Rw4G011940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0017329
Physical Location & Seq
Reverse (-)
28168602 .. 28169740
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011940.1

Sequence Viewer

Length: 858 bp
ATGTCAGCGATGGAAATTCGGTCGCAGTTGGGGGAGTGTGTGCGGATACTGAAAGCAGACTGTGTATATCTCTTGTATCTCTCTTTTCTCTATCTGTTCCCCATATCCTTCTCCTCTCTAGCCTATCCGACCCGTCAAAATCTCCTAAAAGGGATGGCCGACCATCCTTTTCCGAACAAGTTCCAATCTGAGGCTCTCTTAGCTCTTACTTTCTCATCCCTCACCTTCATCTTCTCCTTCTCAGGATTCATCCACTACAGTTTGGGTCTCTGGTCAATCACATACACAGTATATTACTGCCGACCCTGTTCCGCTGCTCTCTTTAGATCTGCATTTTTGTCTTTTTTTCCTCTCCTTGGTTTGGTTTTAATTTCTATTCCCAACATGGTTACCTTGTTTAATCTTGTTCATTTGGGGCAAAATGTAATCACAGGGATTAAGGTGGATATTGTATATATTGTTTTGTTGCTGGGTTGTGTCCATCTTCACTTAGAGTGGAACCTTACACCCTCAATTGTTGTCATAGAATCGCGTGGCCTAGTAGAGTCTATGAGAACAAGCAGCTCGTTGATGAAGGGAAACAAAATGTTGGGTTTGATGATGCTTTTGATTTTTGGGACTTTTGCCCTCATTTTAGGCTTGTTCAGTGGTTGGATTCTACAACTCCAGTTGAGTTTAACAACAGGTTATCTCAGCTGGAGGATGCTCACTTCTGAATTTGTGCTACAGATTGTGATACTTTCACTTCTTTTTGTGGTCCTTTTGTTGTTTAACACCGTAAGCAATGTCGTTCTGTATGTCTATTGCGTCAAGGCACAACAACAACAACGGAAAGATGGAGAAAAACTTGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

32.18

Weight (kDa)

