Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010579

Physical Location & Seq

Genomic Coordinates Forward (+)

33685431 .. 33691151

Gene Structure 5721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGCGAGTCCTCTACAACTTCTCACTCAGCTTTTGCTCTGTTGAAGAAGTGCGTTTGCGTTATCTATGGGCCGCCCTTCAAAACGACATGACGTTTTATTTTTACACTATATGTCGTTTCTCTCGTCATCTTCCCTGCTTAAAACCTCGGCCAGATAATACCAGAAAAAACCAGTTGGGTTTAAGAGCTCTGCTGGGCTCTCATACTTTGCTTTACATGGGTCTACTTGTGAATCTTCTTAACCTTCCTGCATTTTCATCCATTGCTTATAAACCTCACAGTGTTGAATATCCCAAAGTAAATGTAACATTTAAATGTAAGGCCTATGGAGGAGAATTGGATGCTTTACCTCACTTGCAAACTCTTAGAAAATTTCCAAGGGAGGAGCTTGTTGAAAAAGTTGTCCTGGTCAGATTTGACTCTACCCTTTTGCTTCAGGAACAAGAAAAAGAACAAAAATTTCAATCCAATGCTGTTTTTACCATTAAGTATTTACACCAGTCCGGGGCTAAAGTAGTTCTTGTTAGTAACTGGAGTGCTGAAACTAATCCTGAAGTGTTTGCTGCAGAGTCTGTTGCAGGTTTCTTGTCATCAATTCTTGACTACAAAGTTGTTCCGGTACAATGCATTTCTCATAACACGGTATCAAAGACAGAAGGCTTTGAAAAAGCAGATATTCTTCTCCTTGAGAATCTTTCTGATTTTAGAGGGGAAGTTGCCAATTGTTCAAAATTTGCTCAAGTTTTGTCATCGGGAGTTGATATCTTTGTTAATGACTACTTTTCCCGGTCTCATAAGATTCTTGCATCGACCTGTGGAGTTGCTCGTTTCTGTTATGCTTGTTTAGCTGGTTTTCACTTTGAGGAGTGCCTATATCGCCTCAGAAGGCTCGCAGAAACCAGTACAAAACCTTATGTAGCAATTATTGGAGGCGGTAATCTTTCTAATAAAGCCGCTGCTGTGCATACCTTAGCTTCTATATGTGATGGGTTAGTGTTTGTTGGAATGATGTCATTCCAAATAATGCATGCATTAGGGCTATCTGTTCCCATGAATTTGGTGGAACATGGAGCACTTAAAGAAGCTTTAGATATAGTCCAGTTTGCACACAATAGAAATGTACAAATCCTATATCCAAAAGACTTTTGGTGCAAGAACGATCATCATCCGAAGCAATTGGAAATATATCCTGCACGTGCTATTCCAGATGGGTGGGTACCTGTTGATATTGGGCCTGTATCGTTGGATGGAATAAACTCCATTCTCACTAAATGCAAGAAAGTTACCTGGATTGGTCCAGTGAAATTTCATACGAACAGCGGCACAAAAGGAGCTTCTAAAGTGGCGCAATTGCTTAATCAACTAAGTCGAGGCAACAGCAACATAACTGTCATTGGCAATATAGCATGTCAAGCAATGGTGAAAGAATCAAATTCCATCTTTCACTTCAATATGTTAGAGAATGCTTCAGTTGTATGGGAGTTTCTCAAAGGAAGAAAACTTCCAGGCATCATGGCTTTAGATAGAGCATTCCCTTTTGATATTGACTGGAAGGCAGCCTTTTCAGATCCTGCTCAACCTTTGGTAGTTGATATTGGCAGTGGTAATGGAATGTTTCTTTTCGGGATGGCTAAAACAAGGAAGGATTTGAATTTTCTCGGTTTGGAGATTAATAAAAAGCTGGTAAAACGTTGCCTGGATTCCAGTCATCGTTGTGGTATAAGAAATGGGTACTTCATCGCAACAAATGCAACATCAACATTCCGCTCCATAGTTTCTAGTTACCCCGGAAAGCTAGTACTTGTGTCAATACAGTGTCCAAATCCTGATTTCAACGAACCAGAACATCGATGGAGAATGCTGCAAAGGTCATTAGTCGAAGCAGTTGCTGATCTCCTTACAGTTGATGGAAAGTCTGATATAGAGGTTGTCTCTGTGAGAATGAAGGAACAGTTTCTGAGATATGGCAAGGGCAAACTTACTCTTGTGCATGAGCAAAGTTATGCCATAAATAATGAAGGGTGGCTCAAGGACAATCCATTCGGAGTTCGGTCAGATTGGGAACAACACGTCTTAGATCGTGGGGCCCCTATGGTCCTTTCTTGGTGGCATCGATTTGTTTGTCCAGCAATGCTGTCTTTTAATGGTAATGGATGGCTCAAGAGCTTTCAAAGTAAGAGAAATGATGGTGGGATGGAATGGAAGGTGTTGGTGAAGCAGATGCTGTTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019253 