FvH4_6g16270

Belongs to the phosphoglycerate kinase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
10238496 .. 10244835
6340 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16270.t4

Sequence Viewer

Length: 1506 bp
ATGGCATCAAAGAGAGAAGGCTTTGAAAAATCTGATATTGTTCTCCTTGAGAATCTTGCTGATTTTAAAGGGGAAGTTGCAAACTGTTCAAAATTTGCTCAAGTATTGTCATCCGGAGTAGATATTTTTGTCAATGACTACTTTTCCCGGTCTCATAAGATTCTTGCATCGACCTGTGGAGTTGCTCGTTTCTGTTATGCTTGTTTAGCTGGTTTTCACTTTGAGGAGAGCCTATATCACCTCAGAAGGCTTGCAGAAACCAGTACAAAACCTTATGCAGCAATTATTGGAGGCAGTAATCTCTTCAATAAAGCAGCTGCTTTGCATACCTTAGCTTCCACATGTGATGGGTTAGTGTTTGTAGGAATGATGGCATTCCAAATAATGCATGCATTACAGGTATCTGTTCCCTTGAATTTGGTGGAACAGGGAACACTTAAAGAAGCTTTAGATATAATCCAGTTTGCACACAATAGAAATGTACAGATCCTATATCCAAAAGACTTTTGGTGCAAGAATGATCATCATCCGAAGCAATTGGAGATATTTCCTGGACATGCCATTCCGGATGGTTGGGTACCTGTTGATATTGGGCCTGTATCGCTAGATGAAATAAACTCTATTCTCGCTAAATGCAAGAAAGTTACCTGGATTGGTCCAGTGAAATTTCATATGATCAGCCGCACAAAAGGAGCTTCTAAAGTGGCTCAAATGCTTAATCAACTAAGTCGAGGCGACATGAACATAACTGTCGTCGGGAATATGGCATGTGAAGCAATGGTGAAGGAATCAGATTCCATCTTTCACTTCAATATGATTGAGAATGCTTCAGTTGTATGGGAGTTTCTCAAAGGAAGAAAACTTCCGGGCATCATGGCTTTAGATATGGCCTACCCTTTTGATATTGACTGGAAGGCTGCCTATTCAGATCCAGCTCAACCTTTGGTAGTTGACATTGGAAGTGGTAATGGAATGTTTGTTTTTGGGATGGCTAAAACAAGGAAGGATTTGAATTTTCTCGGATTGGAGATTAATAAAAAGCTGGTAAAACGTTGCCTGGATTCCACTCACTGGTGTGGTATAAGAAATGGGTACTTCATTGCAACAAACGCAACTTCAACATTCCGCTCCATTGTTTCCAGTTACCCTGGAAAGCTAGTACTTGTGTCAATTCAGTGTCCAAATCCTGATTTCAACGAACCAGAACATCGATGGAGAATGCTGCAAAGGTCACTAGTTGAAGCTGTTGCTGATCTCCTTACATCTGATGGAAAGGTGTTTCTGCAATCTGATATAGAGGCTGTCTCTGTGAGAATGAAAGAACAGTTTCTGACACACAGCAAAGGCAAACTTACTATTGTGCATGAACAAAGGTATGCCACAGATAATGAAGGGTGGCTTAAGGAAAATCCATTTGGAGTTCGATCAGATTGGGAACAACATGTCTTAGACCGTGGGGACCCTATGTACAGATTAATGCTTTGTAAATCAGCCTCAAGTGAATGA

Protein Analysis

502

Amino Acids

56.11

Weight (kDa)

