RLG00000024097

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014762
Physical Location & Seq
Reverse (-)
31823566 .. 31825752
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024097

Sequence Viewer

Length: 1122 bp
ATGAGGAGTATAGCTACTTGTTACAATGAACATGCTATCAAGGTATCAGATTCATATTGTTCAGGGCCTTCAAACAGAGCCTATGTGACCCCTAAGTTGACTCCTTCAATCCCAAATGAAGTTGCATGCATATACAAAACCAAGCTCTTGAACCACCAGCAGCTTTTGATCTCTCTAACTTGGTACAACAGAATTTCAGGCCAAGGACTCATTGTCAATGTGGAGGAGTACAAAATGAATTCCTCCTCCTCCTCCTCCTCATCTTGGGAATCAAAATCATTGTCGAGTTCGAATTCCCAGAGACTGCAGAAGGAAAAGGGTACCAGGACATTCCAATCCTGCAATTTAAAGATAGAAGTGTTTTGGGATTTCTCCACTGCTGATTATGACAATGGAGGACCAGAGCCAACAAATGGTTTTTATTTATTGGTTTTGGTAGACTCAGAACTTGGTCTGATCCTTGGGGACAAGATAGAAGAAGTGCTGGACCTGAAGAAGTACAAGACTATCATTTCACAGCAGAAATTCTCATTGGTCTCCAGGAGTGAGCATGTCTCTGGTAATGCAGTGTATTCAACCAAGGCTCAATTCTGTGACTCGGGAATAGCTCATGACATTCTGATCAAGTGTGACAGAGACGACGAAGGAGGTTCGAAAAGCCAGGTGCTAACGGTTTCTATTGACAAGAAGAAAATTTTTCAGGTGAAGAGGTTGAAGTGGAATTTCAGAGGGAACCAGGCAATTTTTTTAGATGGTTTGCTGGTGGATTTGATGTGGGACATTCATGACTGGTTGTTCAACCCAAAATCTGGGCGTGCTGTGTTCATGTTCAGGACCAGGAGCGGATTGGATAGCAGGCTTTGGCTGGAAGAGAAGGCTCTTGAACACAAGGGACAGGACATGCCGGAATTCTCCTTGTTGATCTGTGCCTCTCCCTGCTGCCCCGGCGGTGGCAAAGATTTGGGTTATGGAGATCTTTCGATGGGTTCTATGCTGCTGTACTTGCACGGGATTGTTTTGGTTGGACTCCAAGTCTTCGTCGGCAGATCTGGTGACGTTTCTGTGTCACCTTTGGGCTTGGCTAGTGGCGGCGACGTCACTACGTCATCTCTCTCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

374

Amino Acids

41.28

Weight (kDa)