GO:0019538 GO:0019685 GO:0030312 GO:0031967 GO:0031975 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Methyltransf_4 PGK

Protein Analysis

744

Amino Acids

83.8

Weight (kDa)

9.03

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGK	PF00162	130 - 478	9e-57	Phosphoglycerate kinase
Methyltransf_4	PF02390	526 - 653	6.5e-20	Putative methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g16270 FvH4_6g16270 FvH4_6g16270
malus_domestica	MD04G1094300.v1.1
prunus_persica	Prupe.6G232800_v2.0.a1 Prupe.6G232800_v2.0.a1 Prupe.6G232800_v2.0.a1 Prupe.6G232800_v2.0.a1 Prupe.6G232800_v2.0.a1
pyrus_communis	pycom04g08930
rosa_chinensis	RchiOBHm_Chr3g0470131
rosa_laevigata	RLG00000024294
rosa_roxburghii	Rroxscaffold_6G00411150
rosa_rugosa	Rorug03G0107200 Rorug03G0107300 Rorug03G0107400
rosa_samantha	Rh3BG180400 Rh3CG171200 Rh3DG194600
rosa_wichuraiana	Rw3G014720 Rw3G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	569
Acc65I	GGTACC	1 cut(s)	1216
AccB1I	GGYRCC	1 cut(s)	1216
AccBSI	CCGCTC	1 cut(s)	1767
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	5 cut(s)	72, 933, 954, 1320, 1765
AclI	AACGTT	1 cut(s)	1690
AclWI	GGATC	1 cut(s)	1562
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	7 cut(s)	371, 458, 731, 1054, 1304, 1432, 1651
AcuI	CTGAAG	3 cut(s)	419, 573, 1452
AcvI	CACGTG	1 cut(s)	1196
AfaI	GTAC	6 cut(s)	621, 904, 1122, 1218, 1733, 1800
AfiI	CCNNNNNNNGG	1 cut(s)	505
AflIII	ACRYGT	1 cut(s)	2068
AjiI	CACGTC	1 cut(s)	2071
AjnI	CCWGG	4 cut(s)	405, 1286, 1504, 1695
Alw21I	GWGCWC	2 cut(s)	190, 1075
Alw26I	GTCTC	2 cut(s)	795, 1936
AlwI	GGATC	1 cut(s)	1562
AlwNI	CAGNNNCTG	5 cut(s)	572, 1571, 1889, 1957, 2224
AoxI	GGCC	5 cut(s)	69, 149, 321, 1232, 2085
ApaI	GGGCCC	1 cut(s)	2089
ApeKI	GCWGC	4 cut(s)	563, 956, 1556, 1861
ApoI	RAATTY	7 cut(s)	371, 458, 731, 1054, 1304, 1432, 1651
ArsI	GACNNNNNNTTYG	2 cut(s)	2024, 2056
AseI	ATTAAT	1 cut(s)	1671
Asp700I	GAANNNNTTC	1 cut(s)	1953
Asp718I	GGTACC	1 cut(s)	1216
AspLEI	GCGC	1 cut(s)	1348
AspS9I	GGNCC	6 cut(s)	69, 1232, 1295, 2085, 2086, 2095
AsuC2I	CCSGG	3 cut(s)	505, 787, 1788
