Rh3BG200200

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0014762
Physical Location & Seq
Forward (+)
17824351 .. 17826884
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG200200.1

Sequence Viewer

Length: 945 bp
ATGAGGAGTATAGCTACTTGTTACAATGAACATGCTATCAAGGTATCAGATTCATATTGTTCAGGGCCTTCAAACAGAGCCTATGTGACCCCTAAGTCGACTCCTTCAATCCCAAATGAAGTTACATGCATATACAAAACCAAGCTCTTGAACCACCAGCGGCTTTTGATCACTCTAACTTGGTACAACAGAATTTCAGGCCAAGGACTCATTGTCAATGTGGACGAGTACAAAATGAATTCCTCCTCCTCCTCCTCATCTTGGGAATCAAAATCATTGTCGAGTTCGAATTCCCAGAGACTGCAGAAGGAAAAGGGTACCAGGACATTCCAATCCTGCAATTTAAAGATAGAAGTGTTTTGGGATTTCTCCACTGCTGATTATGACAATGGAGGACCAGAGCCAACAAATGGATTTTATTTATTGGTTTTGGCAGACTCAGAACTTGGTCTGATCCTTGGGGACAAGATAGAAGAAGTGCTGGACCTGAAGAAGTACAAGACTATCATTTCACAGCAGAAATTCTCATTGGTCTCCAGGAGTGAGCATGTCTCTGGTAATGCAGTGTATTCAACCAAGGCTCAATTCTCTGACTCGGGAATAGCTCATGACATTCTGATTAAGTGTGACAGAGACGACGAAGGAGGCTCGAAAAGCCAGGTGCTAACGGTTTCAATTGACAAGAAGAAGATTTTTCAGGTGAAGAGGTTGAAGTGGAATTTCAGAGGGAACCAGGCAATTTTTTTAGATGGTTTGCTGGTGGATTTGATGTGGGACATTCATGACTGGTTGTTCAACCCAAAATCTGGGCGTGCTGTGTTCATGTTCAGGACTAGGAGCGGATTGGATAGCAGGCTTTGGCTGGAAGAGAAGGTTCTTGAACACAAGGGACAGGACAGGCCGGAATTCTCCTTGTTGATCTGTGCCTGTAAGAGCCCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

314

Amino Acids

35.59

Weight (kDa)