7.23

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 7 - 266 4.1e-46 Phosphoglycerate kinase
Methyltransf_4 PF02390 343 - 466 8.7e-09 Putative methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 577
AccB7I CCANNNNNTGG 1 cut(s) 1071
AccBSI CCGCTC 1 cut(s) 1128
AccIII TCCGGA 2 cut(s) 113, 565
AciI CCGC 2 cut(s) 682, 1126
AclI AACGTT 1 cut(s) 1051
AclWI GGATC 2 cut(s) 481, 923
AcsI RAATTY 4 cut(s) 92, 415, 665, 1012
AcuI CTGAAG 1 cut(s) 813
AfaI GTAC 6 cut(s) 265, 483, 579, 1094, 1161, 1469
AfiI CCNNNNNNNGG 1 cut(s) 1071
AflII CTTAAG 1 cut(s) 1400
AflIII ACRYGT 2 cut(s) 341, 1441
AgsI TTSAA 9 cut(s) 26, 90, 307, 415, 811, 1012, 1119, 1195, 1241
AhlI ACTAGT 1 cut(s) 1234
AjnI CCWGG 4 cut(s) 550, 647, 1056, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 1398, 1430
AleI CACNNNNGTG 1 cut(s) 1074
AluBI AGCT 9 cut(s) 209, 317, 335, 446, 695, 935, 1042, 1156, 1244
AluI AGCT 9 cut(s) 209, 317, 335, 446, 695, 935, 1042, 1156, 1244
Alw26I GTCTC 2 cut(s) 156, 1309
AlwI GGATC 2 cut(s) 481, 923
AlwNI CAGNNNCTG 1 cut(s) 1330
Aor13HI TCCGGA 2 cut(s) 113, 565
AoxI GGCC 2 cut(s) 593, 888
ApeKI GCWGC 5 cut(s) 278, 314, 317, 917, 1222
ApoI RAATTY 4 cut(s) 92, 415, 665, 1012
AseI ATTAAT 2 cut(s) 1032, 1475
Asp700I GAANNNNTTC 1 cut(s) 1326
Asp718I GGTACC 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 593, 656, 1459
AsuC2I CCSGG 2 cut(s) 148, 867
AsuHPI GGTGA 2 cut(s) 230, 793
AvaII GGWCC 2 cut(s) 656, 1459
BanI GGYRCC 1 cut(s) 577
BbvI GCAGC 5 cut(s) 290, 304, 326, 904, 1209
BccI CCATC 7 cut(s) 341, 364, 563, 806, 982, 1206, 1262
BciT130I CCWGG 4 cut(s) 552, 649, 1058, 1149
BclI TGATCA 2 cut(s) 520, 675
BcnI CCSGG 2 cut(s) 148, 867
BcoDI GTCTC 2 cut(s) 156, 1309
BcuI ACTAGT 1 cut(s) 1234
BfaI CTAG 3 cut(s) 605, 1157, 1235
BfrI CTTAAG 1 cut(s) 1400
BisI GCNGC 6 cut(s) 279, 315, 318, 682, 918, 1223
BlsI GCNGC 6 cut(s) 280, 316, 319, 683, 919, 1224
BmcAI AGTACT 1 cut(s) 1161
Bme1390I CCNGG 6 cut(s) 148, 552, 649, 867, 1058, 1149
Bme18I GGWCC 2 cut(s) 656, 1459
BmgT120I GGNCC 3 cut(s) 593, 656, 1459
BmiI GGNNCC 3 cut(s) 579, 1460, 1461
BmrFI CCNGG 6 cut(s) 148, 552, 649, 867, 1058, 1149
BmsI GCATC 3 cut(s) 14, 176, 879
BplI GAGNNNNNCTC 2 cut(s) 1289, 1321
Bpu10I CCTNAGC 1 cut(s) 331
BpuEI CTTGAG 3 cut(s) 68, 84, 1480
BpuMI CCSGG 2 cut(s) 148, 867
Bsa29I ATCGAT 1 cut(s) 1210
BsaBI GATNNNNATC 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 1147, 1453
BsaWI WCCGGW 2 cut(s) 113, 565
Bsc4I CCNNNNNNNGG 1 cut(s) 1071
Bse1I ACTGG 6 cut(s) 261, 460, 659, 914, 1076, 1140
Bse3DI GCAATG 2 cut(s) 783, 1098
Bse8I GATNNNNATC 1 cut(s) 525
BseAI TCCGGA 2 cut(s) 113, 565
BseBI CCWGG 4 cut(s) 552, 649, 1058, 1149
BseCI ATCGAT 1 cut(s) 1210
BseDI CCNNGG 2 cut(s) 1147, 1453
