut(s)	841, 1704
Bme1390I	CCNGG	3 cut(s)	337, 1917, 2248
Bme18I	GGWCC	2 cut(s)	1642, 1780
BmeRI	GACNNNNNGTC	1 cut(s)	2216
BmgT120I	GGNCC	4 cut(s)	1037, 1642, 1780, 1898
BmiI	GGNNCC	4 cut(s)	619, 1386, 1534, 1644
BmrFI	CCNGG	3 cut(s)	337, 1917, 2248
BmrI	ACTGGG	2 cut(s)	157, 1150
BmsI	GCATC	6 cut(s)	584, 838, 1015, 1598, 1618, 2132
BmuI	ACTGGG	2 cut(s)	157, 1150
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	3 cut(s)	465, 1345, 1459
BsaBI	GATNNNNATC	2 cut(s)	1767, 1773
BsaJI	CCNNGG	4 cut(s)	384, 1040, 1203, 1957
BsaWI	WCCGGW	2 cut(s)	620, 2148
BsaXI	ACNNNNNCTCC	4 cut(s)	712, 742, 1517, 1547
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 1759, 1874, 1907, 2101, 2155
Bse1I	ACTGG	5 cut(s)	163, 901, 1156, 1710, 2187
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	6 cut(s)	148, 706, 957, 1324, 1870, 1972
Bse8I	GATNNNNATC	2 cut(s)	1767, 1773
BseAI	TCCGGA	1 cut(s)	2148
BseBI	CCWGG	3 cut(s)	337, 1917, 2248
BseDI	CCNNGG	4 cut(s)	384, 1040, 1203, 1957
BseGI	GGATG	7 cut(s)	55, 829, 1006, 1247, 1589, 1609, 1627
BseJI	GATNNNNATC	2 cut(s)	1767, 1773
BseLI	CCNNNNNNNGG	6 cut(s)	46, 1759, 1874, 1907, 2101, 2155
BseMI	GCAATG	6 cut(s)	148, 706, 957, 1324, 1870, 1972
BseMII	CTCAG	7 cut(s)	197, 212, 659, 782, 1273, 1284, 1673
BseNI	ACTGG	5 cut(s)	163, 901, 1156, 1710, 2187
BseRI	GAGGAG	2 cut(s)	604, 1293
BseSI	GKGCMC	2 cut(s)	850, 1726
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	1038, 1202, 1900
BsiHKAI	GWGCWC	2 cut(s)	1169, 1260
BsiSI	CCGG	3 cut(s)	621, 2149, 2221
BslFI	GGGAC	2 cut(s)	430, 926
BslI	CCNNNNNNNGG	6 cut(s)	46, 1759, 1874, 1907, 2101, 2155
BsmAI	GTCTC	1 cut(s)	1289
BsmFI	GGGAC	2 cut(s)	430, 926
BsmI	GAATGC	1 cut(s)	1657
BsnI	GGCC	3 cut(s)	1038, 1202, 1900
Bsp1286I	GDGCHC	5 cut(s)	850, 1169, 1260, 1535, 1726
Bsp13I	TCCGGA	1 cut(s)	2148
Bsp143I	GATC	7 cut(s)	224, 370, 659, 1150, 1447, 1768, 1877
Bsp19I	CCATGG	1 cut(s)	1957
BspACI	CCGC	3 cut(s)	1315, 1875, 2186
BspANI	GGCC	3 cut(s)	1038, 1202, 1900
BspCNI	CTCAG	7 cut(s)	196, 213, 658, 781, 1272, 1285, 1672
BspEI	TCCGGA	1 cut(s)	2148
BspLI	GGNNCC	4 cut(s)	619, 1386, 1534, 1644
BspMAI	CTGCAG	2 cut(s)	907, 1861
BspPI	GGATC	3 cut(s)	1145, 1455, 1885
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	6 cut(s)	148, 706, 957, 1324, 1870, 1972
BsrI	ACTGG	5 cut(s)	163, 901, 1156, 1710, 2187
BssECI	CCNNGG	4 cut(s)	384, 1040, 1203, 1957
BssMI	GATC	7 cut(s)	224, 370, 659, 1150, 1447, 1768, 1877
BssSI	CACGAG	2 cut(s)	1554, 2199
BssT1I	CCWWGG	3 cut(s)	1040, 1203, 1957
Bst2BI	CACGAG	2 cut(s)	1554, 2199