7.02

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 38 - 310 4.5e-79 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014762)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g17950
malus_domestica MD12G1018600.v1.1 MD14G1016600.v1.1
prunus_persica Prupe.7G116700_v2.0.a1
pyrus_communis pycom12g01540 pycom14g01420
rosa_chinensis RchiOBHm_Chr3g0472211
rosa_laevigata RLG00000024097
rosa_multiflora Rmu_sc0002532.1_g000035
rosa_roxburghii Rroxscaffold_6G00409150
rosa_rugosa Rorug03G0122800
rosa_samantha Rh3AG175200 Rh3BG200200 Rh3CG191700 Rh3CG199000 Rh3DG174200
rosa_wichuraiana Rw3G016610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1098
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 320
AccB7I CCANNNNNTGG 2 cut(s) 413, 809
AccBSI CCGCTC 1 cut(s) 843
AccI GTMKAC 1 cut(s) 438
AciI CCGC 3 cut(s) 843, 948, 1089
AclWI GGATC 1 cut(s) 451
AcsI RAATTY 7 cut(s) 192, 238, 292, 524, 693, 721, 908
AcuI CTGAAG 1 cut(s) 512
AcyI GRCGYC 1 cut(s) 1095
AfaI GTAC 5 cut(s) 185, 230, 322, 500, 1001
AfiI CCNNNNNNNGG 4 cut(s) 264, 413, 809, 950
AgsI TTSAA 7 cut(s) 72, 108, 151, 576, 715, 799, 884
AhdI GACNNNNNGTC 2 cut(s) 212, 1031
AjnI CCWGG 5 cut(s) 323, 539, 660, 735, 836
AjuI GAANNNNNNNTTGG 4 cut(s) 515, 547, 572, 604
AluBI AGCT 4 cut(s) 14, 145, 163, 608
AluI AGCT 4 cut(s) 14, 145, 163, 608
Alw26I GTCTC 4 cut(s) 295, 541, 559, 630
AlwI GGATC 1 cut(s) 451
AlwNI CAGNNNCTG 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 598
AoxI GGCC 2 cut(s) 65, 199
ApeKI GCWGC 3 cut(s) 160, 939, 994
ApoI RAATTY 7 cut(s) 192, 238, 292, 524, 693, 721, 908
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
Asp718I GGTACC 1 cut(s) 320
AspS9I GGNCC 4 cut(s) 65, 398, 487, 834
AsuC2I CCSGG 1 cut(s) 945
AsuHPI GGTGA 3 cut(s) 715, 1059, 1064
AsuII TTCGAA 2 cut(s) 290, 653
AvaI CYCGRG 1 cut(s) 598
AvaII GGWCC 3 cut(s) 398, 487, 834
BanI GGYRCC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 1027
BbvI GCAGC 3 cut(s) 172, 926, 981
BccI CCATC 2 cut(s) 746, 976
BciT130I CCWGG 5 cut(s) 325, 541, 662, 737, 838
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 1 cut(s) 945
BcoDI GTCTC 4 cut(s) 295, 541, 559, 630
BfaI CTAG 1 cut(s) 1083
BfmI CTRYAG 1 cut(s) 305
BglII AGATCT 2 cut(s) 973, 1046
BisI GCNGC 4 cut(s) 161, 940, 995, 1090
BlsI GCNGC 4 cut(s) 162, 941, 996, 1091
Bme1390I CCNGG 6 cut(s) 325, 541, 662, 737, 838, 945
Bme18I GGWCC 3 cut(s) 398, 487, 834
BmeRI GACNNNNNGTC 2 cut(s) 212, 1031
BmeT110I CYCGRG 1 cut(s) 598
BmgT120I GGNCC 4 cut(s) 65, 398, 487, 834
BmiI GGNNCC 2 cut(s) 322, 734
BmrFI CCNGG 6 cut(s) 325, 541, 662, 737, 838, 945
BpiI GAAGAC 1 cut(s) 1027
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 1 cut(s) 523
Bpu14I TTCGAA 2 cut(s) 290, 653
BpuMI CCSGG 1 cut(s) 945
BsaHI GRCGYC 1 cut(s) 1095
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 4 cut(s) 202, 460, 579, 943
Bsc4I CCNNNNNNNGG 4 cut(s) 264, 413, 809, 950
Bse1I ACTGG 1 cut(s) 794
BseBI CCWGG 5 cut(s) 325, 541, 662, 737, 838
BseDI CCNNGG 4 cut(s) 202, 460, 579, 943
BseLI CCNNNNNNNGG 4 cut(s) 264, 413, 809, 950
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 794
BseRI GAGGAG 7 cut(s) 19, 235, 238, 239, 241, 244, 247
BseXI GCAGC 3 cut(s) 172, 926, 981
BshFI GGCC 2 cut(s) 67, 201
BshNI GGYRCC 1 cut(s) 320
BsiHKCI CYCGRG 1 cut(s) 598
BsiSI CCGG 2 cut(s) 905, 945
BslFI GGGAC 3 cut(s) 479, 791, 906
BslI CCNNNNNNNGG 4 cut(s) 264, 413, 809, 950
BsmAI GTCTC 4 cut(s) 295, 541, 559, 630
