FvH4_6g17950

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014762
Physical Location & Seq
Forward (+)
11782423 .. 11783809
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17950.t1

Sequence Viewer

Length: 969 bp
ATGAGGAGTATAGCTACTTGTTACAATGAACATGCTATTAAGGTATCCGATTCATATTGTTCAGGTCCTTCAAGCAGAGCCTATGTAACCCCAAAGCTGACTCCTTCAGTCCCAAAGGAAGTTACATGCATATACAAAGCCAAGCTCTTGAACCATAAGCAGCTTCTCATCACTCTTACTTGGTACAACAGAATTCTAGGCCATGGACTCGTTGTCAATGTAGATGAGTACAAAACGAATTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCATCCTCATCTTGGGAGGAATCAAAATCATCGTCGAGTTCGAGTTCCCAGAGACTGCAGAAGGAAAAGGGTAGCAGGACGTTCCAATCCTGCAATTTAAAGATAGAAGTGTTTTGGGATTTCTCCACTGCTGATTATGACAATGGAGGACCAGAGCCAGCAAGTGGTTTCTATGTATTGGTCATGGCAGACTCAGAGCTTGGTCTAATCATCGGTGACAAAATTGAAGAAGTGCTGGACTTGAAGAAGTACAAGACTCTCATATCACAGCAGAAATTCTCATTGGTCTCCAGGAGTGAGCATGTCTCTGGTAATGCTGTGTATTCAACCAAGGCTCAATTCTGCGACTCAGGAATAGCTCATGACATTCTGATCAAGTGTGACAGAGACGACGAAGGAGGGTCCAAAGGCCCGGTGCTAACGGTTTCGATTGACAAGAAGAATATTTTTCAGGTGAAGAGGTTGAAGTGGAATTTCAGAGGGAACCAGGCAATCTTTTTAGATGGTTTGCTTGTGGACTTGATGTGGGACATTCATGACTGGTTGTTCAACCCGAAATCTGGGCGTGCTGTGTTCATGTTCAGGACTAGGAGTGGATTGGATAGCAGGCTCTGGCTGGAAGAGAAGGTTCTTGAACACAAGGGACAGGACAGGCCTGAGTTTTCCTTGTTGATATGTGCCTGTAAGAACCCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

323

Amino Acids

36.17

Weight (kDa)

