Rmu_sc0018796.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018796.1
OG0017329
Physical Location & Seq
Reverse (-)
20676 .. 22779
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018796.1_g000003.1.cds

Sequence Viewer

Length: 1374 bp
atgtggcaacctcccatcatgccccagtgtttcataaccgcttcagaaaccctccccccatctcccaacccgaccgccatgtcttctcaaaaaaaaaaaagtccggccgccatggaatcgctacgtctgaacctgttcaccgtgcttggcgagtgtgtgaggatcctcaaagcagagtatctatatctgttctatctttcttttctctatctgttccccaaatccttctcctctatagcctatccgacccgtcaaaatctcttgaaggccgagcatccgtttccgaacaagttccaatctgagactctcttagctcttgctttctcatcccttagcttcatcttctcctactcaggattcatccactacagtttgggtctctggtcaatcacatacgcagtatattatggccgaccagttaaactaatctcggctctctttaaatctgcatttgtctcattccttcctctcctcggtatggtcataatttctattccgaacatggttacgttgtttaatcttgttcatttggggcaaaatttatttaaggtgattagagggagtgaggagagtaagctggatattttagatattgttatattgctgggtagtgtacatcttcacttggagtggaaccttgcatcgtcaattgttgtgatagaatcgcgtgggctggtagagtctatgagaaaaagcagctctttgatgaagggaaacaaaatgttgggtttgatgatgcttttgatttttgggactcctgccctgattttagggttgttcagtgattggattctacaagtccagttgggtttaacaggggatctgagccatggtggatgtaagcaatatcgttttgtatctctattgcatcaaggcagaacggaccactcactgaatgaggtcagtcaccgaaaaggcaaagtcgagaagtcaagaattcgaccagtcaagttactattcactgccactggacatgggtttacacccggtgtttttcttgcccggtcaacactgttcacggtcactgttcacccatgtttaattgaaaacaacggcccagatcaaaggaccgttgctttcaaatttgctattaatttcattaccgtcggatccacacatttaattgaaaacaacggcccagatcaaaggaccgttgctttcaaatttgctgatatccaacggaaagcttccacgcgtcaagggacgtcccacttgttctcgctaggcaacaaaatcgtgttcctcacgtgctgcagcgtgttctgcttggtccgtcttctccacgcgagcgtccagcgcgttttggtatggacgtcagtgactaacgtcacccatgtgctgcgcttgggccgagctggcagagcttttgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

457

Amino Acids

51.03

Weight (kDa)

9.88

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15970
rosa_chinensis RchiOBHm_Chr3g0469671 RchiOBHm_Chr4g0407791
rosa_laevigata RLG00000008698
rosa_multiflora Rmu_sc0018796.1_g000003
rosa_roxburghii Rroxscaffold_6G00411550
rosa_rugosa Rorug03G0103400
rosa_samantha Rh3AG152900 Rh3BG176700 Rh3CG167600 Rh4DG140300
rosa_wichuraiana Rw3G014410 Rw4G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 79
AatII GACGTC 2 cut(s) 1208, 1316
AccII CGCG 4 cut(s) 667, 1195, 1286, 1299
AciI CCGC 3 cut(s) 39, 75, 108
AclWI GGATC 5 cut(s) 157, 170, 828, 1104, 1117
AcoI YGGCCR 2 cut(s) 105, 409
AcsI RAATTY 4 cut(s) 538, 936, 1082, 1163
AcuI CTGAAG 1 cut(s) 27
AcvI CACGTG 1 cut(s) 1248
AcyI GRCGYC 2 cut(s) 1205, 1313
AdeI CACNNNGTG 1 cut(s) 989
AfaI GTAC 1 cut(s) 615
AfiI CCNNNNNNNGG 2 cut(s) 473, 478
AflIII ACRYGT 1 cut(s) 1193
AgsI TTSAA 5 cut(s) 265, 1046, 1081, 1127, 1162
AleI CACNNNNGTG 1 cut(s) 1334
