Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0013957

Physical Location & Seq

Genomic Coordinates Forward (+)

35833739 .. 35835425

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024438

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGGCTTTAACCCGCCTTGCAAAGCGCTCGTTGGCACCACACTCCCCTATCTCCTACCTGAGCCGGTGCTTCTATTCCGGCCTAGGATCCGAGCCCAGTTCTCACGCCGCGGCGTCTTACAGCCCGCACTTGGGGCCCAAACCCAGTCTCTTGGTCAAGGATCCGAAGGACCGGAACGTACAGTGGGTGTTCTTGGGCTCGCCGGGAGTCGGAAAAGGCACGTACGCCAGTCGTTTATCTAATCTCCTCGGCGTGCCTCACATCGCCACCGGAGATCTCGTCCGCGAAGAACTCGCTGCCTCTGGTCCTCTCTCTCAGCAGTTATCGGAGATTGTGAACCAGGGAAAGCTGGTTTCCGATGAGATTATAATAAACTTGTTGTCCAAGAGATTGGAGGCTGGAGAAGCTAAAGGCGAGTTAGGTTTTATTCTTGATGGTTTTCCACGAACCATTAGACAAGCGGAAATATTGGAAGGGGTGACGGATATTGACTTGGTGCTAAATCTGAAGCTCCGGGAAGATGTGTTGCTTGAGAAATGCCTAGGTAGACGAACATGTAGTCAGTGTGGGGGAAATTTTAATGTGGCCTCGATTAATGTCAAGGGCTCGAATGGGAGTCCTGCAATTAGCATGGCTCCGCTTCTTCCTCCTCAGCATTGTATGTCAAAGCTTGTTACTCGCGCGGATGATACTGAAGAGGTGATTAAACATCGGATTGATATATACAATGAGAAGAGCCGACCTGTAGAAGAATTCTACCATAGTAGGGGGAAATTGTTGGAGTTTGATTTGCCTGGAGGGATCCCAGAGTCTTGGCCAAAGTTGCTTGAAGTTCTTGATATTGATGACTACAAGGAGCAGCAGTCTGCTGCGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006082 GO:0006139 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0046940 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0071704 GO:0090407 GO:0099402 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

294

Amino Acids

31.91

Weight (kDa)