8.55

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 38 - 311 1.4e-80 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014762)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g17950
malus_domestica MD12G1018600.v1.1 MD14G1016600.v1.1
prunus_persica Prupe.7G116700_v2.0.a1
pyrus_communis pycom12g01540 pycom14g01420
rosa_chinensis RchiOBHm_Chr3g0472211
rosa_laevigata RLG00000024097
rosa_multiflora Rmu_sc0002532.1_g000035
rosa_roxburghii Rroxscaffold_6G00409150
rosa_rugosa Rorug03G0122800
rosa_samantha Rh3AG175200 Rh3BG200200 Rh3CG191700 Rh3CG199000 Rh3DG174200
rosa_wichuraiana Rw3G016610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 2 cut(s) 410, 806
AccBSI CCGCTC 1 cut(s) 840
AccI GTMKAC 1 cut(s) 98
AciI CCGC 2 cut(s) 160, 840
AclWI GGATC 1 cut(s) 448
AcsI RAATTY 6 cut(s) 192, 238, 289, 521, 718, 905
AcuI CTGAAG 1 cut(s) 509
AfaI GTAC 4 cut(s) 185, 230, 319, 497
AfiI CCNNNNNNNGG 3 cut(s) 261, 410, 806
AgsI TTSAA 8 cut(s) 72, 108, 151, 573, 675, 712, 796, 881
AhdI GACNNNNNGTC 1 cut(s) 212
AjnI CCWGG 4 cut(s) 320, 536, 657, 732
AjuI GAANNNNNNNTTGG 4 cut(s) 512, 544, 569, 601
AluBI AGCT 3 cut(s) 14, 145, 605
AluI AGCT 3 cut(s) 14, 145, 605
Alw26I GTCTC 4 cut(s) 292, 538, 556, 627
AlwI GGATC 1 cut(s) 448
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 595
AoxI GGCC 3 cut(s) 65, 199, 899
ApoI RAATTY 6 cut(s) 192, 238, 289, 521, 718, 905
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp718I GGTACC 1 cut(s) 317
AspS9I GGNCC 3 cut(s) 65, 395, 484
AsuHPI GGTGA 1 cut(s) 712
AsuII TTCGAA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 595
AvaII GGWCC 2 cut(s) 395, 484
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 938
BccI CCATC 1 cut(s) 743
BciT130I CCWGG 4 cut(s) 322, 538, 659, 734
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 4 cut(s) 292, 538, 556, 627
BfaI CTAG 2 cut(s) 834, 943
BfmI CTRYAG 1 cut(s) 302
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 4 cut(s) 322, 538, 659, 734
Bme18I GGWCC 2 cut(s) 395, 484
BmeRI GACNNNNNGTC 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 595
BmgT120I GGNCC 3 cut(s) 65, 395, 484
BmiI GGNNCC 2 cut(s) 319, 731
BmrFI CCNGG 4 cut(s) 322, 538, 659, 734
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpmI CTGGAG 1 cut(s) 520
Bpu14I TTCGAA 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 538
BsaJI CCNNGG 3 cut(s) 202, 457, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 410, 806
Bse1I ACTGG 1 cut(s) 791
BseBI CCWGG 4 cut(s) 322, 538, 659, 734
BseDI CCNNGG 3 cut(s) 202, 457, 576
BseLI CCNNNNNNNGG 3 cut(s) 261, 410, 806
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 791
BseRI GAGGAG 5 cut(s) 19, 235, 238, 241, 244
BshFI GGCC 3 cut(s) 67, 201, 901
BshNI GGYRCC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 595
BsiSI CCGG 1 cut(s) 902
BslFI GGGAC 3 cut(s) 476, 788, 903
BslI CCNNNNNNNGG 3 cut(s) 261, 410, 806
BsmAI GTCTC 4 cut(s) 292, 538, 556, 627
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 3 cut(s) 476, 788, 903
BsnI GGCC 3 cut(s) 67, 201, 901
Bso31I GGTCTC 1 cut(s) 538
BsoBI CYCGRG 1 cut(s) 595
Bsp119I TTCGAA 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 938
Bsp143I GATC 3 cut(s) 168, 453, 918
BspACI CCGC 2 cut(s) 160, 840
BspANI GGCC 3 cut(s) 67, 201, 901
BspCNI CTCAG 1 cut(s) 452
BspHI TCATGA 2 cut(s) 607, 781
BspLI GGNNCC 2 cut(s) 319, 731
BspMAI CTGCAG 1 cut(s) 306
BspPI GGATC 1 cut(s) 448
BspT104I TTCGAA 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 538
BsrBI CCGCTC 1 cut(s) 840
BsrI ACTGG 1 cut(s) 791
BssECI CCNNGG 3 cut(s) 202, 457, 576
BssMI GATC 3 cut(s) 168, 453, 918
BssT1I CCWWGG 3 cut(s) 202, 457, 576
Bst2UI CCWGG 4 cut(s) 322, 538, 659, 734
Bst4CI ACNGT 1 cut(s) 670
Bst6I CTCTTC 2 cut(s) 698, 861
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 813, 854
BstDEI CTNAG 2 cut(s) 93, 439
BstKTI GATC 3 cut(s) 171, 456, 921
BstMAI GTCTC 4 cut(s) 292, 538, 556, 627
BstMBI GATC 3 cut(s) 168, 453, 918
BstMWI GCNNNNNNNGC 1 cut(s) 654
BstNI CCWGG 4 cut(s) 322, 538, 659, 734
BstNSI RCATGY 3 cut(s) 35, 129, 551
BstSCI CCNGG 4 cut(s) 320, 536, 657, 732
BstSFI CTRYAG 1 cut(s) 302
BsuRI GGCC 3 cut(s) 67, 201, 901
BtsI GCAGTG 2 cut(s) 372, 570
BtsIMutI CAGTG 2 cut(s) 372, 570
Cac8I GCNNGC 2 cut(s) 813, 854
CaiI CAGNNNCTG 1 cut(s) 301
CciI TCATGA 2 cut(s) 607, 781
Cfr13I GGNCC 3 cut(s) 65, 395, 484
Csp6I GTAC 4 cut(s) 184, 229, 318, 496
CviAII CATG 6 cut(s) 32, 126, 548, 608, 782, 823
CviQI GTAC 4 cut(s) 184, 229, 318, 496
DdeI CTNAG 2 cut(s) 93, 439
DpnI GATC 3 cut(s) 170, 455, 920