8.87

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15970
rosa_chinensis RchiOBHm_Chr3g0469671 RchiOBHm_Chr4g0407791
rosa_laevigata RLG00000008698
rosa_multiflora Rmu_sc0018796.1_g000003
rosa_roxburghii Rroxscaffold_6G00411550
rosa_rugosa Rorug03G0103400
rosa_samantha Rh3AG152900 Rh3BG176700 Rh3CG167600 Rh4DG140300
rosa_wichuraiana Rw3G014410 Rw4G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 532
AciI CCGC 2 cut(s) 43, 312
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 2 cut(s) 15, 716
AfiI CCNNNNNNNGG 3 cut(s) 190, 356, 361
AluBI AGCT 3 cut(s) 203, 564, 696
AluI AGCT 3 cut(s) 203, 564, 696
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 2 cut(s) 156, 535
ApeKI GCWGC 2 cut(s) 314, 561
ApoI RAATTY 2 cut(s) 15, 716
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 757
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 757
BbvI GCAGC 2 cut(s) 301, 573
BccI CCATC 5 cut(s) 4, 148, 171, 489, 830
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 119, 539
BfmI CTRYAG 2 cut(s) 256, 725
BfuI GTATCC 1 cut(s) 39
BglII AGATCT 1 cut(s) 326
BisI GCNGC 2 cut(s) 315, 562
BlsI GCNGC 2 cut(s) 316, 563
Bme18I GGWCC 1 cut(s) 757
BmgT120I GGNCC 1 cut(s) 757
BmiI GGNNCC 1 cut(s) 500
BmsI GCATC 2 cut(s) 591, 693
BpmI CTGGAG 2 cut(s) 650, 718
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 356, 361
Bse1I ACTGG 1 cut(s) 667
Bse3DI GCAATG 1 cut(s) 790
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 5 cut(s) 159, 163, 215, 249, 708
BseLI CCNNNNNNNGG 3 cut(s) 190, 356, 361
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 3 cut(s) 180, 255, 706
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 301, 573
BseYI CCCAGC 1 cut(s) 469
Bsh1236I CGCG 1 cut(s) 532
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 158, 537
BsiEI CGRYCG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 3 cut(s) 190, 356, 361
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 631
BsnI GGCC 2 cut(s) 158, 537
Bso31I GGTCTC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 326
BspACI CCGC 2 cut(s) 43, 312
BspANI GGCC 2 cut(s) 158, 537
BspCNI CTCAG 3 cut(s) 181, 254, 705
BspFNI CGCG 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 790
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 1 cut(s) 326
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 4 cut(s) 62, 260, 289, 778
BstDEI CTNAG 5 cut(s) 189, 199, 241, 490, 692
BstEII GGTNACC 1 cut(s) 388
BstF5I GGATG 5 cut(s) 159, 163, 215, 249, 708
BstFNI CGCG 1 cut(s) 532
BstKTI GATC 1 cut(s) 329
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 326
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstPI GGTNACC 1 cut(s) 388
BstSFI CTRYAG 2 cut(s) 256, 725
BstUI CGCG 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 301, 573
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuI GTATCC 1 cut(s) 39
BsuRI GGCC 2 cut(s) 158, 537
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 5 cut(s) 159, 163, 215, 249, 708
BtsIMutI CAGTG 1 cut(s) 652
Cfr13I GGNCC 1 cut(s) 757
CseI GACGC 1 cut(s) 796
CviAII CATG 1 cut(s) 385
CviJI RGCY 8 cut(s) 122, 158, 194, 203, 537, 564, 639, 696
CviKI_1 RGCY 8 cut(s) 122, 158, 194, 203, 537, 564, 639, 696
DdeI CTNAG 5 cut(s) 189, 199, 241, 490, 692
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 757
Eco91I GGTNACC 1 cut(s) 388
EcoO65I GGTNACC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 388
FaqI GGGAC 1 cut(s) 631
FatI CATG 1 cut(s) 384
Fnu4HI GCNGC 2 cut(s) 315, 562
FokI GGATG 5 cut(s) 150, 166, 202, 236, 715
Fsp4HI GCNGC 2 cut(s) 315, 562
FspBI CTAG 2 cut(s) 119, 539
GluI GCNGC 2 cut(s) 315, 562
GsaI CCCAGC 1 cut(s) 473
GsuI CTGGAG 2 cut(s) 650, 718
HaeIII GGCC 2 cut(s) 158, 537
HgaI GACGC 1 cut(s) 796
Hin1II CATG 1 cut(s) 388
HinfI GANTC 4 cut(s) 246, 527, 545, 655
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 4 cut(s) 129, 174, 190, 715
Hpy188III TCNNGA 1 cut(s) 243
HpyAV CCTTC 4 cut(s) 118, 235, 247, 568
HpyCH4III ACNGT 4 cut(s) 62, 260, 289, 778
HpyCH4V TGCA 2 cut(s) 332, 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 5 cut(s) 189, 199, 241, 490, 692
Hsp92II CATG 1 cut(s) 388
Kzo9I GATC 1 cut(s) 326
LpnPI CCDG 8 cut(s) 228, 256, 319, 417, 455, 669, 680, 682
Lsp1109I GCAGC 2 cut(s) 301, 573
LweI GCATC 2 cut(s) 591, 693
MaeI CTAG 2 cut(s) 119, 539
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 328
MboI GATC 1 cut(s) 326
MboII GAAGA 2 cut(s) 223, 476
MfeI CAATTG 1 cut(s) 513
MflI RGATCY 1 cut(s) 326
MluCI AATT 4 cut(s) 15, 369, 513, 716
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 2 cut(s) 152, 632
MnlI CCTC 7 cut(s) 124, 184, 230, 360, 520, 638, 693
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 5 cut(s) 368, 399, 438, 677, 771
MspA1I CMGCKG 2 cut(s) 314, 696
MunI CAATTG 1 cut(s) 513
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 326
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 246, 527, 655
PkrI GCNGC 2 cut(s) 316, 563
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
PspEI GGTNACC 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 469
PspN4I GGNNCC 1 cut(s) 500
PspPI GGNCC 1 cut(s) 757
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 696
SaqAI TTAA 5 cut(s) 368, 399, 438, 677, 771
SatI GCNGC 2 cut(s) 315, 562
Sau3AI GATC 1 cut(s) 326
Sau96I GGNCC 1 cut(s) 757
SchI GAGTC 1 cut(s) 554
SetI ASST 8 cut(s) 205, 227, 395, 444, 504, 566, 688, 698
SfaNI GCATC 2 cut(s) 591, 693
SfcI CTRYAG 2 cut(s) 256, 725
SinI GGWCC 1 cut(s) 757
Sse9I AATT 4 cut(s) 15, 369, 513, 716
SsiI CCGC 2 cut(s) 43, 312
SspMI CTAG 2 cut(s) 119, 539
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 4 cut(s) 62, 260, 289, 778
TaqII GACCGA 1 cut(s) 9
TasI AATT 4 cut(s) 15, 369, 513, 716
TfiI GAWTC 3 cut(s) 246, 527, 655
Tru1I TTAA 5 cut(s) 368, 399, 438, 677, 771
Tru9I TTAA 5 cut(s) 368, 399, 438, 677, 771
TscAI CASTG 1 cut(s) 652
TseI GCWGC 2 cut(s) 314, 561
TspDTI ATGAA 4 cut(s) 217, 238, 398, 587
TspGWI ACGGA 1 cut(s) 844
TspRI CASTG 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 757
XapI RAATTY 2 cut(s) 15, 716
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 119, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.