6.19

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	66 - 258	2.8e-38	Adenylate kinase
AAA_17	PF13207	66 - 186	4.6e-21	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37250
fragaria_vesca	FvH4_6g15070
malus_domestica	MD04G1113300.v1.1
prunus_persica	Prupe.6G244100_v2.0.a1 Prupe.6G244100_v2.0.a1
pyrus_communis	pycom04g10200 pycom12g12510
rosa_chinensis	RchiOBHm_Chr3g0468251
rosa_laevigata	RLG00000024438
rosa_multiflora	Rmu_sc0004524.1_g000001 Rmu_sc0005436.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412860
rosa_rugosa	Rorug03G0094700
rosa_samantha	Rh3AG142200 Rh3BG163800 Rh3DG164400
rosa_wichuraiana	Rw3G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	4 cut(s)	113, 288, 684, 686
AclWI	GGATC	6 cut(s)	84, 97, 158, 171, 799, 812
AcoI	YGGCCR	1 cut(s)	818
AcsI	RAATTY	2 cut(s)	577, 755
AcuI	CTGAAG	2 cut(s)	530, 717
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	2 cut(s)	183, 227
AfeI	AGCGCT	1 cut(s)	29
AfiI	CCNNNNNNNGG	4 cut(s)	133, 134, 212, 769
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	1 cut(s)	833
AjnI	CCWGG	2 cut(s)	342, 796
AluBI	AGCT	4 cut(s)	352, 410, 514, 673
AluI	AGCT	4 cut(s)	352, 410, 514, 673
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	6 cut(s)	84, 97, 158, 171, 799, 812
Aor51HI	AGCGCT	1 cut(s)	29
AoxI	GGCC	5 cut(s)	82, 137, 588, 818, 876
ApaI	GGGCCC	1 cut(s)	141
ApeKI	GCWGC	3 cut(s)	299, 862, 872
ApoI	RAATTY	2 cut(s)	577, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AseI	ATTAAT	1 cut(s)	597
AspA2I	CCTAGG	2 cut(s)	85, 544
AspLEI	GCGC	2 cut(s)	30, 686
AspS9I	GGNCC	4 cut(s)	137, 138, 172, 308
AsuC2I	CCSGG	2 cut(s)	207, 518
AsuHPI	GGTGA	2 cut(s)	493, 715
AvaII	GGWCC	2 cut(s)	172, 308
AvrII	CCTAGG	2 cut(s)	85, 544
BaeGI	GKGCMC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	820
BamHI	GGATCC	3 cut(s)	89, 163, 804
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	4 cut(s)	99, 141, 203, 611
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	3 cut(s)	286, 859, 874
BccI	CCATC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	2 cut(s)	344, 798
BcnI	CCSGG	2 cut(s)	207, 518
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	86, 545
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	31
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	7 cut(s)	6, 111, 114, 300, 863, 873, 876
BlnI	CCTAGG	2 cut(s)	85, 544
BlsI	GCNGC	7 cut(s)	7, 112, 115, 301, 864, 874, 877
Bme1390I	CCNGG	4 cut(s)	207, 344, 518, 798
Bme18I	GGWCC	2 cut(s)	172, 308
BmgT120I	GGNCC	4 cut(s)	137, 138, 172, 308
BmiI	GGNNCC	7 cut(s)	39, 91, 138, 139, 165, 639, 806
BmrFI	CCNGG	4 cut(s)	207, 344, 518, 798
BmrI	ACTGGG	2 cut(s)	93, 141
BmuI	ACTGGG	2 cut(s)	93, 141
BpmI	CTGGAG	2 cut(s)	423, 819
Bpu10I	CCTNAGC	2 cut(s)	62, 654
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	207, 518
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	5 cut(s)	85, 111, 250, 343, 544
BsaWI	WCCGGW	2 cut(s)	174, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	267, 297, 851, 881
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 134, 212, 769
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	3 cut(s)	99, 147, 231
BseBI	CCWGG	2 cut(s)	344, 798
BseDI	CCNNGG	5 cut(s)	85, 111, 250, 343, 544
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	4 cut(s)	133, 134, 212, 769
BseMII	CTCAG	3 cut(s)	53, 332, 668
BseNI	ACTGG	3 cut(s)	99, 147, 231
BseRI	GAGGAG	2 cut(s)	239, 642
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	286, 859, 874
Bsh1236I	CGCG	4 cut(s)	113, 288, 684, 686
BshFI	GGCC	5 cut(s)	84, 139, 590, 820, 878
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	6 cut(s)	67, 81, 175, 206, 273, 517
BsiWI	CGTACG	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	133, 134, 212, 769
