FvH4_6g15970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017329
Physical Location & Seq
Reverse (-)
9973769 .. 9975869
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15970.t1

Sequence Viewer

Length: 906 bp
ATGTCATCTGAAGAAACAATAAATCCGATCGCACTCCGGGATTCGCTATTCACCGTGCTTGTCCGGTGTGTGCGAATTCTCAAAGCAGAGTCTGTATATCTGCTTTATCTCTCGTTTCTCTATCTCTTCCCCAAATCGTTCTACTGTATAGCCTATCCGACCCGTCGTAATTTCTTAAACGCCGAGCATCCCTTTCCGGACAAGTACCAATCCGACACTCTCTTACCTCTTGCTTTCACGTCCCTTACCTTCATCTTCTCCCACTTGGGATTCATCCACTACACTCTGGGTCTCTGGTCAATCACATATACACTACACCGTGGCCGACCAGTTAAACTTATCTCGGCTCTCTTTAACTCTGTATTTGTCTCCTTCTTTCCTATTCTCGGTTGTGTCATAGTCTCTATTCCCAACATGGTTTCGCTGTTTAATCTGGTTTATTCGGGGCAGAACTTATTTAAGGTAATTAGAGGGATTGAGAAGAGCAAGATGGATATGTTAGATGTTATTATCTTGCTGTGTAGTATCCAACTTCACTTGGAGTTGAACCTTACACCCTCAATTGTTGTGATTGAATCGCGCGGGCTGGTAGAGTCTATGAAAAAAAGCAGCTCATTGATGAAGGGAAACAAAATGTTGGGTTTTATGCTGCTTTCGATTTTCGGGACTTGTTCCCTGATTTTAGGATTGTTCAGCGCTTGGATTCTGGAAATGCAGTTGAGTTTAACAGGTGATCTGAGCCGTGGTGGTTGGTGGAGGATGGTGACTTTTCAATATCTGGTGCAAATTGTGATACTTTCAGTTCTTTTCATGCTCGTTTTATTGTTCAATACGGTAAGCAATACTGTTTTGTATCACTATTGTATCAAGGCACAACGGAATGATGGAGAAGAACAGGCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

34.34

Weight (kDa)