AluBI AGCT 7 cut(s) 314, 336, 577, 699, 1187, 1355, 1364
AluI AGCT 7 cut(s) 314, 336, 577, 699, 1187, 1355, 1364
Alw26I GTCTC 3 cut(s) 296, 383, 460
AlwI GGATC 5 cut(s) 157, 170, 828, 1104, 1117
AoxI GGCC 6 cut(s) 105, 267, 409, 1054, 1135, 1348
ApeKI GCWGC 4 cut(s) 696, 1251, 1254, 1339
ApoI RAATTY 4 cut(s) 538, 936, 1082, 1163
AseI ATTAAT 1 cut(s) 1092
Asp700I GAANNNNTTC 2 cut(s) 134, 290
AspLEI GCGC 2 cut(s) 1299, 1344
AspS9I GGNCC 7 cut(s) 883, 1055, 1068, 1136, 1149, 1270, 1348
AsuC2I CCSGG 2 cut(s) 987, 1003
AsuHPI GGTGA 5 cut(s) 130, 562, 899, 1022, 1321
AvaII GGWCC 4 cut(s) 883, 1068, 1149, 1270
BamHI GGATCC 2 cut(s) 162, 1109
BbrPI CACGTG 1 cut(s) 1248
BbsI GAAGAC 2 cut(s) 75, 1268
BbvI GCAGC 4 cut(s) 708, 1238, 1266, 1326
BccI CCATC 2 cut(s) 23, 67
BceAI ACGGC 2 cut(s) 1069, 1150
BcgI CGANNNNNNTGC 2 cut(s) 1216, 1250
BcnI CCSGG 2 cut(s) 987, 1003
BcoDI GTCTC 3 cut(s) 296, 383, 460
BfaI CTAG 2 cut(s) 1223, 1372
BfmI CTRYAG 3 cut(s) 234, 367, 1252
BglI GCCNNNNNGGC 1 cut(s) 1356
BisI GCNGC 5 cut(s) 108, 697, 1252, 1255, 1340
BlsI GCNGC 5 cut(s) 109, 698, 1253, 1256, 1341
Bme1390I CCNGG 2 cut(s) 987, 1003
Bme18I GGWCC 4 cut(s) 883, 1068, 1149, 1270
BmgT120I GGNCC 7 cut(s) 883, 1055, 1068, 1136, 1149, 1270, 1348
BmiI GGNNCC 3 cut(s) 164, 635, 1111
BmrFI CCNGG 2 cut(s) 987, 1003
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 4 cut(s) 283, 650, 726, 877
BmuI ACTGGG 1 cut(s) 19
BoxI GACNNNNGTC 1 cut(s) 1325
BpiI GAAGAC 2 cut(s) 75, 1268
Bpu10I CCTNAGC 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 987, 1003
BsaAI YACGTR 1 cut(s) 1248
BsaHI GRCGYC 2 cut(s) 1205, 1313
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 111, 472, 829
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 478
Bse1I ACTGG 5 cut(s) 25, 416, 802, 944, 973
BseDI CCNNGG 3 cut(s) 111, 472, 829
BseGI GGATG 4 cut(s) 274, 326, 360, 842
BseLI CCNNNNNNNGG 2 cut(s) 473, 478
BseMII CTCAG 3 cut(s) 291, 366, 815
BseNI ACTGG 5 cut(s) 25, 416, 802, 944, 973
BseRI GAGGAG 3 cut(s) 220, 461, 581
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 708, 1238, 1266, 1326
BseYI CCCAGC 1 cut(s) 604
Bsh1236I CGCG 4 cut(s) 667, 1195, 1286, 1299
Bsh1285I CGRYCG 2 cut(s) 75, 108
BshFI GGCC 6 cut(s) 107, 269, 411, 1056, 1137, 1350
BsiEI CGRYCG 2 cut(s) 75, 108
BsiSI CCGG 3 cut(s) 104, 987, 1003
BslFI GGGAC 3 cut(s) 766, 1192, 1216
BslI CCNNNNNNNGG 2 cut(s) 473, 478
BsmAI GTCTC 3 cut(s) 296, 383, 460
BsmFI GGGAC 3 cut(s) 766, 1192, 1216
BsnI GGCC 6 cut(s) 107, 269, 411, 1056, 1137, 1350
Bso31I GGTCTC 1 cut(s) 383
Bsp1407I TGTACA 1 cut(s) 613
Bsp143I GATC 5 cut(s) 162, 820, 1060, 1109, 1141
Bsp19I CCATGG 2 cut(s) 111, 829