AsuHPI	GGTGA	2 cut(s)	1432, 2224
AvaII	GGWCC	2 cut(s)	1295, 2095
BaeGI	GKGCMC	1 cut(s)	2089
BanI	GGYRCC	1 cut(s)	1216
BanII	GRGCYC	3 cut(s)	190, 200, 2089
BbrPI	CACGTG	1 cut(s)	1196
Bbv12I	GWGCWC	2 cut(s)	190, 1075
BbvI	GCAGC	4 cut(s)	550, 943, 1568, 1848
BcgI	CGANNNNNNTGC	2 cut(s)	1868, 1902
BciT130I	CCWGG	4 cut(s)	407, 1288, 1506, 1697
BcnI	CCSGG	3 cut(s)	505, 787, 1788
BcoDI	GTCTC	2 cut(s)	795, 1936
BfaI	CTAG	2 cut(s)	1779, 1796
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	569
BisI	GCNGC	7 cut(s)	72, 564, 954, 957, 1321, 1557, 1862
BlsI	GCNGC	7 cut(s)	73, 565, 955, 958, 1322, 1558, 1863
BmcAI	AGTACT	1 cut(s)	1800
Bme1390I	CCNGG	7 cut(s)	407, 505, 787, 1288, 1506, 1697, 1788
Bme18I	GGWCC	2 cut(s)	1295, 2095
BmgBI	CACGTC	1 cut(s)	2071
BmgT120I	GGNCC	6 cut(s)	69, 1232, 1295, 2085, 2086, 2095
BmiI	GGNNCC	4 cut(s)	1218, 2086, 2087, 2088
BmrFI	CCNGG	7 cut(s)	407, 505, 787, 1288, 1506, 1697, 1788
BmsI	GCATC	5 cut(s)	331, 815, 1518, 2119, 2211
BplI	GAGNNNNNCTC	2 cut(s)	1916, 1948
BpmI	CTGGAG	1 cut(s)	553
Bpu10I	CCTNAGC	1 cut(s)	970
BpuEI	CTTGAG	4 cut(s)	707, 723, 2012, 2144
BpuMI	CCSGG	3 cut(s)	505, 787, 1788
Bsa29I	ATCGAT	2 cut(s)	1849, 2113
BsaAI	YACGTR	1 cut(s)	1196
BsaBI	GATNNNNATC	1 cut(s)	1164
BsaI	GGTCTC	1 cut(s)	795
BsaJI	CCNNGG	4 cut(s)	146, 377, 504, 1786
BsaWI	WCCGGW	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	8 cut(s)	172, 499, 536, 900, 1099, 1298, 1553, 1704
Bse3DI	GCAATG	3 cut(s)	261, 1422, 2136
Bse8I	GATNNNNATC	1 cut(s)	1164
BseBI	CCWGG	4 cut(s)	407, 1288, 1506, 1697
BseCI	ATCGAT	2 cut(s)	1849, 2113
BseDI	CCNNGG	4 cut(s)	146, 377, 504, 1786
BseGI	GGATG	7 cut(s)	257, 346, 1165, 1252, 1632, 2159, 2199
BseJI	GATNNNNATC	1 cut(s)	1164
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMI	GCAATG	3 cut(s)	261, 1422, 2136
BseMII	CTCAG	3 cut(s)	40, 895, 1949
BseNI	ACTGG	8 cut(s)	172, 499, 536, 900, 1099, 1298, 1553, 1704
BseRI	GAGGAG	3 cut(s)	345, 398, 878
BseSI	GKGCMC	1 cut(s)	2089
BseXI	GCAGC	4 cut(s)	550, 943, 1568, 1848
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	1176
BshFI	GGCC	5 cut(s)	71, 151, 323, 1234, 2087
BshNI	GGYRCC	1 cut(s)	1216
BshVI	ATCGAT	2 cut(s)	1849, 2113
BsiHKAI	GWGCWC	2 cut(s)	190, 1075
BsiSI	CCGG	4 cut(s)	504, 617, 787, 1788
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	2 cut(s)	795, 1936