Bst2UI	CCWGG	3 cut(s)	337, 1917, 2248
Bst4CI	ACNGT	7 cut(s)	196, 692, 806, 1303, 1702, 1928, 2214
Bst6I	CTCTTC	2 cut(s)	66, 1345
BstAFI	CTTAAG	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	920, 1036, 1100
BstDEI	CTNAG	8 cut(s)	183, 221, 645, 768, 1259, 1274, 1293, 1659
BstDSI	CCRYGG	1 cut(s)	1957
BstENI	CCTNNNNNAGG	2 cut(s)	1757, 1905
BstF5I	GGATG	7 cut(s)	55, 829, 1006, 1247, 1589, 1609, 1627
BstKTI	GATC	7 cut(s)	227, 373, 662, 1153, 1450, 1771, 1880
BstMAI	GTCTC	1 cut(s)	1289
BstMBI	GATC	7 cut(s)	224, 370, 659, 1150, 1447, 1768, 1877
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 633, 981, 1373, 1382, 1813, 1862
BstNI	CCWGG	3 cut(s)	337, 1917, 2248
BstNSI	RCATGY	2 cut(s)	584, 1400
BstSCI	CCNGG	3 cut(s)	335, 1915, 2246
BstSFI	CTRYAG	3 cut(s)	792, 903, 1857
BstSLI	GKGCMC	2 cut(s)	850, 1726
BstX2I	RGATCY	2 cut(s)	224, 1447
BstYI	RGATCY	2 cut(s)	224, 1447
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	1038, 1202, 1900
BtgI	CCRYGG	1 cut(s)	1957
BtsCI	GGATG	7 cut(s)	55, 829, 1006, 1247, 1589, 1609, 1627
BtsIMutI	CAGTG	3 cut(s)	697, 1290, 1933
Cac8I	GCNNGC	3 cut(s)	920, 1036, 1100
CaiI	CAGNNNCTG	2 cut(s)	25, 1586
Cfr13I	GGNCC	4 cut(s)	1037, 1642, 1780, 1898
Csp6I	GTAC	8 cut(s)	261, 765, 840, 1218, 1304, 1437, 1703, 1995
CspCI	CAANNNNNGTGG	4 cut(s)	673, 708, 742, 777
CviQI	GTAC	8 cut(s)	261, 765, 840, 1218, 1304, 1437, 1703, 1995
DdeI	CTNAG	8 cut(s)	183, 221, 645, 768, 1259, 1274, 1293, 1659
DpnI	GATC	7 cut(s)	226, 372, 661, 1152, 1449, 1770, 1879
DpnII	GATC	7 cut(s)	224, 370, 659, 1150, 1447, 1768, 1877
DraI	TTTAAA	2 cut(s)	505, 1845
DrdI	GACNNNNNNGTC	2 cut(s)	649, 1319
DriI	GACNNNNNGTC	1 cut(s)	2216
DseDI	GACNNNNNNGTC	2 cut(s)	649, 1319
Eam1104I	CTCTTC	2 cut(s)	66, 1345
Eam1105I	GACNNNNNGTC	1 cut(s)	2216
EarI	CTCTTC	2 cut(s)	66, 1345
EciI	GGCGGA	1 cut(s)	2201
Ecl136II	GAGCTC	1 cut(s)	1258
Eco130I	CCWWGG	3 cut(s)	1040, 1203, 1957
Eco147I	AGGCCT	1 cut(s)	1202
Eco24I	GRGCYC	2 cut(s)	1260, 1535
Eco32I	GATATC	2 cut(s)	1462, 2165
Eco47I	GGWCC	2 cut(s)	1642, 1780
Eco53kI	GAGCTC	1 cut(s)	1258
Eco57I	CTGAAG	3 cut(s)	144, 251, 1326
Eco81I	CCTNAGG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	1258
EcoNI	CCTNNNNNAGG	2 cut(s)	1757, 1905
EcoO109I	RGGNCCY	1 cut(s)	1642
EcoRII	CCWGG	3 cut(s)	335, 1915, 2246
EcoRV	GATATC	2 cut(s)	1462, 2165
EcoT14I	CCWWGG	3 cut(s)	1040, 1203, 1957
EcoT38I	GRGCYC	2 cut(s)	1260, 1535
ErhI	CCWWGG	3 cut(s)	1040, 1203, 1957
FaqI	GGGAC	2 cut(s)	430, 926
FbaI	TGATCA	1 cut(s)	1768
FokI	GGATG	7 cut(s)	62, 816, 993, 1234, 1576, 1596, 1614