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	5 cut(s)	84, 139, 590, 820, 878
Bsp120I	GGGCCC	1 cut(s)	137
Bsp1286I	GDGCHC	4 cut(s)	99, 141, 203, 611
Bsp143I	GATC	4 cut(s)	89, 163, 277, 804
BspANI	GGCC	5 cut(s)	84, 139, 590, 820, 878
BspCNI	CTCAG	3 cut(s)	54, 331, 667
BspFNI	CGCG	4 cut(s)	113, 288, 684, 686
BspLI	GGNNCC	7 cut(s)	39, 91, 138, 139, 165, 639, 806
BspPI	GGATC	6 cut(s)	84, 97, 158, 171, 799, 812
BspQI	GCTCTTC	1 cut(s)	731
BspT107I	GGYRCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	99, 147, 231
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	5 cut(s)	85, 111, 250, 343, 544
BssMI	GATC	4 cut(s)	89, 163, 277, 804
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	85, 544
Bst2UI	CCWGG	2 cut(s)	344, 798
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	2 cut(s)	693, 731
BstACI	GRCGYC	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	128, 203, 257
BstDEI	CTNAG	3 cut(s)	62, 318, 654
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	4 cut(s)	113, 288, 684, 686
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	2 cut(s)	30, 686
BstKTI	GATC	4 cut(s)	92, 166, 280, 807
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	89, 163, 277, 804
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 407, 826
BstNI	CCWGG	2 cut(s)	344, 798
BstNSI	RCATGY	1 cut(s)	561
BstSCI	CCNGG	4 cut(s)	205, 342, 516, 796
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	4 cut(s)	113, 288, 684, 686
BstV1I	GCAGC	3 cut(s)	286, 859, 874
BstX2I	RGATCY	4 cut(s)	89, 163, 277, 804
BstXI	CCANNNNNNTGG	3 cut(s)	154, 394, 816
BstYI	RGATCY	4 cut(s)	89, 163, 277, 804
BsuRI	GGCC	5 cut(s)	84, 139, 590, 820, 878
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	694
BtsIMutI	CAGTG	2 cut(s)	191, 572
Cac8I	GCNNGC	3 cut(s)	128, 203, 257
CfoI	GCGC	2 cut(s)	30, 686
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	4 cut(s)	137, 138, 172, 308
Cfr42I	CCGCGG	1 cut(s)	114
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	182, 226
CviAII	CATG	2 cut(s)	558, 634
CviQI	GTAC	2 cut(s)	182, 226
DdeI	CTNAG	3 cut(s)	62, 318, 654
DpnI	GATC	4 cut(s)	91, 165, 279, 806
DpnII	GATC	4 cut(s)	89, 163, 277, 804
EaeI	YGGCCR	1 cut(s)	818
Eam1104I	CTCTTC	2 cut(s)	693, 731
EarI	CTCTTC	2 cut(s)	693, 731
Eco130I	CCWWGG	2 cut(s)	85, 544
Eco24I	GRGCYC	4 cut(s)	99, 141, 203, 611
Eco47I	GGWCC	2 cut(s)	172, 308
Eco47III	AGCGCT	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	530, 717
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	2 cut(s)	342, 796
EcoT14I	CCWWGG	2 cut(s)	85, 544
EcoT38I	GRGCYC	4 cut(s)	99, 141, 203, 611
ErhI	CCWWGG	2 cut(s)	85, 544
FaeI	CATG	2 cut(s)	561, 637
FaiI	YATR	7 cut(s)	371, 559, 635, 665, 725, 727, 765
FatI	CATG	2 cut(s)	557, 633
FauI	CCCGC	2 cut(s)	23, 135
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	7 cut(s)	6, 111, 114, 300, 863, 873, 876
FokI	GGATG	1 cut(s)	701
FriOI	GRGCYC	4 cut(s)	99, 141, 203, 611
Fsp4HI	GCNGC	7 cut(s)	6, 111, 114, 300, 863, 873, 876
FspBI	CTAG	2 cut(s)	86, 545
GlaI	GCGC	2 cut(s)	29, 685
GluI	GCNGC	7 cut(s)	6, 111, 114, 300, 863, 873, 876
GsuI	CTGGAG	2 cut(s)	423, 819
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	5 cut(s)	84, 139, 590, 820, 878
HapII	CCGG	6 cut(s)	67, 81, 175, 206, 273, 517
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	2 cut(s)	30, 686
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	561, 637
Hin6I	GCGC	2 cut(s)	28, 684
HinP1I	GCGC	2 cut(s)	28, 684
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	3 cut(s)	210, 619, 812
HpaII	CCGG	6 cut(s)	67, 81, 175, 206, 273, 517
HphI	GGTGA	2 cut(s)	493, 715
Hpy166II	GTNNAC	2 cut(s)	340, 551
Hpy188I	TCNGA	7 cut(s)	94, 168, 215, 331, 361, 510, 717