BseGI GGATG 4 cut(s) 110, 526, 574, 993
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 1071
BseMI GCAATG 2 cut(s) 783, 1098
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 6 cut(s) 261, 460, 659, 914, 1076, 1140
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 5 cut(s) 290, 304, 326, 904, 1209
BshFI GGCC 2 cut(s) 595, 890
BshNI GGYRCC 1 cut(s) 577
BshVI ATCGAT 1 cut(s) 1210
BsiSI CCGG 4 cut(s) 114, 148, 566, 866
BslFI GGGAC 1 cut(s) 1472
BslI CCNNNNNNNGG 1 cut(s) 1071
BsmAI GTCTC 2 cut(s) 156, 1309
BsmFI GGGAC 1 cut(s) 1472
BsmI GAATGC 3 cut(s) 374, 829, 1224
BsnI GGCC 2 cut(s) 595, 890
Bso31I GGTCTC 1 cut(s) 156
Bsp13I TCCGGA 2 cut(s) 113, 565
Bsp1407I TGTACA 2 cut(s) 481, 1467
Bsp143I GATC 6 cut(s) 486, 520, 675, 928, 1252, 1424
BspACI CCGC 2 cut(s) 682, 1126
BspANI GGCC 2 cut(s) 595, 890
BspCNI CTCAG 1 cut(s) 255
BspDI ATCGAT 1 cut(s) 1210
BspEI TCCGGA 2 cut(s) 113, 565
BspLI GGNNCC 3 cut(s) 579, 1460, 1461
BspPI GGATC 2 cut(s) 481, 923
BspT107I GGYRCC 1 cut(s) 577
BspTI CTTAAG 1 cut(s) 1400
BspTNI GGTCTC 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 1128
BsrDI GCAATG 2 cut(s) 783, 1098
BsrGI TGTACA 2 cut(s) 481, 1467
BsrI ACTGG 6 cut(s) 261, 460, 659, 914, 1076, 1140
BssECI CCNNGG 2 cut(s) 1147, 1453
BssMI GATC 6 cut(s) 486, 520, 675, 928, 1252, 1424
Bst2UI CCWGG 4 cut(s) 552, 649, 1058, 1149
Bst4CI ACNGT 4 cut(s) 86, 751, 1326, 1454
Bst6I CTCTTC 1 cut(s) 308
BstAFI CTTAAG 1 cut(s) 1400
BstAUI TGTACA 2 cut(s) 481, 1467
BstC8I GCNNGC 2 cut(s) 252, 390
BstDEI CTNAG 4 cut(s) 242, 331, 725, 1447
BstDSI CCRYGG 1 cut(s) 1453
BstF5I GGATG 4 cut(s) 110, 526, 574, 993
BstKTI GATC 6 cut(s) 489, 523, 678, 931, 1255, 1427
BstMAI GTCTC 2 cut(s) 156, 1309
BstMBI GATC 6 cut(s) 486, 520, 675, 928, 1252, 1424
BstMWI GCNNNNNNNGC 4 cut(s) 206, 601, 773, 1109
BstNI CCWGG 4 cut(s) 552, 649, 1058, 1149
BstNSI RCATGY 5 cut(s) 345, 392, 560, 771, 1445
BstSCI CCNGG 6 cut(s) 146, 550, 647, 865, 1056, 1147
BstV1I GCAGC 5 cut(s) 290, 304, 326, 904, 1209
BstX2I RGATCY 2 cut(s) 486, 928
BstYI RGATCY 2 cut(s) 486, 928
Bsu15I ATCGAT 1 cut(s) 1210
BsuRI GGCC 2 cut(s) 595, 890
BsuTUI ATCGAT 1 cut(s) 1210
BtgI CCRYGG 1 cut(s) 1453
BtsCI GGATG 4 cut(s) 110, 526, 574, 993
BtsIMutI CAGTG 3 cut(s) 666, 1069, 1181
Cac8I GCNNGC 2 cut(s) 252, 390
CaiI CAGNNNCTG 1 cut(s) 1330
Cfr13I GGNCC 3 cut(s) 593, 656, 1459
ClaI ATCGAT 1 cut(s) 1210
Csp6I GTAC 6 cut(s) 264, 482, 578, 1093, 1160, 1468
CviAII CATG 8 cut(s) 342, 389, 557, 739, 768, 874, 1364, 1442
CviQI GTAC 6 cut(s) 264, 482, 578, 1093, 1160, 1468
DdeI CTNAG 4 cut(s) 242, 331, 725, 1447
DpnI GATC 6 cut(s) 488, 522, 677, 930, 1254, 1426
DpnII GATC 6 cut(s) 486, 520, 675, 928, 1252, 1424
DraI TTTAAA 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 656, 1459