DpnII GATC 3 cut(s) 168, 453, 918
DraI TTTAAA 1 cut(s) 345
DrdI GACNNNNNNGTC 1 cut(s) 94
DriI GACNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 698, 861
Eam1105I GACNNNNNGTC 1 cut(s) 212
EarI CTCTTC 2 cut(s) 698, 861
Eco130I CCWWGG 3 cut(s) 202, 457, 576
Eco24I GRGCYC 1 cut(s) 938
Eco31I GGTCTC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 395, 484
Eco57I CTGAAG 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 595
EcoO109I RGGNCCY 1 cut(s) 65
EcoRI GAATTC 3 cut(s) 238, 289, 905
EcoRII CCWGG 4 cut(s) 320, 536, 657, 732
EcoT14I CCWWGG 3 cut(s) 202, 457, 576
EcoT22I ATGCAT 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 938
ErhI CCWWGG 3 cut(s) 202, 457, 576
Esp3I CGTCTC 1 cut(s) 627
FaeI CATG 6 cut(s) 35, 129, 551, 611, 785, 826
FaqI GGGAC 3 cut(s) 476, 788, 903
FatI CATG 6 cut(s) 31, 125, 547, 607, 781, 822
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 938
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 2 cut(s) 834, 943
GluI GCNGC 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 520
HaeIII GGCC 3 cut(s) 67, 201, 901
HapII CCGG 1 cut(s) 902
Hin1II CATG 6 cut(s) 35, 129, 551, 611, 785, 826
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 6 cut(s) 50, 100, 207, 266, 437, 593
HpaII CCGG 1 cut(s) 902
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 2 cut(s) 99, 223
Hpy188I TCNGA 6 cut(s) 49, 442, 453, 592, 618, 725
Hpy188III TCNNGA 6 cut(s) 148, 597, 608, 782, 829, 878
Hpy8I GTNNAC 2 cut(s) 99, 223
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 5 cut(s) 78, 114, 301, 635, 865
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4V TGCA 4 cut(s) 129, 304, 339, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 654
HpyF3I CTNAG 2 cut(s) 93, 439
Hsp92II CATG 6 cut(s) 35, 129, 551, 611, 785, 826
KpnI GGTACC 1 cut(s) 321
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 3 cut(s) 168, 453, 918
LmnI GCTCC 1 cut(s) 837
MaeI CTAG 2 cut(s) 834, 943
MaeIII GTNAC 4 cut(s) 20, 85, 121, 626
MalI GATC 3 cut(s) 170, 455, 920
MbiI CCGCTC 1 cut(s) 840
MboI GATC 3 cut(s) 168, 453, 918
MboII GAAGA 6 cut(s) 485, 502, 697, 700, 715, 878
MfeI CAATTG 1 cut(s) 675
MhlI GDGCHC 1 cut(s) 938
MlyI GAGTC 4 cut(s) 94, 201, 431, 587
MnlI CCTC 9 cut(s) 253, 256, 259, 262, 265, 386, 638, 699, 719
Mph1103I ATGCAT 1 cut(s) 131
MseI TTAA 2 cut(s) 344, 621
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 1 cut(s) 902
MspR9I CCNGG 4 cut(s) 322, 538, 659, 734
MunI CAATTG 1 cut(s) 675
MvaI CCWGG 4 cut(s) 322, 538, 659, 734
MwoI GCNNNNNNNGC 1 cut(s) 654
NdeII GATC 3 cut(s) 168, 453, 918
NlaIII CATG 6 cut(s) 35, 129, 551, 611, 785, 826
NlaIV GGNNCC 2 cut(s) 319, 731
NmuCI GTSAC 2 cut(s) 85, 626
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 3 cut(s) 35, 129, 551
NspV TTCGAA 1 cut(s) 287
PagI TCATGA 2 cut(s) 607, 781
PfeI GAWTC 2 cut(s) 50, 266
PflMI CCANNNNNTGG 2 cut(s) 410, 806
PfoI TCCNGGA 1 cut(s) 536
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 4 cut(s) 94, 201, 431, 587
PpsI GAGTC 4 cut(s) 94, 201, 431, 587
Psp6I CCWGG 4 cut(s) 320, 536, 657, 732
PspGI CCWGG 4 cut(s) 320, 536, 657, 732
PspN4I GGNNCC 2 cut(s) 319, 731
PspPI GGNCC 3 cut(s) 65, 395, 484
PstI CTGCAG 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 301
RsaI GTAC 4 cut(s) 185, 230, 319, 497
RsaNI GTAC 4 cut(s) 184, 229, 318, 496
SalI GTCGAC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 344, 621
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 168, 453, 918
Sau96I GGNCC 3 cut(s) 65, 395, 484
SchI GAGTC 4 cut(s) 94, 201, 431, 587
ScrFI CCNGG 4 cut(s) 322, 538, 659, 734
SduI GDGCHC 1 cut(s) 938
SetI ASST 9 cut(s) 16, 45, 147, 489, 607, 663, 702, 710, 876
SfcI CTRYAG 1 cut(s) 302
SfuI TTCGAA 1 cut(s) 287
SinI GGWCC 2 cut(s) 395, 484
SsiI CCGC 2 cut(s) 160, 840
SspMI CTAG 2 cut(s) 834, 943
StyD4I CCNGG 4 cut(s) 320, 536, 657, 732
StyI CCWWGG 3 cut(s) 202, 457, 576
TaaI ACNGT 1 cut(s) 670
TaqI TCGA 4 cut(s) 98, 281, 287, 650
TatI WGTACW 2 cut(s) 228, 495
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 2 cut(s) 50, 266
Tru1I TTAA 2 cut(s) 344, 621
Tru9I TTAA 2 cut(s) 344, 621
TscAI CASTG 2 cut(s) 379, 570
TseFI GTSAC 2 cut(s) 85, 626
Tsp45I GTSAC 2 cut(s) 85, 626
TspDTI ATGAA 6 cut(s) 42, 42, 132, 251, 770, 811
TspRI CASTG 2 cut(s) 379, 570
Van91I CCANNNNNTGG 2 cut(s) 410, 806
VpaK11BI GGWCC 2 cut(s) 395, 484
XapI RAATTY 6 cut(s) 192, 238, 289, 521, 718, 905
XceI RCATGY 3 cut(s) 35, 129, 551
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 2 cut(s) 834, 943
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.