BsmI	GAATGC	3 cut(s)	1468, 1529, 1863
BsnI	GGCC	5 cut(s)	71, 151, 323, 1234, 2087
Bso31I	GGTCTC	1 cut(s)	795
Bsp120I	GGGCCC	1 cut(s)	2085
Bsp1286I	GDGCHC	4 cut(s)	190, 200, 1075, 2089
Bsp1407I	TGTACA	1 cut(s)	1120
Bsp143I	GATC	4 cut(s)	1159, 1567, 1891, 2077
BspACI	CCGC	5 cut(s)	72, 933, 954, 1320, 1765
BspANI	GGCC	5 cut(s)	71, 151, 323, 1234, 2087
BspCNI	CTCAG	3 cut(s)	39, 894, 1950
BspDI	ATCGAT	2 cut(s)	1849, 2113
BspLI	GGNNCC	4 cut(s)	1218, 2086, 2087, 2088
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	1562
BspT107I	GGYRCC	1 cut(s)	1216
BspTNI	GGTCTC	1 cut(s)	795
BsrBI	CCGCTC	1 cut(s)	1767
BsrDI	GCAATG	3 cut(s)	261, 1422, 2136
BsrGI	TGTACA	1 cut(s)	1120
BsrI	ACTGG	8 cut(s)	172, 499, 536, 900, 1099, 1298, 1553, 1704
BssECI	CCNNGG	4 cut(s)	146, 377, 504, 1786
BssMI	GATC	4 cut(s)	1159, 1567, 1891, 2077
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	4 cut(s)	407, 1288, 1506, 1697
Bst4CI	ACNGT	6 cut(s)	281, 643, 1390, 1815, 1903, 1953
BstAPI	GCANNNNNTGC	1 cut(s)	1748
BstAUI	TGTACA	1 cut(s)	1120
BstBAI	YACGTR	1 cut(s)	1196
BstC8I	GCNNGC	2 cut(s)	891, 1029
BstDEI	CTNAG	7 cut(s)	26, 365, 881, 970, 1364, 1958, 2074
BstF5I	GGATG	7 cut(s)	257, 346, 1165, 1252, 1632, 2159, 2199
BstHHI	GCGC	1 cut(s)	1348
BstKTI	GATC	4 cut(s)	1162, 1570, 1894, 2080
BstMAI	GTCTC	2 cut(s)	795, 1936
BstMBI	GATC	4 cut(s)	1159, 1567, 1891, 2077
BstMWI	GCNNNNNNNGC	4 cut(s)	845, 876, 1412, 1748
BstNI	CCWGG	4 cut(s)	407, 1288, 1506, 1697
BstNSI	RCATGY	2 cut(s)	1031, 1410
BstSCI	CCNGG	7 cut(s)	405, 503, 785, 1286, 1504, 1695, 1786
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	2089
BstV1I	GCAGC	4 cut(s)	550, 943, 1568, 1848
BstX2I	RGATCY	1 cut(s)	1567
BstXI	CCANNNNNNTGG	2 cut(s)	1057, 1212
BstYI	RGATCY	1 cut(s)	1567
Bsu15I	ATCGAT	2 cut(s)	1849, 2113
BsuRI	GGCC	5 cut(s)	71, 151, 323, 1234, 2087
BsuTUI	ATCGAT	2 cut(s)	1849, 2113
BtgZI	GCGATG	1 cut(s)	1723
BtrI	CACGTC	1 cut(s)	2071
BtsCI	GGATG	7 cut(s)	257, 346, 1165, 1252, 1632, 2159, 2199
BtsI	GCAGTG	1 cut(s)	1606
BtsIMutI	CAGTG	4 cut(s)	286, 1305, 1606, 1820
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	2 cut(s)	891, 1029
CaiI	CAGNNNCTG	5 cut(s)	572, 1571, 1889, 1957, 2224
CfoI	GCGC	1 cut(s)	1348
Cfr13I	GGNCC	6 cut(s)	69, 1232, 1295, 2085, 2086, 2095
ClaI	ATCGAT	2 cut(s)	1849, 2113