BspACI CCGC 3 cut(s) 39, 75, 108
BspANI GGCC 6 cut(s) 107, 269, 411, 1056, 1137, 1350
BspCNI CTCAG 3 cut(s) 292, 365, 816
BspFNI CGCG 4 cut(s) 667, 1195, 1286, 1299
BspLI GGNNCC 3 cut(s) 164, 635, 1111
BspMAI CTGCAG 1 cut(s) 1256
BspPI GGATC 5 cut(s) 157, 170, 828, 1104, 1117
BspTNI GGTCTC 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 613
BsrI ACTGG 5 cut(s) 25, 416, 802, 944, 973
BssECI CCNNGG 3 cut(s) 111, 472, 829
BssMI GATC 5 cut(s) 162, 820, 1060, 1109, 1141
BssNI GRCGYC 2 cut(s) 1205, 1313
BssT1I CCWWGG 2 cut(s) 111, 829
Bst4CI ACNGT 8 cut(s) 142, 371, 1014, 1021, 1027, 1072, 1105, 1153
BstACI GRCGYC 2 cut(s) 1205, 1313
BstAUI TGTACA 1 cut(s) 613
BstBAI YACGTR 1 cut(s) 1248
BstC8I GCNNGC 2 cut(s) 1288, 1357
BstDEI CTNAG 5 cut(s) 300, 310, 332, 352, 824
BstDSI CCRYGG 2 cut(s) 111, 829
BstF5I GGATG 4 cut(s) 274, 326, 360, 842
BstFNI CGCG 4 cut(s) 667, 1195, 1286, 1299
BstHHI GCGC 2 cut(s) 1299, 1344
BstKTI GATC 5 cut(s) 165, 823, 1063, 1112, 1144
BstMAI GTCTC 3 cut(s) 296, 383, 460
BstMBI GATC 5 cut(s) 162, 820, 1060, 1109, 1141
BstMCI CGRYCG 2 cut(s) 75, 108
BstMWI GCNNNNNNNGC 4 cut(s) 1263, 1296, 1356, 1361
BstPAI GACNNNNGTC 1 cut(s) 1325
BstSCI CCNGG 2 cut(s) 985, 1001
BstSFI CTRYAG 3 cut(s) 234, 367, 1252
BstUI CGCG 4 cut(s) 667, 1195, 1286, 1299
BstV1I GCAGC 4 cut(s) 708, 1238, 1266, 1326
BstV2I GAAGAC 2 cut(s) 75, 1268
BstX2I RGATCY 3 cut(s) 162, 820, 1109
BstYI RGATCY 3 cut(s) 162, 820, 1109
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 6 cut(s) 107, 269, 411, 1056, 1137, 1350
BtgI CCRYGG 2 cut(s) 111, 829
BtsCI GGATG 4 cut(s) 274, 326, 360, 842
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 8 cut(s) 32, 787, 890, 960, 966, 1010, 1023, 1323
Cac8I GCNNGC 2 cut(s) 1288, 1357
CfoI GCGC 2 cut(s) 1299, 1344
Cfr13I GGNCC 7 cut(s) 883, 1055, 1068, 1136, 1149, 1270, 1348
CseI GACGC 2 cut(s) 1184, 1279
Csp6I GTAC 1 cut(s) 614
CviAII CATG 8 cut(s) 19, 79, 112, 502, 830, 974, 1035, 1334
CviQI GTAC 1 cut(s) 614
DdeI CTNAG 5 cut(s) 300, 310, 332, 352, 824
DpnI GATC 5 cut(s) 164, 822, 1062, 1111, 1143
DpnII GATC 5 cut(s) 162, 820, 1060, 1109, 1141
DraI TTTAAA 1 cut(s) 442
DraIII CACNNNGTG 1 cut(s) 989
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 2 cut(s) 105, 409
EagI CGGCCG 1 cut(s) 105
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 111, 829
Eco31I GGTCTC 1 cut(s) 383
Eco32I GATATC 1 cut(s) 1174
Eco47I GGWCC 4 cut(s) 883, 1068, 1149, 1270
Eco52I CGGCCG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 1248
EcoRI GAATTC 1 cut(s) 936
EcoRV GATATC 1 cut(s) 1174
EcoT14I CCWWGG 2 cut(s) 111, 829
ErhI CCWWGG 2 cut(s) 111, 829
FaeI CATG 8 cut(s) 22, 82, 115, 505, 833, 977, 1038, 1337