BsmBI CGTCTC 1 cut(s) 630
BsmFI GGGAC 3 cut(s) 479, 791, 906
BsnI GGCC 2 cut(s) 67, 201
Bso31I GGTCTC 1 cut(s) 541
BsoBI CYCGRG 1 cut(s) 598
Bsp119I TTCGAA 2 cut(s) 290, 653
Bsp143I GATC 6 cut(s) 168, 456, 621, 921, 973, 1046
BspACI CCGC 3 cut(s) 843, 948, 1089
BspANI GGCC 2 cut(s) 67, 201
BspCNI CTCAG 1 cut(s) 455
BspHI TCATGA 2 cut(s) 610, 784
BspLI GGNNCC 2 cut(s) 322, 734
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 1 cut(s) 451
BspT104I TTCGAA 2 cut(s) 290, 653
BspT107I GGYRCC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 541
BsrBI CCGCTC 1 cut(s) 843
BsrI ACTGG 1 cut(s) 794
BssECI CCNNGG 4 cut(s) 202, 460, 579, 943
BssMI GATC 6 cut(s) 168, 456, 621, 921, 973, 1046
BssNI GRCGYC 1 cut(s) 1095
BssT1I CCWWGG 3 cut(s) 202, 460, 579
Bst2UI CCWGG 5 cut(s) 325, 541, 662, 737, 838
Bst4CI ACNGT 1 cut(s) 673
Bst6I CTCTTC 2 cut(s) 701, 864
BstACI GRCGYC 1 cut(s) 1095
BstBI TTCGAA 2 cut(s) 290, 653
BstC8I GCNNGC 3 cut(s) 127, 816, 857
BstDEI CTNAG 2 cut(s) 93, 442
BstKTI GATC 6 cut(s) 171, 459, 624, 924, 976, 1049
BstMAI GTCTC 4 cut(s) 295, 541, 559, 630
BstMBI GATC 6 cut(s) 168, 456, 621, 921, 973, 1046
BstMWI GCNNNNNNNGC 2 cut(s) 945, 1003
BstNI CCWGG 5 cut(s) 325, 541, 662, 737, 838
BstNSI RCATGY 4 cut(s) 35, 129, 554, 904
BstSCI CCNGG 6 cut(s) 323, 539, 660, 735, 836, 943
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 172, 926, 981
BstV2I GAAGAC 1 cut(s) 1027
BstX2I RGATCY 2 cut(s) 973, 1046
BstYI RGATCY 2 cut(s) 973, 1046
BsuRI GGCC 2 cut(s) 67, 201
BtsI GCAGTG 2 cut(s) 375, 573
BtsIMutI CAGTG 2 cut(s) 375, 573
Cac8I GCNNGC 3 cut(s) 127, 816, 857
CaiI CAGNNNCTG 1 cut(s) 304
CciI TCATGA 2 cut(s) 610, 784
Cfr13I GGNCC 4 cut(s) 65, 398, 487, 834
Csp6I GTAC 5 cut(s) 184, 229, 321, 499, 1000
CviAII CATG 7 cut(s) 32, 126, 551, 611, 785, 826, 901
CviQI GTAC 5 cut(s) 184, 229, 321, 499, 1000
DdeI CTNAG 2 cut(s) 93, 442
DpnI GATC 6 cut(s) 170, 458, 623, 923, 975, 1048
DpnII GATC 6 cut(s) 168, 456, 621, 921, 973, 1046
DraI TTTAAA 1 cut(s) 348
DriI GACNNNNNGTC 2 cut(s) 212, 1031
Eam1104I CTCTTC 2 cut(s) 701, 864
Eam1105I GACNNNNNGTC 2 cut(s) 212, 1031
EarI CTCTTC 2 cut(s) 701, 864
Eco130I CCWWGG 3 cut(s) 202, 460, 579
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 3 cut(s) 398, 487, 834
Eco57I CTGAAG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 598
EcoO109I RGGNCCY 1 cut(s) 65
EcoRI GAATTC 3 cut(s) 238, 292, 908
EcoRII CCWGG 5 cut(s) 323, 539, 660, 735, 836
EcoT14I CCWWGG 3 cut(s) 202, 460, 579
EcoT22I ATGCAT 1 cut(s) 131
ErhI CCWWGG 3 cut(s) 202, 460, 579
Esp3I CGTCTC 1 cut(s) 630
FaeI CATG 7 cut(s) 35, 129, 554, 614, 788, 829, 904
FaqI GGGAC 3 cut(s) 479, 791, 906
FatI CATG 7 cut(s) 31, 125, 550, 610, 784, 825, 900
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 4 cut(s) 161, 940, 995, 1090
Fsp4HI GCNGC 4 cut(s) 161, 940, 995, 1090
FspBI CTAG 1 cut(s) 1083
GluI GCNGC 4 cut(s) 161, 940, 995, 1090
GsuI CTGGAG 1 cut(s) 523
HaeIII GGCC 2 cut(s) 67, 201
HapII CCGG 2 cut(s) 905, 945
Hin1I GRCGYC 1 cut(s) 1095
Hin1II CATG 7 cut(s) 35, 129, 554, 614, 788, 829, 904
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 7 cut(s) 50, 100, 207, 269, 440, 596, 1026
HpaII CCGG 2 cut(s) 905, 945
HphI GGTGA 3 cut(s) 715, 1059, 1064
Hpy166II GTNNAC 2 cut(s) 99, 439
Hpy188I TCNGA 5 cut(s) 49, 445, 456, 621, 728
Hpy188III TCNNGA 6 cut(s) 148, 600, 611, 785, 832, 881
Hpy8I GTNNAC 2 cut(s) 99, 439
Hpy99I CGWCG 3 cut(s) 644, 1043, 1097
HpyAV CCTTC 5 cut(s) 78, 114, 304, 638, 868
