Rh3BG176700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0017329
Physical Location & Seq
Reverse (-)
15318511 .. 15322471
3961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG176700.1

Sequence Viewer

Length: 900 bp
ATGTCTTCTCAAAAAAAAAAAAGTCCGGCCGCCATGGAATCGCTACGTCTGAACCTGTTCACCGTGCTTGGCGAGTGTGTGAGGATCCTCAAAGCAGAGTATCTATATCTGTTCTATCTTTCTTTTCTCTATCTGTTCCCCAAATCCTTCTCCTCTATAGCCTATCCGACCCGTCAAAATCTCTTAAAGGCCGAGCATCCGTTTCCGAACAAGTTCCAATCTGAGACTCTCTTAGCTCTTGCTTTCTCATCCCTTAGCTTCATCTTCTCCTACTCAGGATTCATCCACTACAGTTTGGGTCTCTGGTCAATCACATACGCAGTATATTATGGCCGACCAGTTAAACCAATCTCGGCTCTCTTTAAATCTGCATTTGTCTCATTCCTTCCTCTCCTCGGTATGGTCATAATTTCTATTCCGAACATGGTTACGTTGTTTAATCTTGTTCATTTGGGGCAAAATTTATTTAAGGTGATTAGAGGGAGTGAGGAGAGTAAGCTGGATATTTTAGATATTGTTATATTGCTGGGTAGCGTACATCTTCACTTGGAGTGGAACCTTGCATCGTCAATTGTTGTGATAGAATCGCGTGGGCTGGTAGAGTCTATGAGAAAAAGCAGCTCTTTGATGAAGGGAAACAAAATGTTGGGTTTGATGATGCTTTTGATTTTTGGGACTCCTGCCCTGATTTTAGGGTTGTTCAGTGATTGCATTCTACAAGTCCAGTTGGGTTTAACAGGGGATCTGAGCCATGGTGGATGGTGGAGGATGGTGACTTCTGAATTTGTGGTACAAATTGTGATAGTTTCAGTCCTTTTCACGCTCGTTTTGTTGTTCAACACAGTAAGCAATATCGTTTTGTATCTCTATTGCATCAAGGCAGAACGGACCACTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.65

Weight (kDa)