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FaqI GGGAC 3 cut(s) 766, 1192, 1216
FatI CATG 8 cut(s) 18, 78, 111, 501, 829, 973, 1034, 1333
Fnu4HI GCNGC 5 cut(s) 108, 697, 1252, 1255, 1340
FokI GGATG 4 cut(s) 261, 313, 347, 849
Fsp4HI GCNGC 5 cut(s) 108, 697, 1252, 1255, 1340
FspBI CTAG 2 cut(s) 1223, 1372
GlaI GCGC 2 cut(s) 1298, 1343
GluI GCNGC 5 cut(s) 108, 697, 1252, 1255, 1340
GsaI CCCAGC 1 cut(s) 608
HaeIII GGCC 6 cut(s) 107, 269, 411, 1056, 1137, 1350
HapII CCGG 3 cut(s) 104, 987, 1003
HgaI GACGC 2 cut(s) 1184, 1279
HhaI GCGC 2 cut(s) 1299, 1344
Hin1I GRCGYC 2 cut(s) 1205, 1313
Hin1II CATG 8 cut(s) 22, 82, 115, 505, 833, 977, 1038, 1337
Hin6I GCGC 2 cut(s) 1297, 1342
HinP1I GCGC 2 cut(s) 1297, 1342
HincII GTYRAC 1 cut(s) 1008
HindII GTYRAC 1 cut(s) 1008
HindIII AAGCTT 1 cut(s) 1185
HinfI GANTC 7 cut(s) 116, 304, 357, 662, 680, 754, 790
HpaII CCGG 3 cut(s) 104, 987, 1003
HphI GGTGA 5 cut(s) 130, 562, 899, 1022, 1321
Hpy166II GTNNAC 6 cut(s) 138, 614, 981, 1008, 1017, 1030
Hpy188I TCNGA 8 cut(s) 46, 129, 246, 285, 301, 498, 825, 1109
Hpy188III TCNNGA 4 cut(s) 262, 354, 925, 933
Hpy8I GTNNAC 6 cut(s) 138, 614, 981, 1008, 1017, 1030
Hpy99I CGWCG 1 cut(s) 1109
HpyAV CCTTC 4 cut(s) 235, 259, 473, 703
HpyCH4III ACNGT 8 cut(s) 142, 371, 1014, 1021, 1027, 1072, 1105, 1153
HpyCH4IV ACGT 6 cut(s) 124, 509, 1205, 1247, 1313, 1326
HpyCH4V TGCA 4 cut(s) 449, 641, 868, 1254
HpyF10VI GCNNNNNNNGC 4 cut(s) 1263, 1296, 1356, 1361
HpyF3I CTNAG 5 cut(s) 300, 310, 332, 352, 824
HpySE526I ACGT 6 cut(s) 124, 509, 1205, 1247, 1313, 1326
Hsp92I GRCGYC 2 cut(s) 1205, 1313
Hsp92II CATG 8 cut(s) 22, 82, 115, 505, 833, 977, 1038, 1337
HspAI GCGC 2 cut(s) 1297, 1342
Kzo9I GATC 5 cut(s) 162, 820, 1060, 1109, 1141
Lsp1109I GCAGC 4 cut(s) 708, 1238, 1266, 1326
LweI GCATC 4 cut(s) 283, 650, 726, 877
MaeI CTAG 2 cut(s) 1223, 1372
MaeII ACGT 6 cut(s) 124, 509, 1205, 1247, 1313, 1326
MaeIII GTNAC 6 cut(s) 505, 905, 951, 1021, 1318, 1327
MalI GATC 5 cut(s) 164, 822, 1062, 1111, 1143
MboI GATC 5 cut(s) 162, 820, 1060, 1109, 1141
MboII GAAGA 4 cut(s) 75, 334, 611, 1268
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 3 cut(s) 162, 820, 1109
MluCI AATT 9 cut(s) 486, 538, 648, 936, 1041, 1082, 1093, 1122, 1163
MluI ACGCGT 1 cut(s) 1193
MlyI GAGTC 3 cut(s) 298, 689, 748
MmeI TCCRAC 3 cut(s) 269, 1087, 1201
MroXI GAANNNNTTC 2 cut(s) 134, 290
MseI TTAA 8 cut(s) 420, 441, 516, 546, 812, 1040, 1092, 1121
MslI CAYNNNNRTG 1 cut(s) 1334
MspI CCGG 3 cut(s) 104, 987, 1003
MspR9I CCNGG 2 cut(s) 987, 1003
MunI CAATTG 1 cut(s) 648
MvnI CGCG 4 cut(s) 667, 1195, 1286, 1299
