Rh4DG140300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017329
Physical Location & Seq
Reverse (-)
27861145 .. 27873871
12727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG140300.1

Sequence Viewer

Length: 960 bp
ATGCAAGAAGAAGATTCTTTTGAAAGGACCCATCTTGCTTATAAAATTGCACACAAATCTTTACAGAGAACACAAGTAAAAGGCACAAGCTTGCCCCCAGTGATATATATTCCTGCGTCCGCCACTGATGTCAGCGATGGAAATTCGGTCGCAGTTGGGGGAGTGTGTGCGGATACTGAAAGCAGACTGTGTATCTCTCTGTTCCCCATATCCTTCTCCTCTCTAGCCTATCCGACCCGTCAAAATCTCCTAAAAGGGATGGCCGACCATCCTTTTCCGAACAAGTTCCAATCTGAGGCTCTCTTAGCTCTTACTTTCTCATCCCTCACCTTCATCTTCTCCTTCTCAGGATTCATCCACTACAGTTTGGGTCTCTGGTCAATCGCATACACAGTATATTATGGCCGACCCTGTTCCGCTGCTCTCTTTAGATCTGCATTTTTCTCTTTTTTCCCTCTCCTTGGCTTGGTTTTAAGTTCTATTCCCAACATGGTTACCTTGTTTAATCTTGTTCATTTGGGGCAAAATGTAATCACAGGGATTGAGGTGGATATTGTATATATTGTTTTGTTGCTGGGTTGTGTCCATCTTCACGTAGAGTGGAACCTTACATCCTCAATTGTTGTCATAGAATCGCGTGGCCTAGTAGAGTCTATGAGAAAAAGCAGCTCATTGATGAAGGGAAGCAAAATGTTGGGTTTGATGATGCTTTTGATTTTTGGGACTTTTGCCCTCATTTTAGGCATGTTCAGTGGTTGGGTTCTACAACTCCAGTTGAGTTTAACAACAGGTTATCTCAGCTGGAGGATGCTCACTTCTGAATTTGTGCTACAGATTGTGATACTTTCACTTCTTTTCATGGTCCTTTTGTTGTTTAACACCGTAAGCAATGTCGTTCTGTATGTCTATTGCGTCAAGGCACAACAACAACGGAAAGATGGAGAAAAACTTGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

35.45

Weight (kDa)