9.35

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15970
rosa_chinensis RchiOBHm_Chr3g0469671 RchiOBHm_Chr4g0407791
rosa_laevigata RLG00000008698
rosa_multiflora Rmu_sc0018796.1_g000003
rosa_roxburghii Rroxscaffold_6G00411550
rosa_rugosa Rorug03G0103400
rosa_samantha Rh3AG152900 Rh3BG176700 Rh3CG167600 Rh4DG140300
rosa_wichuraiana Rw3G014410 Rw4G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 589
AciI CCGC 1 cut(s) 30
AclWI GGATC 3 cut(s) 79, 92, 750
AcoI YGGCCR 2 cut(s) 27, 331
AcsI RAATTY 2 cut(s) 460, 782
AfaI GTAC 2 cut(s) 537, 792
AfiI CCNNNNNNNGG 2 cut(s) 395, 400
AgsI TTSAA 1 cut(s) 838
AluBI AGCT 4 cut(s) 236, 258, 499, 621
AluI AGCT 4 cut(s) 236, 258, 499, 621
Alw26I GTCTC 3 cut(s) 218, 305, 382
AlwI GGATC 3 cut(s) 79, 92, 750
AoxI GGCC 3 cut(s) 27, 189, 331
ApeKI GCWGC 1 cut(s) 618
ApoI RAATTY 2 cut(s) 460, 782
Asp700I GAANNNNTTC 2 cut(s) 56, 212
AspS9I GGNCC 1 cut(s) 888
AsuHPI GGTGA 3 cut(s) 52, 484, 784
AvaII GGWCC 1 cut(s) 888
BamHI GGATCC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 630
BccI CCATC 2 cut(s) 753, 763
BcoDI GTCTC 3 cut(s) 218, 305, 382
BfmI CTRYAG 2 cut(s) 156, 289
BisI GCNGC 2 cut(s) 30, 619
BlsI GCNGC 2 cut(s) 31, 620
Bme18I GGWCC 1 cut(s) 888
BmgT120I GGNCC 1 cut(s) 888
BmiI GGNNCC 2 cut(s) 86, 557
BmsI GCATC 4 cut(s) 205, 572, 648, 882
Bpu10I CCTNAGC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 33, 394, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 400
Bse1I ACTGG 2 cut(s) 338, 724
BseDI CCNNGG 3 cut(s) 33, 394, 751
BseGI GGATG 5 cut(s) 196, 248, 282, 764, 774
BseLI CCNNNNNNNGG 2 cut(s) 395, 400
BseMII CTCAG 3 cut(s) 213, 288, 737
BseNI ACTGG 2 cut(s) 338, 724
BseRI GAGGAG 3 cut(s) 142, 383, 503
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 630
BseYI CCCAGC 1 cut(s) 526
Bsh1236I CGCG 1 cut(s) 589
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 3 cut(s) 29, 191, 333
BsiEI CGRYCG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 2 cut(s) 395, 400
BsmAI GTCTC 3 cut(s) 218, 305, 382
BsmFI GGGAC 1 cut(s) 688
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 3 cut(s) 29, 191, 333
Bso31I GGTCTC 1 cut(s) 305
Bsp143I GATC 2 cut(s) 84, 742
Bsp19I CCATGG 2 cut(s) 33, 751
BspACI CCGC 1 cut(s) 30
BspANI GGCC 3 cut(s) 29, 191, 333
BspCNI CTCAG 3 cut(s) 214, 287, 738
BspFNI CGCG 1 cut(s) 589
BspLI GGNNCC 2 cut(s) 86, 557
BspPI GGATC 3 cut(s) 79, 92, 750
BspTNI GGTCTC 1 cut(s) 305
BsrI ACTGG 2 cut(s) 338, 724
BssECI CCNNGG 3 cut(s) 33, 394, 751
BssMI GATC 2 cut(s) 84, 742
BssT1I CCWWGG 2 cut(s) 33, 751
Bst4CI ACNGT 3 cut(s) 64, 293, 844
BstDEI CTNAG 5 cut(s) 222, 232, 254, 274, 746
BstDSI CCRYGG 2 cut(s) 33, 751
BstF5I GGATG 5 cut(s) 196, 248, 282, 764, 774
BstFNI CGCG 1 cut(s) 589
BstKTI GATC 2 cut(s) 87, 745
BstMAI GTCTC 3 cut(s) 218, 305, 382
BstMBI GATC 2 cut(s) 84, 742
BstMCI CGRYCG 1 cut(s) 30
BstSFI CTRYAG 2 cut(s) 156, 289
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 630
BstX2I RGATCY 2 cut(s) 84, 742
BstYI RGATCY 2 cut(s) 84, 742
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 3 cut(s) 29, 191, 333
BtgI CCRYGG 2 cut(s) 33, 751
BtsCI GGATG 5 cut(s) 196, 248, 282, 764, 774
BtsIMutI CAGTG 2 cut(s) 709, 895
Cfr13I GGNCC 1 cut(s) 888
Csp6I GTAC 2 cut(s) 536, 791
CviAII CATG 3 cut(s) 34, 424, 752
CviQI GTAC 2 cut(s) 536, 791
DdeI CTNAG 5 cut(s) 222, 232, 254, 274, 746
DpnI GATC 2 cut(s) 86, 744
DpnII GATC 2 cut(s) 84, 742
DraI TTTAAA 1 cut(s) 364