Csp6I	GTAC	6 cut(s)	620, 903, 1121, 1217, 1732, 1799
CviAII	CATG	8 cut(s)	88, 217, 1028, 1051, 1067, 1407, 1513, 1991
CviQI	GTAC	6 cut(s)	620, 903, 1121, 1217, 1732, 1799
DdeI	CTNAG	7 cut(s)	26, 365, 881, 970, 1364, 1958, 2074
DpnI	GATC	4 cut(s)	1161, 1569, 1893, 2079
DpnII	GATC	4 cut(s)	1159, 1567, 1891, 2077
DraI	TTTAAA	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	377
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	3 cut(s)	190, 200, 2089
Eco31I	GGTCTC	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	763
Eco47I	GGWCC	2 cut(s)	1295, 2095
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	3 cut(s)	419, 573, 1452
Eco72I	CACGTG	1 cut(s)	1196
EcoICRI	GAGCTC	1 cut(s)	188
EcoO109I	RGGNCCY	2 cut(s)	2085, 2086
EcoRII	CCWGG	4 cut(s)	405, 1286, 1504, 1695
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	1 cut(s)	377
EcoT22I	ATGCAT	3 cut(s)	629, 1029, 1033
EcoT38I	GRGCYC	3 cut(s)	190, 200, 2089
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	8 cut(s)	91, 220, 1031, 1054, 1070, 1410, 1516, 1994
FalI	AAGNNNNNCTT	4 cut(s)	504, 536, 1544, 1576
FatI	CATG	8 cut(s)	87, 216, 1027, 1050, 1066, 1406, 1512, 1990
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	7 cut(s)	72, 564, 954, 957, 1321, 1557, 1862
FokI	GGATG	7 cut(s)	244, 353, 1152, 1259, 1639, 2166, 2206
FriOI	GRGCYC	3 cut(s)	190, 200, 2089
Fsp4HI	GCNGC	7 cut(s)	72, 564, 954, 957, 1321, 1557, 1862
FspBI	CTAG	2 cut(s)	1779, 1796
GlaI	GCGC	1 cut(s)	1347
GluI	GCNGC	7 cut(s)	72, 564, 954, 957, 1321, 1557, 1862
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	553
HaeIII	GGCC	5 cut(s)	71, 151, 323, 1234, 2087
HapII	CCGG	4 cut(s)	504, 617, 787, 1788
HhaI	GCGC	1 cut(s)	1348
Hin1II	CATG	8 cut(s)	91, 220, 1031, 1054, 1070, 1410, 1516, 1994
Hin6I	GCGC	1 cut(s)	1346
HinP1I	GCGC	1 cut(s)	1346
HindIII	AAGCTT	1 cut(s)	1083
HinfI	GANTC	8 cut(s)	6, 232, 419, 569, 691, 799, 1427, 1700
HpaII	CCGG	4 cut(s)	504, 617, 787, 1788
HphI	GGTGA	2 cut(s)	1432, 2224
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	9 cut(s)	413, 700, 884, 1170, 1567, 1918, 1959, 2045, 2056
Hpy188III	TCNNGA	8 cut(s)	437, 551, 599, 753, 1205, 1624, 1826, 2161
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	9 cut(s)	86, 254, 650, 879, 1546, 1636, 1939, 2012, 2197
HpyCH4III	ACNGT	6 cut(s)	281, 643, 1390, 1815, 1903, 1953