FriOI	GRGCYC	2 cut(s)	1260, 1535
FspBI	CTAG	4 cut(s)	606, 1031, 1253, 1664
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	1038, 1202, 1900
HapII	CCGG	3 cut(s)	621, 2149, 2221
HincII	GTYRAC	5 cut(s)	158, 529, 673, 802, 1933
HindII	GTYRAC	5 cut(s)	158, 529, 673, 802, 1933
HindIII	AAGCTT	1 cut(s)	1179
HinfI	GANTC	4 cut(s)	34, 485, 643, 1337
HpaII	CCGG	3 cut(s)	621, 2149, 2221
HphI	GGTGA	6 cut(s)	550, 1129, 1142, 1763, 1778, 2054
Hpy166II	GTNNAC	9 cut(s)	158, 529, 673, 802, 809, 859, 1220, 1933, 2210
Hpy188I	TCNGA	9 cut(s)	222, 231, 552, 648, 682, 771, 1150, 1336, 2127
Hpy8I	GTNNAC	9 cut(s)	158, 529, 673, 802, 809, 859, 1220, 1933, 2210
HpyAV	CCTTC	5 cut(s)	226, 334, 1101, 1398, 1901
HpyCH4III	ACNGT	7 cut(s)	196, 692, 806, 1303, 1702, 1928, 2214
HpyCH4IV	ACGT	1 cut(s)	1603
HpyCH4V	TGCA	9 cut(s)	281, 297, 905, 950, 1364, 1589, 1609, 1807, 1859
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 633, 981, 1373, 1382, 1813, 1862
HpyF3I	CTNAG	8 cut(s)	183, 221, 645, 768, 1259, 1274, 1293, 1659
HpySE526I	ACGT	1 cut(s)	1603
Kpn2I	TCCGGA	1 cut(s)	2148
Ksp22I	TGATCA	1 cut(s)	1768
Kzo9I	GATC	7 cut(s)	224, 370, 659, 1150, 1447, 1768, 1877
LmnI	GCTCC	5 cut(s)	28, 1390, 1538, 1870, 1962
LweI	GCATC	6 cut(s)	584, 838, 1015, 1598, 1618, 2132
MaeI	CTAG	4 cut(s)	606, 1031, 1253, 1664
MaeII	ACGT	1 cut(s)	1603
MaeIII	GTNAC	5 cut(s)	749, 892, 1135, 1478, 1952
MalI	GATC	7 cut(s)	226, 372, 661, 1152, 1449, 1770, 1879
MboI	GATC	7 cut(s)	224, 370, 659, 1150, 1447, 1768, 1877
MboII	GAAGA	8 cut(s)	83, 137, 278, 362, 565, 722, 944, 1332
MfeI	CAATTG	2 cut(s)	292, 887
MflI	RGATCY	2 cut(s)	224, 1447
MhlI	GDGCHC	5 cut(s)	850, 1169, 1260, 1535, 1726
MluCI	AATT	9 cut(s)	292, 887, 1172, 1408, 1596, 1736, 1850, 1921, 2087
MlyI	GAGTC	2 cut(s)	637, 1331
MmeI	TCCRAC	5 cut(s)	718, 888, 1046, 1140, 1381
MroI	TCCGGA	1 cut(s)	2148
MroXI	GAANNNNTTC	2 cut(s)	1408, 1942
MslI	CAYNNNNRTG	2 cut(s)	1476, 1526
MspA1I	CMGCKG	3 cut(s)	22, 1586, 1862
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	3 cut(s)	621, 2149, 2221
MspR9I	CCNGG	3 cut(s)	337, 1917, 2248
MunI	CAATTG	2 cut(s)	292, 887
Mva1269I	GAATGC	1 cut(s)	1657
MvaI	CCWGG	3 cut(s)	337, 1917, 2248
MwoI	GCNNNNNNNGC	7 cut(s)	28, 633, 981, 1373, 1382, 1813, 1862
NcoI	CCATGG	1 cut(s)	1957
NdeII	GATC	7 cut(s)	224, 370, 659, 1150, 1447, 1768, 1877
NlaIV	GGNNCC	4 cut(s)	619, 1386, 1534, 1644
NmuCI	GTSAC	3 cut(s)	749, 1135, 1478
NspI	RCATGY	2 cut(s)	584, 1400
OliI	CACNNNNGTG	1 cut(s)	1476
PceI	AGGCCT	1 cut(s)	1202
PctI	GAATGC	1 cut(s)	1657