Eco57I CTGAAG 1 cut(s) 813
EcoO109I RGGNCCY 1 cut(s) 1459
EcoRII CCWGG 4 cut(s) 550, 647, 1056, 1147
EcoT22I ATGCAT 2 cut(s) 390, 394
FaeI CATG 8 cut(s) 345, 392, 560, 742, 771, 877, 1367, 1445
FalI AAGNNNNNCTT 4 cut(s) 1335, 1367, 1383, 1415
FaqI GGGAC 1 cut(s) 1472
FatI CATG 8 cut(s) 341, 388, 556, 738, 767, 873, 1363, 1441
FauNDI CATATG 1 cut(s) 672
FbaI TGATCA 2 cut(s) 520, 675
Fnu4HI GCNGC 6 cut(s) 279, 315, 318, 682, 918, 1223
FokI GGATG 4 cut(s) 97, 513, 581, 1000
Fsp4HI GCNGC 6 cut(s) 279, 315, 318, 682, 918, 1223
FspBI CTAG 3 cut(s) 605, 1157, 1235
GluI GCNGC 6 cut(s) 279, 315, 318, 682, 918, 1223
HaeIII GGCC 2 cut(s) 595, 890
HapII CCGG 4 cut(s) 114, 148, 566, 866
Hin1II CATG 8 cut(s) 345, 392, 560, 742, 771, 877, 1367, 1445
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 5 cut(s) 52, 160, 788, 794, 1061
HpaII CCGG 4 cut(s) 114, 148, 566, 866
HphI GGTGA 2 cut(s) 230, 793
Hpy166II GTNNAC 1 cut(s) 952
Hpy188III TCNNGA 4 cut(s) 114, 566, 757, 1187
Hpy8I GTNNAC 1 cut(s) 952
Hpy99I CGWCG 1 cut(s) 758
HpyAV CCTTC 6 cut(s) 11, 240, 778, 907, 997, 1385
HpyCH4III ACNGT 4 cut(s) 86, 751, 1326, 1454
HpyCH4IV ACGT 1 cut(s) 1051
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 601, 773, 1109
HpyF3I CTNAG 4 cut(s) 242, 331, 725, 1447
HpySE526I ACGT 1 cut(s) 1051
Hsp92II CATG 8 cut(s) 345, 392, 560, 742, 771, 877, 1367, 1445
KflI GGGWCCC 1 cut(s) 1459
Kpn2I TCCGGA 2 cut(s) 113, 565
KpnI GGTACC 1 cut(s) 581
Ksp22I TGATCA 2 cut(s) 520, 675
Kzo9I GATC 6 cut(s) 486, 520, 675, 928, 1252, 1424
LmnI GCTCC 2 cut(s) 692, 1133
Lsp1109I GCAGC 5 cut(s) 290, 304, 326, 904, 1209
LweI GCATC 3 cut(s) 14, 176, 879
MaeI CTAG 3 cut(s) 605, 1157, 1235
MaeII ACGT 1 cut(s) 1051
MaeIII GTNAC 3 cut(s) 643, 1142, 1230
MalI GATC 6 cut(s) 488, 522, 677, 930, 1254, 1426
MbiI CCGCTC 1 cut(s) 1128
MboI GATC 6 cut(s) 486, 520, 675, 928, 1252, 1424
MboII GAAGA 2 cut(s) 295, 867
MfeI CAATTG 1 cut(s) 536
MflI RGATCY 2 cut(s) 486, 928
MluCI AATT 7 cut(s) 92, 282, 415, 536, 665, 1012, 1170
MnlI CCTC 6 cut(s) 217, 251, 284, 725, 1291, 1504
Mph1103I ATGCAT 2 cut(s) 390, 394
MroI TCCGGA 2 cut(s) 113, 565
MroXI GAANNNNTTC 1 cut(s) 1326
MseI TTAA 6 cut(s) 66, 438, 717, 1032, 1401, 1475
MslI CAYNNNNRTG 1 cut(s) 1074
MspA1I CMGCKG 1 cut(s) 317
MspCI CTTAAG 1 cut(s) 1400
MspI CCGG 4 cut(s) 114, 148, 566, 866
MspR9I CCNGG 6 cut(s) 148, 552, 649, 867, 1058, 1149
MunI CAATTG 1 cut(s) 536
Mva1269I GAATGC 3 cut(s) 374, 829, 1224
MvaI CCWGG 4 cut(s) 552, 649, 1058, 1149
MwoI GCNNNNNNNGC 4 cut(s) 206, 601, 773, 1109
NciI CCSGG 2 cut(s) 148, 867
NdeI CATATG 1 cut(s) 672
NdeII GATC 6 cut(s) 486, 520, 675, 928, 1252, 1424
NlaIII CATG 8 cut(s) 345, 392, 560, 742, 771, 877, 1367, 1445