HpyCH4IV	ACGT	4 cut(s)	92, 1195, 1690, 2070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	845, 876, 1412, 1748
HpyF3I	CTNAG	7 cut(s)	26, 365, 881, 970, 1364, 1958, 2074
HpySE526I	ACGT	4 cut(s)	92, 1195, 1690, 2070
Hsp92II	CATG	8 cut(s)	91, 220, 1031, 1054, 1070, 1410, 1516, 1994
HspAI	GCGC	1 cut(s)	1346
KpnI	GGTACC	1 cut(s)	1220
Kzo9I	GATC	4 cut(s)	1159, 1567, 1891, 2077
LmnI	GCTCC	4 cut(s)	385, 1070, 1331, 1772
Lsp1109I	GCAGC	4 cut(s)	550, 943, 1568, 1848
LweI	GCATC	5 cut(s)	331, 815, 1518, 2119, 2211
MaeI	CTAG	2 cut(s)	1779, 1796
MaeII	ACGT	4 cut(s)	92, 1195, 1690, 2070
MaeIII	GTNAC	4 cut(s)	304, 527, 1282, 1781
MalI	GATC	4 cut(s)	1161, 1569, 1893, 2079
MbiI	CCGCTC	1 cut(s)	1767
MboI	GATC	4 cut(s)	1159, 1567, 1891, 2077
MboII	GAAGA	5 cut(s)	56, 122, 227, 671, 1506
MfeI	CAATTG	3 cut(s)	721, 1175, 1349
MflI	RGATCY	1 cut(s)	1567
MhlI	GDGCHC	4 cut(s)	190, 200, 1075, 2089
MlyI	GAGTC	3 cut(s)	15, 413, 578
MmeI	TCCRAC	2 cut(s)	982, 1224
Mph1103I	ATGCAT	3 cut(s)	629, 1029, 1033
MroXI	GAANNNNTTC	1 cut(s)	1953
MslI	CAYNNNNRTG	2 cut(s)	313, 1713
MspA1I	CMGCKG	2 cut(s)	956, 1320
MspI	CCGG	4 cut(s)	504, 617, 787, 1788
MspR9I	CCNGG	7 cut(s)	407, 505, 787, 1288, 1506, 1697, 1788
MunI	CAATTG	3 cut(s)	721, 1175, 1349
Mva1269I	GAATGC	3 cut(s)	1468, 1529, 1863
MvaI	CCWGG	4 cut(s)	407, 1288, 1506, 1697
MwoI	GCNNNNNNNGC	4 cut(s)	845, 876, 1412, 1748
NciI	CCSGG	3 cut(s)	505, 787, 1788
NdeII	GATC	4 cut(s)	1159, 1567, 1891, 2077
NlaIII	CATG	8 cut(s)	91, 220, 1031, 1054, 1070, 1410, 1516, 1994
NlaIV	GGNNCC	4 cut(s)	1218, 2086, 2087, 2088
NmeAIII	GCCGAG	1 cut(s)	127
NsiI	ATGCAT	3 cut(s)	629, 1029, 1033
NspI	RCATGY	2 cut(s)	1031, 1410
PaeI	GCATGC	1 cut(s)	1031
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PctI	GAATGC	3 cut(s)	1468, 1529, 1863
PdmI	GAANNNNTTC	1 cut(s)	1953
PfeI	GAWTC	5 cut(s)	232, 691, 799, 1427, 1700
PkrI	GCNGC	7 cut(s)	73, 565, 955, 958, 1322, 1558, 1863
PleI	GAGTC	3 cut(s)	14, 413, 577
PmaCI	CACGTG	1 cut(s)	1196
PmlI	CACGTG	1 cut(s)	1196
PpsI	GAGTC	3 cut(s)	14, 413, 577
Ppu21I	YACGTR	1 cut(s)	1196
PshBI	ATTAAT	1 cut(s)	1671
PsiI	TTATAA	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	190
Psp1406I	AACGTT	1 cut(s)	1690
Psp6I	CCWGG	4 cut(s)	405, 1286, 1504, 1695
PspCI	CACGTG	1 cut(s)	1196