EaeI YGGCCR 2 cut(s) 27, 331
EagI CGGCCG 1 cut(s) 27
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 33, 751
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 888
Eco52I CGGCCG 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 33, 751
ErhI CCWWGG 2 cut(s) 33, 751
FaeI CATG 3 cut(s) 37, 427, 755
FalI AAGNNNNNCTT 2 cut(s) 607, 639
FaqI GGGAC 1 cut(s) 688
FatI CATG 3 cut(s) 33, 423, 751
Fnu4HI GCNGC 2 cut(s) 30, 619
FokI GGATG 5 cut(s) 183, 235, 269, 771, 781
Fsp4HI GCNGC 2 cut(s) 30, 619
GluI GCNGC 2 cut(s) 30, 619
GsaI CCCAGC 1 cut(s) 530
HaeIII GGCC 3 cut(s) 29, 191, 333
HapII CCGG 1 cut(s) 26
Hin1II CATG 3 cut(s) 37, 427, 755
HinfI GANTC 6 cut(s) 38, 226, 279, 584, 602, 676
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 52, 484, 784
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 7 cut(s) 51, 168, 207, 223, 420, 747, 781
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 3 cut(s) 157, 395, 625
HpyCH4III ACNGT 3 cut(s) 64, 293, 844
HpyCH4IV ACGT 2 cut(s) 46, 431
HpyCH4V TGCA 4 cut(s) 371, 563, 711, 873
HpyF3I CTNAG 5 cut(s) 222, 232, 254, 274, 746
HpySE526I ACGT 2 cut(s) 46, 431
Hsp92II CATG 3 cut(s) 37, 427, 755
Kzo9I GATC 2 cut(s) 84, 742
Lsp1109I GCAGC 1 cut(s) 630
LweI GCATC 4 cut(s) 205, 572, 648, 882
MaeII ACGT 2 cut(s) 46, 431
MaeIII GTNAC 2 cut(s) 427, 772
MalI GATC 2 cut(s) 86, 744
MboI GATC 2 cut(s) 84, 742
MboII GAAGA 2 cut(s) 256, 533
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 2 cut(s) 84, 742
MluCI AATT 5 cut(s) 408, 460, 570, 782, 795
MlyI GAGTC 3 cut(s) 220, 611, 670
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 8 cut(s) 75, 98, 163, 399, 404, 473, 481, 759
MroXI GAANNNNTTC 2 cut(s) 56, 212
MseI TTAA 6 cut(s) 185, 342, 363, 438, 468, 734
MspI CCGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 711
MvnI CGCG 1 cut(s) 589
NcoI CCATGG 2 cut(s) 33, 751
NdeII GATC 2 cut(s) 84, 742
NlaIII CATG 3 cut(s) 37, 427, 755
NlaIV GGNNCC 2 cut(s) 86, 557
NmeAIII GCCGAG 2 cut(s) 217, 332
NmuCI GTSAC 1 cut(s) 772
PctI GAATGC 1 cut(s) 711
PdmI GAANNNNTTC 2 cut(s) 56, 212
PfeI GAWTC 3 cut(s) 38, 279, 584
PkrI GCNGC 2 cut(s) 31, 620
PleI GAGTC 3 cut(s) 220, 610, 670
PpsI GAGTC 3 cut(s) 220, 610, 670
PspFI CCCAGC 1 cut(s) 526
PspN4I GGNNCC 2 cut(s) 86, 557
PspPI GGNCC 1 cut(s) 888
PsuI RGATCY 2 cut(s) 84, 742
RsaI GTAC 2 cut(s) 537, 792
RsaNI GTAC 2 cut(s) 536, 791
SaqAI TTAA 6 cut(s) 185, 342, 363, 438, 468, 734
SatI GCNGC 2 cut(s) 30, 619
Sau3AI GATC 2 cut(s) 84, 742
Sau96I GGNCC 1 cut(s) 888
SchI GAGTC 3 cut(s) 220, 611, 670
SetI ASST 9 cut(s) 49, 57, 238, 260, 434, 474, 501, 561, 623
SfaNI GCATC 4 cut(s) 205, 572, 648, 882
SfcI CTRYAG 2 cut(s) 156, 289
SinI GGWCC 1 cut(s) 888
Sse9I AATT 5 cut(s) 408, 460, 570, 782, 795
SsiI CCGC 1 cut(s) 30
StyI CCWWGG 2 cut(s) 33, 751
TaaI ACNGT 3 cut(s) 64, 293, 844
TaiI ACGT 2 cut(s) 49, 434
TasI AATT 5 cut(s) 408, 460, 570, 782, 795
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 3 cut(s) 38, 279, 584
Tru1I TTAA 6 cut(s) 185, 342, 363, 438, 468, 734
Tru9I TTAA 6 cut(s) 185, 342, 363, 438, 468, 734
TscAI CASTG 1 cut(s) 709
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 1 cut(s) 618
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 4 cut(s) 250, 271, 437, 644
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 888
XapI RAATTY 2 cut(s) 460, 782
XmnI GAANNNNTTC 2 cut(s) 56, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.