MwoI GCNNNNNNNGC 4 cut(s) 1263, 1296, 1356, 1361
NciI CCSGG 2 cut(s) 987, 1003
NcoI CCATGG 2 cut(s) 111, 829
NdeII GATC 5 cut(s) 162, 820, 1060, 1109, 1141
NlaIII CATG 8 cut(s) 22, 82, 115, 505, 833, 977, 1038, 1337
NlaIV GGNNCC 3 cut(s) 164, 635, 1111
NmeAIII GCCGAG 2 cut(s) 295, 410
NmuCI GTSAC 4 cut(s) 905, 1021, 1318, 1327
OliI CACNNNNGTG 1 cut(s) 1334
PdmI GAANNNNTTC 2 cut(s) 134, 290
PfeI GAWTC 4 cut(s) 116, 357, 662, 790
PkrI GCNGC 5 cut(s) 109, 698, 1253, 1256, 1341
PleI GAGTC 3 cut(s) 298, 688, 748
PmaCI CACGTG 1 cut(s) 1248
PmlI CACGTG 1 cut(s) 1248
PpsI GAGTC 3 cut(s) 298, 688, 748
Ppu21I YACGTR 1 cut(s) 1248
PshAI GACNNNNGTC 1 cut(s) 1325
PshBI ATTAAT 1 cut(s) 1092
PspCI CACGTG 1 cut(s) 1248
PspFI CCCAGC 1 cut(s) 604
PspN4I GGNNCC 3 cut(s) 164, 635, 1111
PspPI GGNCC 7 cut(s) 883, 1055, 1068, 1136, 1149, 1270, 1348
PstI CTGCAG 1 cut(s) 1256
PsuI RGATCY 3 cut(s) 162, 820, 1109
RsaI GTAC 1 cut(s) 615
RsaNI GTAC 1 cut(s) 614
RseI CAYNNNNRTG 1 cut(s) 1334
SaqAI TTAA 8 cut(s) 420, 441, 516, 546, 812, 1040, 1092, 1121
SatI GCNGC 5 cut(s) 108, 697, 1252, 1255, 1340
Sau3AI GATC 5 cut(s) 162, 820, 1060, 1109, 1141
Sau96I GGNCC 7 cut(s) 883, 1055, 1068, 1136, 1149, 1270, 1348
SchI GAGTC 3 cut(s) 298, 689, 748
ScrFI CCNGG 2 cut(s) 987, 1003
SfaNI GCATC 4 cut(s) 283, 650, 726, 877
SfcI CTRYAG 3 cut(s) 234, 367, 1252
SinI GGWCC 4 cut(s) 883, 1068, 1149, 1270
SmiMI CAYNNNNRTG 1 cut(s) 1334
Sse9I AATT 9 cut(s) 486, 538, 648, 936, 1041, 1082, 1093, 1122, 1163
SsiI CCGC 3 cut(s) 39, 75, 108
SspMI CTAG 2 cut(s) 1223, 1372
StyD4I CCNGG 2 cut(s) 985, 1001
StyI CCWWGG 2 cut(s) 111, 829
TaaI ACNGT 8 cut(s) 142, 371, 1014, 1021, 1027, 1072, 1105, 1153
TaiI ACGT 6 cut(s) 127, 512, 1208, 1250, 1316, 1329
TaqI TCGA 2 cut(s) 924, 940
TasI AATT 9 cut(s) 486, 538, 648, 936, 1041, 1082, 1093, 1122, 1163
TatI WGTACW 1 cut(s) 613
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 4 cut(s) 116, 357, 662, 790
Tru1I TTAA 8 cut(s) 420, 441, 516, 546, 812, 1040, 1092, 1121
Tru9I TTAA 8 cut(s) 420, 441, 516, 546, 812, 1040, 1092, 1121
TscAI CASTG 8 cut(s) 32, 787, 897, 967, 973, 1017, 1030, 1323
TseFI GTSAC 4 cut(s) 905, 1021, 1318, 1327
TseI GCWGC 4 cut(s) 696, 1251, 1254, 1339
Tsp45I GTSAC 4 cut(s) 905, 1021, 1318, 1327
TspDTI ATGAA 6 cut(s) 22, 328, 349, 515, 722, 1087
TspGWI ACGGA 4 cut(s) 267, 896, 1195, 1262
TspRI CASTG 8 cut(s) 32, 787, 897, 967, 973, 1017, 1030, 1323
VpaK11BI GGWCC 4 cut(s) 883, 1068, 1149, 1270
VspI ATTAAT 1 cut(s) 1092
XapI RAATTY 4 cut(s) 538, 936, 1082, 1163
XmnI GAANNNNTTC 2 cut(s) 134, 290
XspI CTAG 2 cut(s) 1223, 1372
ZraI GACGTC 2 cut(s) 1206, 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.