NlaIV GGNNCC 3 cut(s) 579, 1460, 1461
NmuCI GTSAC 1 cut(s) 1230
NsiI ATGCAT 2 cut(s) 390, 394
NspI RCATGY 5 cut(s) 345, 392, 560, 771, 1445
OliI CACNNNNGTG 1 cut(s) 1074
PaeI GCATGC 1 cut(s) 392
PciI ACATGT 2 cut(s) 341, 1441
PctI GAATGC 3 cut(s) 374, 829, 1224
PdmI GAANNNNTTC 1 cut(s) 1326
PfeI GAWTC 5 cut(s) 52, 160, 788, 794, 1061
PflMI CCANNNNNTGG 1 cut(s) 1071
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 6 cut(s) 280, 316, 319, 683, 919, 1224
PpuMI RGGWCCY 1 cut(s) 1459
PscI ACATGT 2 cut(s) 341, 1441
PshBI ATTAAT 2 cut(s) 1032, 1475
Psp1406I AACGTT 1 cut(s) 1051
Psp5II RGGWCCY 1 cut(s) 1459
Psp6I CCWGG 4 cut(s) 550, 647, 1056, 1147
PspGI CCWGG 4 cut(s) 550, 647, 1056, 1147
PspN4I GGNNCC 3 cut(s) 579, 1460, 1461
PspPI GGNCC 3 cut(s) 593, 656, 1459
PspPPI RGGWCCY 1 cut(s) 1459
PstNI CAGNNNCTG 1 cut(s) 1330
PsuI RGATCY 2 cut(s) 486, 928
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 6 cut(s) 265, 483, 579, 1094, 1161, 1469
RsaNI GTAC 6 cut(s) 264, 482, 578, 1093, 1160, 1468
RseI CAYNNNNRTG 1 cut(s) 1074
SaqAI TTAA 6 cut(s) 66, 438, 717, 1032, 1401, 1475
SatI GCNGC 6 cut(s) 279, 315, 318, 682, 918, 1223
Sau3AI GATC 6 cut(s) 486, 520, 675, 928, 1252, 1424
Sau96I GGNCC 3 cut(s) 593, 656, 1459
ScaI AGTACT 1 cut(s) 1161
ScrFI CCNGG 6 cut(s) 148, 552, 649, 867, 1058, 1149
SfaNI GCATC 3 cut(s) 14, 176, 879
SinI GGWCC 2 cut(s) 656, 1459
SmiMI CAYNNNNRTG 1 cut(s) 1074
SmlI CTYRAG 4 cut(s) 47, 99, 1400, 1495
SmoI CTYRAG 4 cut(s) 47, 99, 1400, 1495
SpeI ACTAGT 1 cut(s) 1234
SphI GCATGC 1 cut(s) 392
Sse9I AATT 7 cut(s) 92, 282, 415, 536, 665, 1012, 1170
SsiI CCGC 2 cut(s) 682, 1126
SspMI CTAG 3 cut(s) 605, 1157, 1235
StyD4I CCNGG 6 cut(s) 146, 550, 647, 865, 1056, 1147
TaaI ACNGT 4 cut(s) 86, 751, 1326, 1454
TaiI ACGT 1 cut(s) 1054
TaqI TCGA 4 cut(s) 170, 730, 1210, 1423
TasI AATT 7 cut(s) 92, 282, 415, 536, 665, 1012, 1170
TatI WGTACW 4 cut(s) 263, 481, 1159, 1467
TauI GCSGC 1 cut(s) 684
TfiI GAWTC 5 cut(s) 52, 160, 788, 794, 1061
Tru1I TTAA 6 cut(s) 66, 438, 717, 1032, 1401, 1475
Tru9I TTAA 6 cut(s) 66, 438, 717, 1032, 1401, 1475
TscAI CASTG 3 cut(s) 666, 1076, 1181
TseFI GTSAC 1 cut(s) 1230
TseI GCWGC 5 cut(s) 278, 314, 317, 917, 1222
Tsp45I GTSAC 1 cut(s) 1230
TspDTI ATGAA 7 cut(s) 624, 659, 755, 1087, 1331, 1380, 1404
TspRI CASTG 3 cut(s) 666, 1076, 1181
Van91I CCANNNNNTGG 1 cut(s) 1071
Vha464I CTTAAG 1 cut(s) 1400
VpaK11BI GGWCC 2 cut(s) 656, 1459
VspI ATTAAT 2 cut(s) 1032, 1475
XapI RAATTY 4 cut(s) 92, 415, 665, 1012
XceI RCATGY 5 cut(s) 345, 392, 560, 771, 1445
XcmI CCANNNNNNNNNTGG 2 cut(s) 504, 1209
XmnI GAANNNNTTC 1 cut(s) 1326
XspI CTAG 3 cut(s) 605, 1157, 1235
ZrmI AGTACT 1 cut(s) 1161
Zsp2I ATGCAT 2 cut(s) 390, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.