8.23

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15970
rosa_chinensis RchiOBHm_Chr3g0469671 RchiOBHm_Chr4g0407791
rosa_laevigata RLG00000008698
rosa_multiflora Rmu_sc0018796.1_g000003
rosa_roxburghii Rroxscaffold_6G00411550
rosa_rugosa Rorug03G0103400
rosa_samantha Rh3AG152900 Rh3BG176700 Rh3CG167600 Rh4DG140300
rosa_wichuraiana Rw3G014410 Rw4G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AccII CGCG 1 cut(s) 637
AciI CCGC 3 cut(s) 120, 170, 417
AcoI YGGCCR 2 cut(s) 261, 403
AcsI RAATTY 2 cut(s) 142, 821
AfiI CCNNNNNNNGG 3 cut(s) 295, 461, 466
AgsI TTSAA 1 cut(s) 23
AloI GAACNNNNNNTCC 2 cut(s) 596, 628
AluBI AGCT 4 cut(s) 90, 308, 669, 801
AluI AGCT 4 cut(s) 90, 308, 669, 801
Alw26I GTCTC 1 cut(s) 377
AoxI GGCC 3 cut(s) 261, 403, 640
ApeKI GCWGC 2 cut(s) 419, 666
ApoI RAATTY 2 cut(s) 142, 821
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 27, 862
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 27, 862
BbvI GCAGC 2 cut(s) 406, 678
BccI CCATC 6 cut(s) 39, 131, 253, 276, 594, 932
BciVI GTATCC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 2 cut(s) 224, 644
BfmI CTRYAG 2 cut(s) 361, 830
BfuI GTATCC 1 cut(s) 166
BglII AGATCT 1 cut(s) 431
BisI GCNGC 2 cut(s) 420, 667
BlsI GCNGC 2 cut(s) 421, 668
Bme18I GGWCC 2 cut(s) 27, 862
BmgT120I GGNCC 2 cut(s) 27, 862
BmiI GGNNCC 2 cut(s) 29, 605
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 2 cut(s) 696, 798
BmuI ACTGGG 1 cut(s) 92
BpmI CTGGAG 2 cut(s) 755, 823
BsaAI YACGTR 1 cut(s) 595
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 461, 466
Bse1I ACTGG 2 cut(s) 98, 772
Bse3DI GCAATG 1 cut(s) 895
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 6 cut(s) 264, 268, 320, 354, 611, 813
BseLI CCNNNNNNNGG 3 cut(s) 295, 461, 466
BseMI GCAATG 1 cut(s) 895
BseMII CTCAG 3 cut(s) 285, 360, 811
BseNI ACTGG 2 cut(s) 98, 772
BseRI GAGGAG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 406, 678
BseYI CCCAGC 1 cut(s) 574
Bsh1236I CGCG 1 cut(s) 637
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 263, 405, 642
BsiEI CGRYCG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 3 cut(s) 295, 461, 466
BsmAI GTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 3 cut(s) 263, 405, 642
Bso31I GGTCTC 1 cut(s) 377
Bsp143I GATC 1 cut(s) 431
BspACI CCGC 3 cut(s) 120, 170, 417
BspANI GGCC 3 cut(s) 263, 405, 642
BspCNI CTCAG 3 cut(s) 286, 359, 810
BspFNI CGCG 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 29, 605
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 895
BsrI ACTGG 2 cut(s) 98, 772
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 460
Bst4CI ACNGT 4 cut(s) 189, 365, 394, 883
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 4 cut(s) 294, 304, 346, 797
BstEII GGTNACC 1 cut(s) 493
BstF5I GGATG 6 cut(s) 264, 268, 320, 354, 611, 813
BstFNI CGCG 1 cut(s) 637
BstKTI GATC 1 cut(s) 434
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 1 cut(s) 431
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 748
BstPI GGTNACC 1 cut(s) 493
BstSFI CTRYAG 2 cut(s) 361, 830
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 2 cut(s) 406, 678
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 3 cut(s) 263, 405, 642
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 6 cut(s) 264, 268, 320, 354, 611, 813
BtsIMutI CAGTG 3 cut(s) 105, 123, 757
Cac8I GCNNGC 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 27, 862
CseI GACGC 2 cut(s) 105, 901
CviAII CATG 3 cut(s) 490, 745, 859
DdeI CTNAG 4 cut(s) 294, 304, 346, 797
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
EaeI YGGCCR 2 cut(s) 261, 403
EciI GGCGGA 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 460
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 27, 862
Eco91I GGTNACC 1 cut(s) 493
EcoO109I RGGNCCY 1 cut(s) 27
EcoO65I GGTNACC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 3 cut(s) 493, 748, 862
FaqI GGGAC 1 cut(s) 736
FatI CATG 3 cut(s) 489, 744, 858
Fnu4HI GCNGC 2 cut(s) 420, 667
FokI GGATG 6 cut(s) 255, 271, 307, 341, 598, 820
Fsp4HI GCNGC 2 cut(s) 420, 667
FspBI CTAG 2 cut(s) 224, 644
GluI GCNGC 2 cut(s) 420, 667
GsaI CCCAGC 1 cut(s) 578
GsuI CTGGAG 2 cut(s) 755, 823
HaeIII GGCC 3 cut(s) 263, 405, 642
HgaI GACGC 2 cut(s) 105, 901
Hin1II CATG 3 cut(s) 493, 748, 862
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 4 cut(s) 14, 351, 632, 650
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 4 cut(s) 234, 279, 295, 820
Hpy188III TCNNGA 1 cut(s) 348
HpyAV CCTTC 4 cut(s) 223, 340, 352, 673
HpyCH4III ACNGT 4 cut(s) 189, 365, 394, 883
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 4 cut(s) 4, 50, 437, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 4 cut(s) 294, 304, 346, 797
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 3 cut(s) 493, 748, 862
Kzo9I GATC 1 cut(s) 431
Lsp1109I GCAGC 2 cut(s) 406, 678
LweI GCATC 2 cut(s) 696, 798
MaeI CTAG 2 cut(s) 224, 644
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 493
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MboII GAAGA 4 cut(s) 20, 23, 328, 581
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 1 cut(s) 431
MluCI AATT 4 cut(s) 45, 142, 618, 821
MlyI GAGTC 1 cut(s) 659
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 8 cut(s) 229, 289, 335, 465, 538, 625, 743, 798
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 4 cut(s) 473, 504, 782, 876
MspA1I CMGCKG 2 cut(s) 419, 801
MunI CAATTG 1 cut(s) 618
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 431
NlaIII CATG 3 cut(s) 493, 748, 862
NlaIV GGNNCC 2 cut(s) 29, 605
NspI RCATGY 1 cut(s) 748
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 3 cut(s) 14, 351, 632
PkrI GCNGC 2 cut(s) 421, 668
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
Ppu21I YACGTR 1 cut(s) 595
PpuMI RGGWCCY 1 cut(s) 27
PsiI TTATAA 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 29, 605
PspPI GGNCC 2 cut(s) 27, 862
PspPPI RGGWCCY 1 cut(s) 27
PsuI RGATCY 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 801
SaqAI TTAA 4 cut(s) 473, 504, 782, 876
SatI GCNGC 2 cut(s) 420, 667
Sau3AI GATC 1 cut(s) 431
Sau96I GGNCC 2 cut(s) 27, 862
SchI GAGTC 1 cut(s) 659
SfaNI GCATC 2 cut(s) 696, 798
SfcI CTRYAG 2 cut(s) 361, 830
SinI GGWCC 2 cut(s) 27, 862
Sse9I AATT 4 cut(s) 45, 142, 618, 821
SsiI CCGC 3 cut(s) 120, 170, 417
SspMI CTAG 2 cut(s) 224, 644
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 4 cut(s) 189, 365, 394, 883
TaiI ACGT 1 cut(s) 597
TaqII GACCGA 1 cut(s) 136
TasI AATT 4 cut(s) 45, 142, 618, 821
TfiI GAWTC 3 cut(s) 14, 351, 632
Tru1I TTAA 4 cut(s) 473, 504, 782, 876
Tru9I TTAA 4 cut(s) 473, 504, 782, 876
TscAI CASTG 3 cut(s) 105, 130, 757
TseI GCWGC 2 cut(s) 419, 666
TspDTI ATGAA 5 cut(s) 322, 343, 503, 692, 847
TspGWI ACGGA 1 cut(s) 946
TspRI CASTG 3 cut(s) 105, 130, 757
VpaK11BI GGWCC 2 cut(s) 27, 862
XapI RAATTY 2 cut(s) 142, 821
XceI RCATGY 1 cut(s) 748
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 2 cut(s) 224, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.