8.31

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 39 - 319 8.4e-82 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014762)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g17950
malus_domestica MD12G1018600.v1.1 MD14G1016600.v1.1
prunus_persica Prupe.7G116700_v2.0.a1
pyrus_communis pycom12g01540 pycom14g01420
rosa_chinensis RchiOBHm_Chr3g0472211
rosa_laevigata RLG00000024097
rosa_multiflora Rmu_sc0002532.1_g000035
rosa_roxburghii Rroxscaffold_6G00409150
rosa_rugosa Rorug03G0122800
rosa_samantha Rh3AG175200 Rh3BG200200 Rh3CG191700 Rh3CG199000 Rh3DG174200
rosa_wichuraiana Rw3G016610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AcsI RAATTY 4 cut(s) 192, 238, 545, 742
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 3 cut(s) 185, 230, 521
AfiI CCNNNNNNNGG 3 cut(s) 282, 434, 830
AgsI TTSAA 8 cut(s) 72, 151, 497, 514, 597, 736, 820, 905
AhdI GACNNNNNGTC 1 cut(s) 212
AjnI CCWGG 2 cut(s) 560, 756
AjuI GAANNNNNNNTTGG 4 cut(s) 536, 568, 593, 625
AluBI AGCT 6 cut(s) 14, 97, 145, 163, 469, 629
AluI AGCT 6 cut(s) 14, 97, 145, 163, 469, 629
Alw26I GTCTC 4 cut(s) 316, 562, 580, 651
AlwNI CAGNNNCTG 2 cut(s) 325, 882
AoxI GGCC 3 cut(s) 199, 679, 923
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 4 cut(s) 192, 238, 545, 742
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspS9I GGNCC 4 cut(s) 65, 419, 672, 680
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 497, 736
AvaII GGWCC 3 cut(s) 65, 419, 672
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 767
BciT130I CCWGG 2 cut(s) 562, 758
BciVI GTATCC 1 cut(s) 55
BclI TGATCA 1 cut(s) 642
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 4 cut(s) 316, 562, 580, 651
BfaI CTAG 2 cut(s) 197, 858
BfmI CTRYAG 1 cut(s) 326
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 3 cut(s) 562, 683, 758
Bme18I GGWCC 3 cut(s) 65, 419, 672
BmeRI GACNNNNNGTC 1 cut(s) 212
BmgT120I GGNCC 4 cut(s) 65, 419, 672, 680
BmiI GGNNCC 2 cut(s) 673, 755
BmrFI CCNGG 3 cut(s) 562, 683, 758
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BpmI CTGGAG 1 cut(s) 544
BpuMI CCSGG 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 2 cut(s) 202, 600
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 434, 830
Bse1I ACTGG 1 cut(s) 815
BseBI CCWGG 2 cut(s) 562, 758
BseDI CCNNGG 2 cut(s) 202, 600
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 3 cut(s) 282, 434, 830
BseMII CTCAG 3 cut(s) 477, 633, 918
BseNI ACTGG 1 cut(s) 815
BseRI GAGGAG 8 cut(s) 19, 235, 238, 241, 244, 247, 256, 259
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 3 cut(s) 201, 681, 925
BsiSI CCGG 1 cut(s) 683
BslFI GGGAC 3 cut(s) 95, 812, 927
BslI CCNNNNNNNGG 3 cut(s) 282, 434, 830
BsmAI GTCTC 4 cut(s) 316, 562, 580, 651
BsmBI CGTCTC 1 cut(s) 651
BsmFI GGGAC 3 cut(s) 95, 812, 927
BsnI GGCC 3 cut(s) 201, 681, 925
Bso31I GGTCTC 1 cut(s) 562
Bsp143I GATC 1 cut(s) 642
Bsp19I CCATGG 1 cut(s) 202
BspANI GGCC 3 cut(s) 201, 681, 925
BspCNI CTCAG 3 cut(s) 476, 632, 919
BspHI TCATGA 2 cut(s) 631, 805
BspLI GGNNCC 2 cut(s) 673, 755
BspMAI CTGCAG 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 562
BsrI ACTGG 1 cut(s) 815
BssECI CCNNGG 2 cut(s) 202, 600
BssMI GATC 1 cut(s) 642
BssT1I CCWWGG 2 cut(s) 202, 600
Bst2UI CCWGG 2 cut(s) 562, 758
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 2 cut(s) 722, 885
BstC8I GCNNGC 3 cut(s) 429, 837, 878
BstDEI CTNAG 3 cut(s) 463, 619, 927
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 1 cut(s) 645
BstMAI GTCTC 4 cut(s) 316, 562, 580, 651
BstMBI GATC 1 cut(s) 642
BstNI CCWGG 2 cut(s) 562, 758
BstNSI RCATGY 3 cut(s) 35, 129, 575
BstSCI CCNGG 3 cut(s) 560, 681, 756
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 172
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 3 cut(s) 201, 681, 925
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 3 cut(s) 429, 837, 878
CaiI CAGNNNCTG 2 cut(s) 325, 882
CciI TCATGA 2 cut(s) 631, 805
Cfr13I GGNCC 4 cut(s) 65, 419, 672, 680
Csp6I GTAC 3 cut(s) 184, 229, 520
CviAII CATG 8 cut(s) 32, 126, 203, 454, 572, 632, 806, 847
CviQI GTAC 3 cut(s) 184, 229, 520
DdeI CTNAG 3 cut(s) 463, 619, 927
DpnI GATC 1 cut(s) 644
DpnII GATC 1 cut(s) 642
DraI TTTAAA 1 cut(s) 369