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4IV ACGT 3 cut(s) 1056, 1095, 1103
HpyCH4V TGCA 6 cut(s) 125, 129, 307, 342, 566, 1006
HpyF10VI GCNNNNNNNGC 2 cut(s) 945, 1003
HpyF3I CTNAG 2 cut(s) 93, 442
HpySE526I ACGT 3 cut(s) 1056, 1095, 1103
Hsp92I GRCGYC 1 cut(s) 1095
Hsp92II CATG 7 cut(s) 35, 129, 554, 614, 788, 829, 904
KpnI GGTACC 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 6 cut(s) 168, 456, 621, 921, 973, 1046
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 3 cut(s) 172, 926, 981
MaeI CTAG 1 cut(s) 1083
MaeII ACGT 3 cut(s) 1056, 1095, 1103
MaeIII GTNAC 7 cut(s) 20, 85, 593, 629, 1052, 1065, 1096
MalI GATC 6 cut(s) 170, 458, 623, 923, 975, 1048
MbiI CCGCTC 1 cut(s) 843
MboI GATC 6 cut(s) 168, 456, 621, 921, 973, 1046
MboII GAAGA 6 cut(s) 488, 505, 700, 718, 881, 1027
MflI RGATCY 2 cut(s) 973, 1046
MlyI GAGTC 5 cut(s) 94, 201, 434, 590, 1020
MmeI TCCRAC 1 cut(s) 1003
Mph1103I ATGCAT 1 cut(s) 131
MseI TTAA 1 cut(s) 347
MspI CCGG 2 cut(s) 905, 945
MspR9I CCNGG 6 cut(s) 325, 541, 662, 737, 838, 945
MvaI CCWGG 5 cut(s) 325, 541, 662, 737, 838
MwoI GCNNNNNNNGC 2 cut(s) 945, 1003
NciI CCSGG 1 cut(s) 945
NdeII GATC 6 cut(s) 168, 456, 621, 921, 973, 1046
NlaIII CATG 7 cut(s) 35, 129, 554, 614, 788, 829, 904
NlaIV GGNNCC 2 cut(s) 322, 734
NmuCI GTSAC 6 cut(s) 85, 593, 629, 1052, 1065, 1096
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 4 cut(s) 35, 129, 554, 904
NspV TTCGAA 2 cut(s) 290, 653
PaeI GCATGC 1 cut(s) 129
PagI TCATGA 2 cut(s) 610, 784
PfeI GAWTC 2 cut(s) 50, 269
PflMI CCANNNNNTGG 2 cut(s) 413, 809
PfoI TCCNGGA 1 cut(s) 539
PkrI GCNGC 4 cut(s) 162, 941, 996, 1091
PleI GAGTC 5 cut(s) 94, 201, 434, 590, 1020
PpsI GAGTC 5 cut(s) 94, 201, 434, 590, 1020
Psp6I CCWGG 5 cut(s) 323, 539, 660, 735, 836
PspGI CCWGG 5 cut(s) 323, 539, 660, 735, 836
PspN4I GGNNCC 2 cut(s) 322, 734
PspPI GGNCC 4 cut(s) 65, 398, 487, 834
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 304
PsuI RGATCY 2 cut(s) 973, 1046
RsaI GTAC 5 cut(s) 185, 230, 322, 500, 1001
RsaNI GTAC 5 cut(s) 184, 229, 321, 499, 1000
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 4 cut(s) 161, 940, 995, 1090
Sau3AI GATC 6 cut(s) 168, 456, 621, 921, 973, 1046
Sau96I GGNCC 4 cut(s) 65, 398, 487, 834
SchI GAGTC 5 cut(s) 94, 201, 434, 590, 1020
ScrFI CCNGG 6 cut(s) 325, 541, 662, 737, 838, 945
SfcI CTRYAG 1 cut(s) 305
SfuI TTCGAA 2 cut(s) 290, 653
SinI GGWCC 3 cut(s) 398, 487, 834
SphI GCATGC 1 cut(s) 129
SsiI CCGC 3 cut(s) 843, 948, 1089
SspMI CTAG 1 cut(s) 1083
StyD4I CCNGG 6 cut(s) 323, 539, 660, 735, 836, 943
StyI CCWWGG 3 cut(s) 202, 460, 579
TaaI ACNGT 1 cut(s) 673
TaiI ACGT 3 cut(s) 1059, 1098, 1106
TaqI TCGA 4 cut(s) 284, 290, 653, 980
TatI WGTACW 3 cut(s) 228, 498, 999
TauI GCSGC 1 cut(s) 1092
TfiI GAWTC 2 cut(s) 50, 269
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 2 cut(s) 382, 573
TseFI GTSAC 6 cut(s) 85, 593, 629, 1052, 1065, 1096
TseI GCWGC 3 cut(s) 160, 939, 994
Tsp45I GTSAC 6 cut(s) 85, 593, 629, 1052, 1065, 1096
TspDTI ATGAA 6 cut(s) 42, 42, 132, 251, 773, 814
TspRI CASTG 2 cut(s) 382, 573
Van91I CCANNNNNTGG 2 cut(s) 413, 809
VpaK11BI GGWCC 3 cut(s) 398, 487, 834
XapI RAATTY 7 cut(s) 192, 238, 292, 524, 693, 721, 908
XceI RCATGY 4 cut(s) 35, 129, 554, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 844
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 1 cut(s) 1083
ZraI GACGTC 1 cut(s) 1096
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.