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	4 cut(s)	405, 1286, 1504, 1695
PspN4I	GGNNCC	4 cut(s)	1218, 2086, 2087, 2088
PspOMI	GGGCCC	1 cut(s)	2085
PspPI	GGNCC	6 cut(s)	69, 1232, 1295, 2085, 2086, 2095
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	5 cut(s)	572, 1571, 1889, 1957, 2224
PsuI	RGATCY	1 cut(s)	1567
RsaI	GTAC	6 cut(s)	621, 904, 1122, 1218, 1733, 1800
RsaNI	GTAC	6 cut(s)	620, 903, 1121, 1217, 1732, 1799
RseI	CAYNNNNRTG	2 cut(s)	313, 1713
SacI	GAGCTC	1 cut(s)	190
SatI	GCNGC	7 cut(s)	72, 564, 954, 957, 1321, 1557, 1862
Sau3AI	GATC	4 cut(s)	1159, 1567, 1891, 2077
Sau96I	GGNCC	6 cut(s)	69, 1232, 1295, 2085, 2086, 2095
ScaI	AGTACT	1 cut(s)	1800
SchI	GAGTC	3 cut(s)	15, 413, 578
ScrFI	CCNGG	7 cut(s)	407, 505, 787, 1288, 1506, 1697, 1788
SduI	GDGCHC	4 cut(s)	190, 200, 1075, 2089
SfaNI	GCATC	5 cut(s)	331, 815, 1518, 2119, 2211
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	2 cut(s)	1295, 2095
SmiI	ATTTAAAT	1 cut(s)	313
SmiMI	CAYNNNNRTG	2 cut(s)	313, 1713
SmlI	CTYRAG	4 cut(s)	686, 738, 2027, 2159
SmoI	CTYRAG	4 cut(s)	686, 738, 2027, 2159
SphI	GCATGC	1 cut(s)	1031
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	5 cut(s)	72, 933, 954, 1320, 1765
SspMI	CTAG	2 cut(s)	1779, 1796
SstI	GAGCTC	1 cut(s)	190
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	7 cut(s)	405, 503, 785, 1286, 1504, 1695, 1786
StyI	CCWWGG	1 cut(s)	377
SwaI	ATTTAAAT	1 cut(s)	313
TaaI	ACNGT	6 cut(s)	281, 643, 1390, 1815, 1903, 1953
TaiI	ACGT	4 cut(s)	95, 1198, 1693, 2073
TaqI	TCGA	5 cut(s)	809, 1369, 1849, 1878, 2113
TaqII	GACCGA	1 cut(s)	2040
TatI	WGTACW	3 cut(s)	902, 1120, 1798
TauI	GCSGC	3 cut(s)	74, 956, 1323
TfiI	GAWTC	5 cut(s)	232, 691, 799, 1427, 1700
TscAI	CASTG	4 cut(s)	286, 1305, 1606, 1820
TseI	GCWGC	4 cut(s)	563, 956, 1556, 1861
TspDTI	ATGAA	6 cut(s)	246, 1067, 1298, 1726, 1958, 2031
TspRI	CASTG	4 cut(s)	286, 1305, 1606, 1820
VpaK11BI	GGWCC	2 cut(s)	1295, 2095
VspI	ATTAAT	1 cut(s)	1671
XapI	RAATTY	7 cut(s)	371, 458, 731, 1054, 1304, 1432, 1651
XceI	RCATGY	2 cut(s)	1031, 1410
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1057, 1143, 1848
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	1953
XspI	CTAG	2 cut(s)	1779, 1796
ZrmI	AGTACT	1 cut(s)	1800
Zsp2I	ATGCAT	3 cut(s)	629, 1029, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.