DriI GACNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 722, 885
Eam1105I GACNNNNNGTC 1 cut(s) 212
EarI CTCTTC 2 cut(s) 722, 885
Eco130I CCWWGG 2 cut(s) 202, 600
Eco147I AGGCCT 1 cut(s) 925
Eco31I GGTCTC 1 cut(s) 562
Eco47I GGWCC 3 cut(s) 65, 419, 672
Eco57I CTGAAG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 65
EcoRI GAATTC 2 cut(s) 192, 238
EcoRII CCWGG 2 cut(s) 560, 756
EcoT14I CCWWGG 2 cut(s) 202, 600
EcoT22I ATGCAT 1 cut(s) 131
ErhI CCWWGG 2 cut(s) 202, 600
Esp3I CGTCTC 1 cut(s) 651
FaeI CATG 8 cut(s) 35, 129, 206, 457, 575, 635, 809, 850
FaqI GGGAC 3 cut(s) 95, 812, 927
FatI CATG 8 cut(s) 31, 125, 202, 453, 571, 631, 805, 846
FbaI TGATCA 1 cut(s) 642
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 2 cut(s) 197, 858
GluI GCNGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 544
HaeIII GGCC 3 cut(s) 201, 681, 925
HapII CCGG 1 cut(s) 683
Hin1II CATG 8 cut(s) 35, 129, 206, 457, 575, 635, 809, 850
HinfI GANTC 7 cut(s) 50, 100, 207, 290, 461, 526, 617
HpaII CCGG 1 cut(s) 683
HphI GGTGA 2 cut(s) 497, 736
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 4 cut(s) 49, 466, 642, 749
Hpy188III TCNNGA 6 cut(s) 148, 621, 632, 806, 853, 902
Hpy8I GTNNAC 1 cut(s) 787
Hpy99I CGWCG 2 cut(s) 307, 665
HpyAV CCTTC 6 cut(s) 78, 114, 271, 325, 659, 889
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 3 cut(s) 129, 328, 363
HpyF3I CTNAG 3 cut(s) 463, 619, 927
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 8 cut(s) 35, 129, 206, 457, 575, 635, 809, 850
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 1 cut(s) 642
Lsp1109I GCAGC 1 cut(s) 172
MaeI CTAG 2 cut(s) 197, 858
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 5 cut(s) 20, 85, 121, 485, 650
MalI GATC 1 cut(s) 644
MboI GATC 1 cut(s) 642
MboII GAAGA 5 cut(s) 509, 526, 721, 739, 902
MluCI AATT 7 cut(s) 192, 238, 364, 492, 545, 608, 742
MlyI GAGTC 5 cut(s) 94, 201, 455, 520, 611
Mph1103I ATGCAT 1 cut(s) 131
MseI TTAA 2 cut(s) 39, 368
MspI CCGG 1 cut(s) 683
MspR9I CCNGG 3 cut(s) 562, 683, 758
MvaI CCWGG 2 cut(s) 562, 758
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 1 cut(s) 202
NdeII GATC 1 cut(s) 642
NlaIII CATG 8 cut(s) 35, 129, 206, 457, 575, 635, 809, 850
NlaIV GGNNCC 2 cut(s) 673, 755
NmuCI GTSAC 2 cut(s) 485, 650
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 3 cut(s) 35, 129, 575
PagI TCATGA 2 cut(s) 631, 805
PceI AGGCCT 1 cut(s) 925
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PfeI GAWTC 2 cut(s) 50, 290
PflMI CCANNNNNTGG 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 560
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 5 cut(s) 94, 201, 455, 520, 611
PpsI GAGTC 5 cut(s) 94, 201, 455, 520, 611
PpuMI RGGWCCY 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 560, 756
PspGI CCWGG 2 cut(s) 560, 756
PspN4I GGNNCC 2 cut(s) 673, 755
PspPI GGNCC 4 cut(s) 65, 419, 672, 680
PspPPI RGGWCCY 1 cut(s) 65
PstI CTGCAG 1 cut(s) 330
PstNI CAGNNNCTG 2 cut(s) 325, 882
RsaI GTAC 3 cut(s) 185, 230, 521
RsaNI GTAC 3 cut(s) 184, 229, 520
SaqAI TTAA 2 cut(s) 39, 368
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 1 cut(s) 642
Sau96I GGNCC 4 cut(s) 65, 419, 672, 680
SchI GAGTC 5 cut(s) 94, 201, 455, 520, 611
ScrFI CCNGG 3 cut(s) 562, 683, 758
SfcI CTRYAG 1 cut(s) 326
SinI GGWCC 3 cut(s) 65, 419, 672
Sse9I AATT 7 cut(s) 192, 238, 364, 492, 545, 608, 742
SseBI AGGCCT 1 cut(s) 925
SspI AATATT 1 cut(s) 715
SspMI CTAG 2 cut(s) 197, 858
StuI AGGCCT 1 cut(s) 925
StyD4I CCNGG 3 cut(s) 560, 681, 756
StyI CCWWGG 2 cut(s) 202, 600
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 1 cut(s) 353
TaqI TCGA 3 cut(s) 305, 311, 698
TasI AATT 7 cut(s) 192, 238, 364, 492, 545, 608, 742
TatI WGTACW 2 cut(s) 228, 519
TfiI GAWTC 2 cut(s) 50, 290
Tru1I TTAA 2 cut(s) 39, 368
Tru9I TTAA 2 cut(s) 39, 368
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 2 cut(s) 485, 650
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 2 cut(s) 485, 650
TspDTI ATGAA 4 cut(s) 42, 42, 794, 835
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 434
VpaK11BI GGWCC 3 cut(s) 65, 419, 672
XapI RAATTY 4 cut(s) 192, 238, 545, 742
XceI RCATGY 3 cut(s) 35, 129, 575
XspI CTAG 2 cut(s) 197, 858
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.