Hpy188III	TCNNGA	2 cut(s)	434, 839
Hpy8I	GTNNAC	2 cut(s)	340, 551
HpyAV	CCTTC	2 cut(s)	163, 470
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	2 cut(s)	180, 224
HpyCH4V	TGCA	2 cut(s)	23, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 407, 826
HpyF3I	CTNAG	3 cut(s)	62, 318, 654
HpySE526I	ACGT	2 cut(s)	180, 224
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	561, 637
HspAI	GCGC	2 cut(s)	28, 684
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	89, 163, 277, 804
LguI	GCTCTTC	1 cut(s)	731
LmnI	GCTCC	3 cut(s)	519, 643, 859
Lsp1109I	GCAGC	3 cut(s)	286, 859, 874
MaeI	CTAG	2 cut(s)	86, 545
MaeII	ACGT	2 cut(s)	180, 224
MaeIII	GTNAC	2 cut(s)	481, 676
MalI	GATC	4 cut(s)	91, 165, 279, 806
MboI	GATC	4 cut(s)	89, 163, 277, 804
MboII	GAAGA	6 cut(s)	302, 533, 638, 710, 748, 764
MflI	RGATCY	4 cut(s)	89, 163, 277, 804
MhlI	GDGCHC	4 cut(s)	99, 141, 203, 611
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	4 cut(s)	577, 627, 755, 776
MluNI	TGGCCA	1 cut(s)	820
MlyI	GAGTC	3 cut(s)	219, 628, 821
MmeI	TCCRAC	2 cut(s)	193, 762
Mox20I	TGGCCA	1 cut(s)	820
MscI	TGGCCA	1 cut(s)	820
MseI	TTAA	4 cut(s)	11, 582, 597, 708
Msp20I	TGGCCA	1 cut(s)	820
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	6 cut(s)	67, 81, 175, 206, 273, 517
MspR9I	CCNGG	4 cut(s)	207, 344, 518, 798
MvaI	CCWGG	2 cut(s)	344, 798
MvnI	CGCG	4 cut(s)	113, 288, 684, 686
MwoI	GCNNNNNNNGC	3 cut(s)	136, 407, 826
NciI	CCSGG	2 cut(s)	207, 518
NdeII	GATC	4 cut(s)	89, 163, 277, 804
NlaIII	CATG	2 cut(s)	561, 637
NlaIV	GGNNCC	7 cut(s)	39, 91, 138, 139, 165, 639, 806
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	1 cut(s)	561
PciI	ACATGT	1 cut(s)	557
PciSI	GCTCTTC	1 cut(s)	731
Pfl23II	CGTACG	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	7 cut(s)	7, 112, 115, 301, 864, 874, 877
PleI	GAGTC	3 cut(s)	218, 627, 820
PpsI	GAGTC	3 cut(s)	218, 627, 820
Ppu21I	YACGTR	1 cut(s)	225
PscI	ACATGT	1 cut(s)	557
PshBI	ATTAAT	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	342, 796
PspGI	CCWGG	2 cut(s)	342, 796
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	7 cut(s)	39, 91, 138, 139, 165, 639, 806
PspOMI	GGGCCC	1 cut(s)	137
PspPI	GGNCC	4 cut(s)	137, 138, 172, 308
PsuI	RGATCY	4 cut(s)	89, 163, 277, 804
RsaI	GTAC	2 cut(s)	183, 227
RsaNI	GTAC	2 cut(s)	182, 226
SacII	CCGCGG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	731
SaqAI	TTAA	4 cut(s)	11, 582, 597, 708
SatI	GCNGC	7 cut(s)	6, 111, 114, 300, 863, 873, 876
Sau3AI	GATC	4 cut(s)	89, 163, 277, 804
Sau96I	GGNCC	4 cut(s)	137, 138, 172, 308
SchI	GAGTC	3 cut(s)	219, 628, 821
ScrFI	CCNGG	4 cut(s)	207, 344, 518, 798
SduI	GDGCHC	4 cut(s)	99, 141, 203, 611
SfcI	CTRYAG	1 cut(s)	747
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	172, 308
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	4 cut(s)	577, 627, 755, 776
SspI	AATATT	1 cut(s)	471
SspMI	CTAG	2 cut(s)	86, 545
StyD4I	CCNGG	4 cut(s)	205, 342, 516, 796
StyI	CCWWGG	2 cut(s)	85, 544
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	2 cut(s)	183, 227
TaqI	TCGA	2 cut(s)	593, 611
TasI	AATT	4 cut(s)	577, 627, 755, 776
TauI	GCSGC	4 cut(s)	8, 113, 116, 878
Tru1I	TTAA	4 cut(s)	11, 582, 597, 708
Tru9I	TTAA	4 cut(s)	11, 582, 597, 708
TscAI	CASTG	2 cut(s)	191, 572
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	3 cut(s)	299, 862, 872
Tsp45I	GTSAC	1 cut(s)	481
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	2 cut(s)	191, 572
VpaK11BI	GGWCC	2 cut(s)	172, 308
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	2 cut(s)	577, 755
XceI	RCATGY	1 cut(s)	561
XmaJI	CCTAGG	2 cut(s)	85, 544
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	2 cut(s)	86, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.