8.84

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15970
rosa_chinensis RchiOBHm_Chr3g0469671 RchiOBHm_Chr4g0407791
rosa_laevigata RLG00000008698
rosa_multiflora Rmu_sc0018796.1_g000003
rosa_roxburghii Rroxscaffold_6G00411550
rosa_rugosa Rorug03G0103400
rosa_samantha Rh3AG152900 Rh3BG176700 Rh3CG167600 Rh4DG140300
rosa_wichuraiana Rw3G014410 Rw4G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 580, 582
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 1 cut(s) 582
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 206
AfeI AGCGCT 1 cut(s) 697
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 4 cut(s) 547, 575, 773, 829
AjiI CACGTC 1 cut(s) 240
AluBI AGCT 1 cut(s) 612
AluI AGCT 1 cut(s) 612
Alw26I GTCTC 3 cut(s) 296, 373, 406
AlwNI CAGNNNCTG 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 196
Aor51HI AGCGCT 1 cut(s) 697
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 609, 649
ApoI RAATTY 1 cut(s) 75
AspLEI GCGC 2 cut(s) 582, 698
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 3 cut(s) 43, 743, 775
BaeI ACNNNNGTAYC 2 cut(s) 847, 880
BbvI GCAGC 2 cut(s) 621, 636
BccI CCATC 3 cut(s) 484, 754, 878
BceAI ACGGC 1 cut(s) 726
BciVI GTATCC 1 cut(s) 536
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 3 cut(s) 296, 373, 406
BfoI RGCGCY 1 cut(s) 699
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 2 cut(s) 610, 650
BlsI GCNGC 2 cut(s) 611, 651
Bme1390I CCNGG 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 319, 742
BsaWI WCCGGW 2 cut(s) 63, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 329
BseAI TCCGGA 1 cut(s) 196
BseDI CCNNGG 2 cut(s) 319, 742
BseGI GGATG 3 cut(s) 187, 273, 765
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 728
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 621, 636
Bsh1236I CGCG 2 cut(s) 580, 582
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 30
BsiSI CCGG 3 cut(s) 37, 64, 197
BslFI GGGAC 2 cut(s) 226, 679
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 3 cut(s) 296, 373, 406
BsmFI GGGAC 2 cut(s) 226, 679
BsnI GGCC 1 cut(s) 324
Bso31I GGTCTC 1 cut(s) 296
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 2 cut(s) 27, 733
BspACI CCGC 1 cut(s) 582
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 729
BspEI TCCGGA 1 cut(s) 196
BspFNI CGCG 2 cut(s) 580, 582
BspQI GCTCTTC 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 319, 742
BssMI GATC 2 cut(s) 27, 733
Bst4CI ACNGT 5 cut(s) 55, 146, 320, 835, 847
Bst6I CTCTTC 2 cut(s) 131, 476
BstC8I GCNNGC 1 cut(s) 584
BstDEI CTNAG 1 cut(s) 737
BstDSI CCRYGG 2 cut(s) 319, 742
BstF5I GGATG 3 cut(s) 187, 273, 765
BstFNI CGCG 2 cut(s) 580, 582
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 2 cut(s) 582, 698
BstKTI GATC 2 cut(s) 30, 736
BstMAI GTCTC 3 cut(s) 296, 373, 406
BstMBI GATC 2 cut(s) 27, 733
BstMCI CGRYCG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 36
BstUI CGCG 2 cut(s) 580, 582
BstV1I GCAGC 2 cut(s) 621, 636
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 1 cut(s) 324
BtgI CCRYGG 2 cut(s) 319, 742
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 3 cut(s) 187, 273, 765
Cac8I GCNNGC 1 cut(s) 584
CaiI CAGNNNCTG 1 cut(s) 92
CfoI GCGC 2 cut(s) 582, 698
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 415, 811
CviJI RGCY 7 cut(s) 152, 324, 347, 586, 612, 741, 899
CviKI_1 RGCY 7 cut(s) 152, 324, 347, 586, 612, 741, 899
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 737
DpnI GATC 2 cut(s) 29, 735
DpnII GATC 2 cut(s) 27, 733
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 131, 476
EarI CTCTTC 2 cut(s) 131, 476
Eco31I GGTCTC 1 cut(s) 296
Eco47III AGCGCT 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 75
FaeI CATG 2 cut(s) 418, 814
FaqI GGGAC 2 cut(s) 226, 679
FatI CATG 2 cut(s) 414, 810
FauI CCCGC 1 cut(s) 575
Fnu4HI GCNGC 2 cut(s) 610, 650
FokI GGATG 3 cut(s) 174, 260, 772
Fsp4HI GCNGC 2 cut(s) 610, 650
GlaI GCGC 2 cut(s) 581, 697
GluI GCNGC 2 cut(s) 610, 650
HaeII RGCGCY 1 cut(s) 699
HaeIII GGCC 1 cut(s) 324
HapII CCGG 3 cut(s) 37, 64, 197
HhaI GCGC 2 cut(s) 582, 698
Hin1II CATG 2 cut(s) 418, 814
Hin6I GCGC 2 cut(s) 580, 696
HinP1I GCGC 2 cut(s) 580, 696
HinfI GANTC 6 cut(s) 41, 89, 270, 575, 593, 703
HpaII CCGG 3 cut(s) 37, 64, 197
HphI GGTGA 3 cut(s) 43, 743, 775
Hpy188I TCNGA 5 cut(s) 10, 27, 159, 214, 738
Hpy188III TCNNGA 3 cut(s) 197, 664, 707
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 3 cut(s) 259, 382, 616
HpyCH4III ACNGT 5 cut(s) 55, 146, 320, 835, 847
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 715, 784
HpyF3I CTNAG 1 cut(s) 737
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 2 cut(s) 418, 814
HspAI GCGC 2 cut(s) 580, 696
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 27, 733
LguI GCTCTTC 1 cut(s) 476
Lsp1109I GCAGC 2 cut(s) 621, 636
LweI GCATC 1 cut(s) 196
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 763
MalI GATC 2 cut(s) 29, 735
MboI GATC 2 cut(s) 27, 733
MboII GAAGA 5 cut(s) 23, 118, 247, 493, 902
MfeI CAATTG 1 cut(s) 561
MluCI AATT 5 cut(s) 75, 169, 465, 561, 786
MlyI GAGTC 2 cut(s) 98, 602
MmeI TCCRAC 3 cut(s) 182, 237, 553
MnlI CCTC 4 cut(s) 237, 464, 568, 750
MroI TCCGGA 1 cut(s) 196
MseI TTAA 6 cut(s) 176, 333, 354, 429, 459, 725
MspI CCGG 3 cut(s) 37, 64, 197
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 1 cut(s) 561
MvnI CGCG 2 cut(s) 580, 582
NciI CCSGG 1 cut(s) 38
NdeII GATC 2 cut(s) 27, 733
NlaIII CATG 2 cut(s) 418, 814
NmeAIII GCCGAG 2 cut(s) 208, 323
NmuCI GTSAC 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 476
PfeI GAWTC 4 cut(s) 41, 270, 575, 703
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 2 cut(s) 611, 651
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 2 cut(s) 97, 601
PpsI GAGTC 2 cut(s) 97, 601
PstNI CAGNNNCTG 1 cut(s) 92
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 476
SaqAI TTAA 6 cut(s) 176, 333, 354, 429, 459, 725
SatI GCNGC 2 cut(s) 610, 650
Sau3AI GATC 2 cut(s) 27, 733
SchI GAGTC 2 cut(s) 98, 602
ScrFI CCNGG 1 cut(s) 38
SetI ASST 7 cut(s) 229, 242, 251, 465, 552, 614, 733
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 5 cut(s) 75, 169, 465, 561, 786
SsiI CCGC 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 5 cut(s) 55, 146, 320, 835, 847
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 656
TasI AATT 5 cut(s) 75, 169, 465, 561, 786
TfiI GAWTC 4 cut(s) 41, 270, 575, 703
Tru1I TTAA 6 cut(s) 176, 333, 354, 429, 459, 725
Tru9I TTAA 6 cut(s) 176, 333, 354, 429, 459, 725
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 2 cut(s) 609, 649
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 5 cut(s) 241, 262, 614, 635, 799
TspGWI ACGGA 1 cut(s) 892
XapI RAATTY 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.