PdmI	GAANNNNTTC	2 cut(s)	1408, 1942
PfeI	GAWTC	2 cut(s)	34, 485
PfoI	TCCNGGA	1 cut(s)	1915
PleI	GAGTC	2 cut(s)	637, 1331
PpsI	GAGTC	2 cut(s)	637, 1331
PpuMI	RGGWCCY	1 cut(s)	1642
PsiI	TTATAA	2 cut(s)	1197, 1571
Psp124BI	GAGCTC	1 cut(s)	1260
Psp1406I	AACGTT	1 cut(s)	1603
Psp5II	RGGWCCY	1 cut(s)	1642
Psp6I	CCWGG	3 cut(s)	335, 1915, 2246
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	3 cut(s)	335, 1915, 2246
PspN4I	GGNNCC	4 cut(s)	619, 1386, 1534, 1644
PspPI	GGNCC	4 cut(s)	1037, 1642, 1780, 1898
PspPPI	RGGWCCY	1 cut(s)	1642
PsrI	GAACNNNNNNTAC	2 cut(s)	757, 789
PstI	CTGCAG	2 cut(s)	907, 1861
PstNI	CAGNNNCTG	2 cut(s)	25, 1586
PsuI	RGATCY	2 cut(s)	224, 1447
PvuII	CAGCTG	3 cut(s)	22, 1586, 1862
RsaI	GTAC	8 cut(s)	262, 766, 841, 1219, 1305, 1438, 1704, 1996
RsaNI	GTAC	8 cut(s)	261, 765, 840, 1218, 1304, 1437, 1703, 1995
RseI	CAYNNNNRTG	2 cut(s)	1476, 1526
SacI	GAGCTC	1 cut(s)	1260
Sau3AI	GATC	7 cut(s)	224, 370, 659, 1150, 1447, 1768, 1877
Sau96I	GGNCC	4 cut(s)	1037, 1642, 1780, 1898
ScaI	AGTACT	2 cut(s)	841, 1704
SchI	GAGTC	2 cut(s)	637, 1331
ScrFI	CCNGG	3 cut(s)	337, 1917, 2248
SduI	GDGCHC	5 cut(s)	850, 1169, 1260, 1535, 1726
SfaNI	GCATC	6 cut(s)	584, 838, 1015, 1598, 1618, 2132
SfcI	CTRYAG	3 cut(s)	792, 903, 1857
SinI	GGWCC	2 cut(s)	1642, 1780
SmiMI	CAYNNNNRTG	2 cut(s)	1476, 1526
SmlI	CTYRAG	4 cut(s)	480, 563, 1324, 1474
SmoI	CTYRAG	4 cut(s)	480, 563, 1324, 1474
Sse9I	AATT	9 cut(s)	292, 887, 1172, 1408, 1596, 1736, 1850, 1921, 2087
SseBI	AGGCCT	1 cut(s)	1202
SsiI	CCGC	3 cut(s)	1315, 1875, 2186
SspI	AATATT	1 cut(s)	1987
SspMI	CTAG	4 cut(s)	606, 1031, 1253, 1664
SstI	GAGCTC	1 cut(s)	1260
StuI	AGGCCT	1 cut(s)	1202
StyD4I	CCNGG	3 cut(s)	335, 1915, 2246
StyI	CCWWGG	3 cut(s)	1040, 1203, 1957
TaaI	ACNGT	7 cut(s)	196, 692, 806, 1303, 1702, 1928, 2214
TaiI	ACGT	1 cut(s)	1606
TaqI	TCGA	1 cut(s)	2161
TasI	AATT	9 cut(s)	292, 887, 1172, 1408, 1596, 1736, 1850, 1921, 2087
TatI	WGTACW	5 cut(s)	260, 839, 1217, 1303, 1702
TfiI	GAWTC	2 cut(s)	34, 485
TscAI	CASTG	3 cut(s)	697, 1297, 1933
TseFI	GTSAC	3 cut(s)	749, 1135, 1478
Tsp45I	GTSAC	3 cut(s)	749, 1135, 1478
TspGWI	ACGGA	2 cut(s)	339, 2111
TspRI	CASTG	3 cut(s)	697, 1297, 1933
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	1642, 1780
XagI	CCTNNNNNAGG	2 cut(s)	1757, 1905
XapI	RAATTY	2 cut(s)	1172, 2087
XceI	RCATGY	2 cut(s)	584, 1400
XcmI	CCANNNNNNNNNTGG	2 cut(s)	605, 1964
XmnI	GAANNNNTTC	2 cut(s)	1408, 1942
XspI	CTAG	4 cut(s)	606, 1031, 1253, 1664
ZrmI	AGTACT	2 cut(s)	841, 1704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.